Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.34800 * 2 1 4 4 C 1.55493 * 110.28325 * 237.89799 * 2 1 3 5 5 C 1.55312 * 100.69518 * 204.64922 * 4 2 1 6 6 H 1.08996 * 110.84635 * 152.41808 * 5 4 2 7 7 C 1.50696 * 110.84859 * 275.83906 * 5 4 2 8 8 O 1.21270 * 120.00260 * 54.98616 * 7 5 4 9 9 N 1.34777 * 119.99625 * 234.98884 * 7 5 4 10 10 C 1.37208 * 120.00237 * 5.03577 * 9 7 5 11 11 H 1.08000 * 120.00126 * 49.58527 * 10 9 7 12 12 C 1.38894 * 119.99906 * 229.58215 * 10 9 7 13 13 N 1.31414 * 120.00442 * 7.59296 * 12 10 9 14 14 Si 1.86798 * 120.00170 * 187.58868 * 12 10 9 15 15 H 1.48506 * 109.47189 * 59.99945 * 14 12 10 16 16 H 1.48491 * 109.47645 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47226 * 300.00460 * 14 12 10 18 18 C 1.39434 * 119.99782 * 185.04031 * 9 7 5 19 19 C 1.39061 * 119.69679 * 184.99678 * 18 9 7 20 20 C 1.38378 * 119.09862 * 179.74499 * 19 18 9 21 21 C 1.38823 * 118.49485 * 0.25399 * 20 19 18 22 22 C 1.38155 * 119.30906 * 359.97438 * 21 20 19 23 23 N 1.31884 * 120.84986 * 0.02562 * 22 21 20 24 24 C 1.54382 * 102.43182 * 34.12826 * 5 4 2 25 25 H 1.09007 * 109.82820 * 98.05878 * 24 5 4 26 26 C 1.52999 * 109.82899 * 219.02655 * 24 5 4 27 27 O 1.43234 * 107.58952 * 338.54114 * 24 5 4 28 28 H 1.08998 * 109.47167 * 299.30748 * 1 2 3 29 29 H 1.08997 * 109.46729 * 59.30866 * 1 2 3 30 30 H 1.08998 * 109.46688 * 179.30504 * 1 2 3 31 31 H 1.09008 * 111.33792 * 86.78037 * 4 2 1 32 32 H 1.08998 * 111.15285 * 322.44498 * 4 2 1 33 33 H 0.96996 * 120.00451 * 174.99134 * 13 12 10 34 34 H 1.07998 * 120.44937 * 0.02562 * 19 18 9 35 35 H 1.08000 * 120.75517 * 180.22825 * 20 19 18 36 36 H 1.07999 * 120.35104 * 180.02562 * 21 20 19 37 37 H 1.07999 * 119.57266 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.47108 * 66.84626 * 26 24 5 39 39 H 1.09004 * 109.47177 * 186.85047 * 26 24 5 40 40 H 1.09005 * 109.46926 * 306.84921 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0691 -0.7751 -1.2355 5 6 3.4701 -1.2024 -0.7190 6 1 3.8002 -2.1196 -1.2067 7 6 4.4758 -0.0985 -0.9208 8 8 4.2617 1.0068 -0.4700 9 7 5.6132 -0.3395 -1.6024 10 6 5.8093 -1.5586 -2.2007 11 1 5.0402 -1.9811 -2.8303 12 6 6.9969 -2.2494 -1.9967 13 7 7.8692 -1.8111 -1.1170 14 14 7.3542 -3.8015 -2.9727 15 1 7.3697 -3.4818 -4.4229 16 1 8.6762 -4.3455 -2.5712 17 1 6.3003 -4.8115 -2.6999 18 6 6.5908 0.6500 -1.6995 19 6 7.7143 0.4332 -2.4898 20 6 8.6742 1.4257 -2.5815 21 6 8.4791 2.6033 -1.8726 22 6 7.3411 2.7487 -1.1029 23 7 6.4432 1.7852 -1.0347 24 6 3.2113 -1.4418 0.7841 25 1 3.0626 -2.5058 0.9688 26 6 4.3992 -0.9324 1.6028 27 8 2.0287 -0.7167 1.1406 28 1 -0.3633 0.5030 0.8961 29 1 -0.3633 0.5245 -0.8837 30 1 -0.3632 -1.0276 -0.0125 31 1 2.1531 -0.1246 -2.1062 32 1 1.4495 -1.6445 -1.4554 33 1 8.6643 -2.3313 -0.9217 34 1 7.8338 -0.4952 -3.0284 35 1 9.5553 1.2873 -3.1905 36 1 9.2089 3.3978 -1.9229 37 1 7.1853 3.6628 -0.5493 38 1 4.4574 0.1531 1.5219 39 1 4.2669 -1.2123 2.6480 40 1 5.3196 -1.3750 1.2218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -40.858918 kcal Electronic energy + Delta-G solvation = -24485.171033 eV Core-core repulsion = 21072.128865 eV Total energy + Delta-G solvation = -3413.042169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92184 -40.67844 -38.92453 -36.85170 -33.91727 -33.69872 -33.36311 -32.69367 -30.85262 -29.71198 -27.13938 -25.71726 -24.45563 -23.86565 -22.74768 -21.76871 -20.75434 -19.50775 -18.58621 -17.40967 -17.11867 -16.80241 -16.78431 -16.29478 -15.94155 -15.61650 -15.41648 -15.05512 -14.71998 -14.45267 -14.07579 -13.80874 -13.68169 -13.56756 -13.38859 -13.09819 -12.93733 -12.84410 -12.75019 -12.56052 -12.43170 -12.29685 -12.10369 -11.76219 -11.60868 -11.11391 -10.68831 -10.59869 -10.44896 -10.40365 -9.63528 -8.79439 -8.22310 -6.37477 0.55049 0.76744 1.45257 1.48852 1.57413 2.00113 2.24811 2.66639 2.80878 2.92523 3.41756 3.66209 3.73628 3.81454 3.97064 4.20321 4.21401 4.30111 4.40180 4.46919 4.50588 4.56049 4.64294 4.67326 4.74900 4.78569 4.80687 4.90792 4.95182 5.07280 5.17273 5.24640 5.29386 5.35913 5.36553 5.44656 5.59997 5.90743 6.13649 6.14530 6.42797 7.00673 7.16609 7.56978 8.01264 8.65673 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.007365 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.742831 B = 3800.951685 C = 5046.720920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.048 0.952 4 C -0.122 4.122 5 C -0.135 4.135 6 H 0.122 0.878 7 C 0.497 3.503 8 O -0.548 6.548 9 N -0.399 5.399 10 C -0.374 4.374 11 H 0.107 0.893 12 C 0.019 3.981 13 N -0.877 5.877 14 Si 0.983 3.017 15 H -0.262 1.262 16 H -0.285 1.285 17 H -0.256 1.256 18 C 0.350 3.650 19 C -0.160 4.160 20 C -0.080 4.080 21 C -0.219 4.219 22 C 0.087 3.913 23 N -0.532 5.532 24 C 0.106 3.894 25 H 0.108 0.892 26 C -0.158 4.158 27 O -0.388 6.388 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.275 0.725 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.854 -1.208 -2.973 5.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 H 0.066 0.934 4 C -0.160 4.160 5 C -0.156 4.156 6 H 0.140 0.860 7 C 0.287 3.713 8 O -0.425 6.425 9 N -0.111 5.111 10 C -0.501 4.501 11 H 0.125 0.875 12 C -0.187 4.187 13 N -0.510 5.510 14 Si 0.805 3.195 15 H -0.186 1.186 16 H -0.210 1.210 17 H -0.180 1.180 18 C 0.120 3.880 19 C -0.184 4.184 20 C -0.106 4.106 21 C -0.241 4.241 22 C -0.071 4.071 23 N -0.249 5.249 24 C 0.048 3.952 25 H 0.125 0.875 26 C -0.215 4.215 27 O -0.308 6.308 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.168 0.832 36 H 0.176 0.824 37 H 0.179 0.821 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.683 -0.621 -1.956 6.042 hybrid contribution 1.728 -0.708 -0.768 2.019 sum -3.955 -1.329 -2.724 4.983 Atomic orbital electron populations 1.21844 0.91148 1.03566 1.03001 1.23160 0.96020 0.95018 0.84260 0.93433 1.23299 0.93050 1.01543 0.98097 1.22878 0.95196 0.99609 0.97944 0.85988 1.21057 0.83712 0.89220 0.77310 1.90600 1.77520 1.25673 1.48745 1.41483 1.13948 1.11078 1.44609 1.19666 1.05091 0.94470 1.30851 0.87522 1.26347 0.95294 1.01101 0.95968 1.70099 1.11407 1.38783 1.30664 0.85135 0.77938 0.77619 0.78782 1.18630 1.21025 1.18043 1.19170 0.90604 0.86861 0.91323 1.21549 0.94863 1.00283 1.01711 1.21611 0.98288 0.92647 0.98043 1.22060 1.00276 0.99768 1.01983 1.22861 0.90208 0.97034 0.97020 1.67551 1.32326 1.01876 1.23118 1.22488 0.84969 0.96494 0.91238 0.87480 1.22125 0.97362 1.01396 1.00655 1.88311 1.41773 1.65092 1.35647 0.92061 0.89699 0.90687 0.90777 0.86624 0.91544 0.85735 0.83204 0.82419 0.82052 0.93840 0.91219 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.63 71.98 0.69 -2.64 16 2 C 0.07 2.44 3.62 31.45 0.11 2.55 16 3 H 0.05 1.92 7.10 -2.38 -0.02 1.90 16 4 C -0.12 -3.88 6.06 32.25 0.20 -3.69 16 5 C -0.13 -5.28 3.10 -10.28 -0.03 -5.31 16 6 H 0.12 4.61 6.22 -2.39 -0.01 4.60 16 7 C 0.50 24.25 4.95 87.66 0.43 24.68 16 8 O -0.55 -29.47 12.04 -3.00 -0.04 -29.51 16 9 N -0.40 -20.45 2.69 -464.38 -1.25 -21.70 16 10 C -0.37 -17.83 7.17 84.01 0.60 -17.23 16 11 H 0.11 4.67 7.35 -2.91 -0.02 4.65 16 12 C 0.02 0.90 3.57 84.91 0.30 1.20 16 13 N -0.88 -44.58 11.07 21.65 0.24 -44.34 16 14 Si 0.98 35.97 29.56 68.60 2.03 38.00 16 15 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 16 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 17 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 18 C 0.35 18.30 6.63 132.90 0.88 19.18 16 19 C -0.16 -7.55 7.58 22.50 0.17 -7.38 16 20 C -0.08 -3.10 10.17 22.44 0.23 -2.87 16 21 C -0.22 -7.90 10.11 22.39 0.23 -7.68 16 22 C 0.09 3.66 11.18 84.67 0.95 4.60 16 23 N -0.53 -27.55 7.92 -192.94 -1.53 -29.08 16 24 C 0.11 3.99 4.03 31.06 0.13 4.11 16 25 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 26 C -0.16 -6.76 8.46 71.98 0.61 -6.15 16 27 O -0.39 -14.51 10.70 -148.98 -1.59 -16.10 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 2.43 8.03 -2.38 -0.02 2.41 16 32 H 0.12 2.84 8.06 -2.39 -0.02 2.82 16 33 H 0.27 13.31 8.32 -92.71 -0.77 12.54 16 34 H 0.12 6.02 5.51 -2.91 -0.02 6.00 16 35 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 36 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.16 5.69 8.06 -2.91 -0.02 5.66 16 38 H 0.04 2.15 6.27 -2.38 -0.01 2.13 16 39 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.04 2.16 7.94 -2.38 -0.02 2.14 16 Total: -1.00 -65.99 321.22 4.40 -61.59 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 1.04 Total: 37.76 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.50 Total: 3.39 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -2.54 Total: -95.12 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -1.63 Total: -45.61 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -65.99 4.40 -61.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.735 kcal (2) G-P(sol) polarization free energy of solvation -65.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds