Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.34800 * 2 1 4 4 C 1.55493 * 110.28325 * 237.89799 * 2 1 3 5 5 C 1.55312 * 100.69518 * 204.64922 * 4 2 1 6 6 H 1.08996 * 110.84635 * 152.41808 * 5 4 2 7 7 C 1.50696 * 110.84859 * 275.83906 * 5 4 2 8 8 O 1.21270 * 120.00260 * 54.98616 * 7 5 4 9 9 N 1.34777 * 119.99625 * 234.98884 * 7 5 4 10 10 C 1.37208 * 120.00237 * 5.03577 * 9 7 5 11 11 H 1.08000 * 120.00126 * 49.58527 * 10 9 7 12 12 C 1.38894 * 119.99906 * 229.58215 * 10 9 7 13 13 N 1.31414 * 120.00442 * 7.59296 * 12 10 9 14 14 Si 1.86798 * 120.00170 * 187.58868 * 12 10 9 15 15 H 1.48506 * 109.47189 * 59.99945 * 14 12 10 16 16 H 1.48491 * 109.47645 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47226 * 300.00460 * 14 12 10 18 18 C 1.39434 * 119.99782 * 185.04031 * 9 7 5 19 19 C 1.39061 * 119.69679 * 184.99678 * 18 9 7 20 20 C 1.38378 * 119.09862 * 179.74499 * 19 18 9 21 21 C 1.38823 * 118.49485 * 0.25399 * 20 19 18 22 22 C 1.38155 * 119.30906 * 359.97438 * 21 20 19 23 23 N 1.31884 * 120.84986 * 0.02562 * 22 21 20 24 24 C 1.54382 * 102.43182 * 34.12826 * 5 4 2 25 25 H 1.09007 * 109.82820 * 98.05878 * 24 5 4 26 26 C 1.52999 * 109.82899 * 219.02655 * 24 5 4 27 27 O 1.43234 * 107.58952 * 338.54114 * 24 5 4 28 28 H 1.08998 * 109.47167 * 299.30748 * 1 2 3 29 29 H 1.08997 * 109.46729 * 59.30866 * 1 2 3 30 30 H 1.08998 * 109.46688 * 179.30504 * 1 2 3 31 31 H 1.09008 * 111.33792 * 86.78037 * 4 2 1 32 32 H 1.08998 * 111.15285 * 322.44498 * 4 2 1 33 33 H 0.96996 * 120.00451 * 174.99134 * 13 12 10 34 34 H 1.07998 * 120.44937 * 0.02562 * 19 18 9 35 35 H 1.08000 * 120.75517 * 180.22825 * 20 19 18 36 36 H 1.07999 * 120.35104 * 180.02562 * 21 20 19 37 37 H 1.07999 * 119.57266 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.47108 * 66.84626 * 26 24 5 39 39 H 1.09004 * 109.47177 * 186.85047 * 26 24 5 40 40 H 1.09005 * 109.46926 * 306.84921 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0691 -0.7751 -1.2355 5 6 3.4701 -1.2024 -0.7190 6 1 3.8002 -2.1196 -1.2067 7 6 4.4758 -0.0985 -0.9208 8 8 4.2617 1.0068 -0.4700 9 7 5.6132 -0.3395 -1.6024 10 6 5.8093 -1.5586 -2.2007 11 1 5.0402 -1.9811 -2.8303 12 6 6.9969 -2.2494 -1.9967 13 7 7.8692 -1.8111 -1.1170 14 14 7.3542 -3.8015 -2.9727 15 1 7.3697 -3.4818 -4.4229 16 1 8.6762 -4.3455 -2.5712 17 1 6.3003 -4.8115 -2.6999 18 6 6.5908 0.6500 -1.6995 19 6 7.7143 0.4332 -2.4898 20 6 8.6742 1.4257 -2.5815 21 6 8.4791 2.6033 -1.8726 22 6 7.3411 2.7487 -1.1029 23 7 6.4432 1.7852 -1.0347 24 6 3.2113 -1.4418 0.7841 25 1 3.0626 -2.5058 0.9688 26 6 4.3992 -0.9324 1.6028 27 8 2.0287 -0.7167 1.1406 28 1 -0.3633 0.5030 0.8961 29 1 -0.3633 0.5245 -0.8837 30 1 -0.3632 -1.0276 -0.0125 31 1 2.1531 -0.1246 -2.1062 32 1 1.4495 -1.6445 -1.4554 33 1 8.6643 -2.3313 -0.9217 34 1 7.8338 -0.4952 -3.0284 35 1 9.5553 1.2873 -3.1905 36 1 9.2089 3.3978 -1.9229 37 1 7.1853 3.6628 -0.5493 38 1 4.4574 0.1531 1.5219 39 1 4.2669 -1.2123 2.6480 40 1 5.3196 -1.3750 1.2218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892473574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -24.748467 kcal Electronic energy + Delta-G solvation = -24484.472432 eV Core-core repulsion = 21072.128865 eV Total energy + Delta-G solvation = -3412.343567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27384 -39.07483 -37.27025 -35.07369 -32.29627 -32.15367 -31.85848 -30.98174 -29.18175 -28.29729 -25.34817 -24.22674 -22.87308 -22.19165 -21.17211 -20.33549 -19.03246 -17.85090 -16.97800 -15.73104 -15.53102 -15.24923 -15.10758 -14.66601 -14.29806 -14.03785 -13.87865 -13.41913 -13.14690 -12.83030 -12.58725 -12.44966 -12.10685 -11.96099 -11.82230 -11.60996 -11.47445 -11.30594 -11.24591 -10.97250 -10.92564 -10.74723 -10.54586 -10.25195 -10.23540 -9.39101 -8.98978 -8.94921 -8.86752 -8.67740 -7.89216 -7.03494 -6.47653 -4.55779 2.23664 2.44746 2.98222 3.05986 3.07190 3.68803 3.87344 4.22283 4.31720 4.64384 5.00982 5.12783 5.28056 5.31736 5.46068 5.62456 5.69316 5.71736 5.75126 5.85192 5.92122 5.99886 6.05198 6.13621 6.20414 6.30756 6.35990 6.36255 6.42333 6.48146 6.57938 6.72732 6.84409 7.02614 7.10739 7.15189 7.26389 7.55366 7.58321 7.89459 8.19120 8.78111 8.87815 9.33371 9.75625 10.39749 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.007365 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.742831 B = 3800.951685 C = 5046.720920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 H 0.083 0.917 4 C -0.133 4.133 5 C -0.134 4.134 6 H 0.118 0.882 7 C 0.507 3.493 8 O -0.515 6.515 9 N -0.385 5.385 10 C -0.362 4.362 11 H 0.097 0.903 12 C 0.052 3.948 13 N -0.842 5.842 14 Si 0.917 3.083 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.267 1.267 18 C 0.385 3.615 19 C -0.141 4.141 20 C -0.081 4.081 21 C -0.237 4.237 22 C 0.105 3.895 23 N -0.494 5.494 24 C 0.105 3.895 25 H 0.078 0.922 26 C -0.170 4.170 27 O -0.379 6.379 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.277 0.723 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -0.328 -1.950 4.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 H 0.101 0.899 4 C -0.171 4.171 5 C -0.156 4.156 6 H 0.136 0.864 7 C 0.296 3.704 8 O -0.390 6.390 9 N -0.097 5.097 10 C -0.490 4.490 11 H 0.114 0.886 12 C -0.158 4.158 13 N -0.474 5.474 14 Si 0.742 3.258 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.192 1.192 18 C 0.155 3.845 19 C -0.165 4.165 20 C -0.108 4.108 21 C -0.259 4.259 22 C -0.054 4.054 23 N -0.209 5.209 24 C 0.047 3.953 25 H 0.096 0.904 26 C -0.228 4.228 27 O -0.299 6.299 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.297 0.253 -0.919 5.382 hybrid contribution 1.523 -1.143 -1.111 2.205 sum -3.773 -0.890 -2.030 4.376 Atomic orbital electron populations 1.21887 0.94648 1.02103 1.01891 1.23083 0.93450 0.96898 0.84533 0.89946 1.23261 0.94643 1.00431 0.98748 1.22847 0.94609 1.00971 0.97152 0.86378 1.20371 0.83367 0.88610 0.78025 1.90638 1.76784 1.24148 1.47475 1.41176 1.13616 1.10635 1.44248 1.19306 1.04411 0.94560 1.30681 0.88571 1.25604 0.95995 0.98516 0.95662 1.69950 1.10981 1.37495 1.28933 0.86136 0.78334 0.81163 0.80130 1.19268 1.20502 1.19228 1.18786 0.89460 0.86262 0.90027 1.21512 0.94205 0.99610 1.01222 1.21146 0.98137 0.93249 0.98225 1.21633 1.00653 0.99246 1.04373 1.22254 0.89857 0.96884 0.96358 1.67584 1.30344 1.00960 1.22043 1.22426 0.85607 0.95186 0.92093 0.90398 1.22290 0.97371 1.04035 0.99058 1.88326 1.42185 1.64944 1.34453 0.92253 0.91660 0.92396 0.90267 0.90274 0.91237 0.84670 0.86762 0.86972 0.84575 0.90336 0.93238 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.63 37.16 0.36 -1.59 16 2 C 0.08 1.33 3.62 -25.40 -0.09 1.23 16 3 H 0.08 1.60 7.10 -51.93 -0.37 1.23 16 4 C -0.13 -2.19 6.06 -24.18 -0.15 -2.34 16 5 C -0.13 -2.62 3.10 -89.82 -0.28 -2.90 16 6 H 0.12 2.26 6.22 -51.93 -0.32 1.94 16 7 C 0.51 11.92 4.95 -10.99 -0.05 11.86 16 8 O -0.52 -13.13 12.04 5.57 0.07 -13.06 16 9 N -0.38 -9.52 2.69 -60.71 -0.16 -9.68 16 10 C -0.36 -8.49 7.17 -14.90 -0.11 -8.60 16 11 H 0.10 2.11 7.35 -52.49 -0.39 1.72 16 12 C 0.05 1.20 3.57 -17.49 -0.06 1.14 16 13 N -0.84 -20.90 11.07 55.49 0.61 -20.29 16 14 Si 0.92 17.71 29.56 -169.99 -5.03 12.69 16 15 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 16 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 18 C 0.39 9.74 6.63 -154.64 -1.02 8.71 16 19 C -0.14 -3.29 7.58 -39.22 -0.30 -3.59 16 20 C -0.08 -1.64 10.17 -39.31 -0.40 -2.04 16 21 C -0.24 -4.52 10.11 -39.40 -0.40 -4.91 16 22 C 0.11 2.23 11.18 -17.56 -0.20 2.03 16 23 N -0.49 -12.36 7.92 -12.34 -0.10 -12.45 16 24 C 0.10 1.99 4.03 -26.01 -0.10 1.88 16 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 26 C -0.17 -3.52 8.46 37.16 0.31 -3.21 16 27 O -0.38 -7.21 10.70 -35.23 -0.38 -7.59 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.31 8.03 -51.92 -0.42 0.90 16 32 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 33 H 0.28 6.56 8.32 -40.82 -0.34 6.22 16 34 H 0.14 3.20 5.51 -52.49 -0.29 2.91 16 35 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.14 2.45 8.06 -52.49 -0.42 2.02 16 38 H 0.08 1.84 6.27 -51.93 -0.33 1.51 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.63 7.94 -51.93 -0.41 1.22 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -28.70 321.22 -8.09 -36.79 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.46 Total: 11.07 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.49 Total: -2.32 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.35 Total: -42.42 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.31 Total: -20.65 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.70 -8.09 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.043 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds