Wall clock time and date at job start Tue Mar 31 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.82033 * 2 1 4 4 C 1.54377 * 109.83282 * 239.10999 * 2 1 3 5 5 C 1.55457 * 102.18753 * 219.18477 * 4 2 1 6 6 H 1.09001 * 111.08992 * 276.10627 * 5 4 2 7 7 C 1.50695 * 111.14785 * 151.99139 * 5 4 2 8 8 O 1.21266 * 120.00328 * 248.37229 * 7 5 4 9 9 N 1.34780 * 119.99887 * 68.37259 * 7 5 4 10 10 C 1.37220 * 119.99874 * 355.75796 * 9 7 5 11 11 H 1.07990 * 119.99853 * 319.03082 * 10 9 7 12 12 C 1.38893 * 119.99527 * 139.03220 * 10 9 7 13 13 N 1.31412 * 119.99659 * 172.52931 * 12 10 9 14 14 Si 1.86803 * 120.00295 * 352.52922 * 12 10 9 15 15 H 1.48500 * 109.47264 * 94.20592 * 14 12 10 16 16 H 1.48496 * 109.46901 * 214.20659 * 14 12 10 17 17 H 1.48495 * 109.46975 * 334.20661 * 14 12 10 18 18 C 1.39423 * 120.00112 * 175.75827 * 9 7 5 19 19 C 1.39064 * 119.70009 * 134.31371 * 18 9 7 20 20 C 1.38377 * 119.09899 * 179.71509 * 19 18 9 21 21 C 1.38821 * 118.49475 * 0.54451 * 20 19 18 22 22 C 1.38145 * 119.31121 * 359.73674 * 21 20 19 23 23 N 1.31881 * 120.85114 * 359.97326 * 22 21 20 24 24 C 1.54943 * 100.98668 * 34.03603 * 5 4 2 25 25 H 1.09001 * 110.39085 * 82.57066 * 24 5 4 26 26 C 1.53002 * 110.30843 * 204.69205 * 24 5 4 27 27 O 1.43242 * 109.82814 * 120.88044 * 2 1 3 28 28 H 1.08997 * 109.46912 * 300.70608 * 1 2 3 29 29 H 1.08995 * 109.46992 * 180.70111 * 1 2 3 30 30 H 1.08999 * 109.47083 * 60.70784 * 1 2 3 31 31 H 1.09005 * 110.84899 * 337.32166 * 4 2 1 32 32 H 1.08994 * 110.84984 * 100.93748 * 4 2 1 33 33 H 0.97003 * 119.99754 * 180.02562 * 13 12 10 34 34 H 1.08002 * 120.44849 * 359.97438 * 19 18 9 35 35 H 1.08006 * 120.75136 * 180.26154 * 20 19 18 36 36 H 1.08002 * 120.35110 * 179.75353 * 21 20 19 37 37 H 1.08005 * 119.57777 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47281 * 177.17074 * 26 24 5 39 39 H 1.09002 * 109.47130 * 297.16768 * 26 24 5 40 40 H 1.08996 * 109.47047 * 57.16949 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2462 5 6 3.2731 -1.5228 -0.6753 6 1 4.1625 -0.8932 -0.6497 7 6 3.5278 -2.7853 -1.4576 8 8 3.3367 -3.8666 -0.9429 9 7 3.9679 -2.7128 -2.7295 10 6 4.1010 -1.4916 -3.3408 11 1 3.3490 -0.7302 -3.1956 12 6 5.2030 -1.2347 -4.1463 13 7 5.2597 -0.1249 -4.8477 14 14 6.6043 -2.4669 -4.2328 15 1 6.3947 -3.3747 -5.3892 16 1 7.8903 -1.7431 -4.3984 17 1 6.6419 -3.2625 -2.9795 18 6 4.2879 -3.8786 -3.4240 19 6 3.8381 -4.0487 -4.7289 20 6 4.1680 -5.2080 -5.4086 21 6 4.9297 -6.1660 -4.7535 22 6 5.3374 -5.9333 -3.4542 23 7 5.0126 -4.8160 -2.8333 24 6 2.7747 -1.8437 0.7562 25 1 2.1406 -2.7302 0.7477 26 6 3.9626 -2.0507 1.6981 27 8 2.0159 -0.6916 1.1565 28 1 -0.3633 0.5248 0.8836 29 1 -0.3633 -1.0275 0.0126 30 1 -0.3633 0.5028 -0.8963 31 1 1.3013 -1.4337 -1.6314 32 1 2.3672 -0.0410 -2.0165 33 1 6.0292 0.0544 -5.4105 34 1 3.2430 -3.2846 -5.2067 35 1 3.8365 -5.3660 -6.4243 36 1 5.2010 -7.0836 -5.2543 37 1 5.9298 -6.6758 -2.9403 38 1 3.5976 -2.2257 2.7102 39 1 4.5429 -2.9120 1.3672 40 1 4.5934 -1.1619 1.6880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892473575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:43 Heat of formation + Delta-G solvation = -25.779630 kcal Electronic energy + Delta-G solvation = -24265.997226 eV Core-core repulsion = 20853.608945 eV Total energy + Delta-G solvation = -3412.388282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45854 -39.44174 -37.77417 -35.21937 -32.42915 -32.29962 -32.05588 -31.70362 -29.66395 -28.37205 -25.38872 -24.37659 -23.13343 -22.70089 -21.42306 -20.47966 -18.98168 -18.21891 -17.04078 -16.12334 -15.94300 -15.80102 -15.24354 -15.05193 -14.26959 -14.11672 -13.89473 -13.56318 -13.40277 -13.20386 -12.75916 -12.63676 -12.54190 -12.40743 -12.33098 -11.85349 -11.55884 -11.42797 -11.26652 -11.21624 -10.90862 -10.65827 -10.40508 -10.29581 -10.09190 -9.59655 -9.23343 -9.18086 -9.02526 -8.85206 -8.54853 -7.68578 -6.64943 -4.41934 1.65095 1.90057 3.02871 3.17376 3.33734 3.47255 3.84977 4.04213 4.12980 4.42898 4.83881 4.94656 5.06689 5.12156 5.27552 5.31377 5.46054 5.56364 5.58687 5.60867 5.72531 5.77964 5.79623 5.81444 5.95970 6.06210 6.10626 6.22189 6.25928 6.33018 6.38673 6.44215 6.55603 6.59017 6.65917 6.72341 6.99080 7.40051 7.43200 7.82537 8.02747 8.50507 8.75621 9.04108 9.40592 10.41072 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.006521 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.641681 B = 4293.005401 C = 4841.100902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.076 3.924 3 H 0.079 0.921 4 C -0.135 4.135 5 C -0.116 4.116 6 H 0.113 0.887 7 C 0.513 3.487 8 O -0.549 6.549 9 N -0.412 5.412 10 C -0.357 4.357 11 H 0.124 0.876 12 C 0.082 3.918 13 N -0.856 5.856 14 Si 0.839 3.161 15 H -0.265 1.265 16 H -0.285 1.285 17 H -0.229 1.229 18 C 0.357 3.643 19 C -0.173 4.173 20 C -0.070 4.070 21 C -0.215 4.215 22 C 0.110 3.890 23 N -0.484 5.484 24 C 0.094 3.906 25 H 0.079 0.921 26 C -0.145 4.145 27 O -0.380 6.380 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.279 0.721 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -2.947 2.384 5.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.018 3.982 3 H 0.097 0.903 4 C -0.173 4.173 5 C -0.137 4.137 6 H 0.131 0.869 7 C 0.303 3.697 8 O -0.427 6.427 9 N -0.128 5.128 10 C -0.482 4.482 11 H 0.141 0.859 12 C -0.128 4.128 13 N -0.489 5.489 14 Si 0.663 3.337 15 H -0.190 1.190 16 H -0.212 1.212 17 H -0.152 1.152 18 C 0.130 3.870 19 C -0.196 4.196 20 C -0.096 4.096 21 C -0.237 4.237 22 C -0.050 4.050 23 N -0.198 5.198 24 C 0.036 3.964 25 H 0.097 0.903 26 C -0.202 4.202 27 O -0.301 6.301 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.300 -3.086 3.634 5.798 hybrid contribution 0.723 -0.548 -1.624 1.860 sum -2.577 -3.634 2.010 4.887 Atomic orbital electron populations 1.22131 0.95378 1.02362 1.01867 1.22703 0.93906 0.96356 0.85205 0.90271 1.23232 0.96295 0.99751 0.98031 1.22698 1.00660 0.96132 0.94205 0.86905 1.20281 0.78868 0.89817 0.80730 1.90603 1.53333 1.30043 1.68752 1.41507 1.57532 1.03701 1.10071 1.19392 1.08963 0.88819 1.31066 0.85879 1.25344 0.96939 0.95768 0.94708 1.69618 1.30615 1.24008 1.24705 0.87348 0.82164 0.82123 0.82062 1.19022 1.21153 1.15191 1.18632 0.91626 0.87098 0.89615 1.21806 1.02716 0.99041 0.96067 1.21316 0.95958 0.92972 0.99325 1.21857 1.03844 1.00962 0.96990 1.22402 0.97011 0.93648 0.91898 1.67452 1.11703 1.02172 1.38476 1.22764 0.92789 0.88832 0.92010 0.90280 1.21832 0.97004 1.02378 0.99008 1.88382 1.70623 1.40825 1.30229 0.92337 0.92384 0.91580 0.90759 0.87992 0.91063 0.84125 0.85398 0.85659 0.83487 0.92357 0.90809 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.44 37.16 0.35 -1.71 16 2 C 0.08 1.15 4.15 -26.01 -0.11 1.04 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.14 -2.30 5.07 -24.70 -0.13 -2.43 16 5 C -0.12 -2.23 2.08 -89.44 -0.19 -2.41 16 6 H 0.11 2.21 8.00 -51.93 -0.42 1.80 16 7 C 0.51 11.71 6.91 -10.99 -0.08 11.64 16 8 O -0.55 -13.57 15.01 5.57 0.08 -13.48 16 9 N -0.41 -9.79 2.45 -60.71 -0.15 -9.94 16 10 C -0.36 -8.67 8.28 -14.90 -0.12 -8.79 16 11 H 0.12 2.97 5.04 -52.49 -0.26 2.70 16 12 C 0.08 2.09 5.27 -17.49 -0.09 2.00 16 13 N -0.86 -22.43 13.96 55.49 0.77 -21.65 16 14 Si 0.84 20.19 24.39 -169.99 -4.15 16.04 16 15 H -0.27 -6.32 6.80 56.52 0.38 -5.93 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.23 -5.78 5.65 56.52 0.32 -5.46 16 18 C 0.36 8.34 3.14 -154.64 -0.49 7.85 16 19 C -0.17 -3.63 7.66 -39.22 -0.30 -3.93 16 20 C -0.07 -1.22 10.10 -39.31 -0.40 -1.62 16 21 C -0.22 -3.57 10.11 -39.40 -0.40 -3.97 16 22 C 0.11 2.07 11.17 -17.56 -0.20 1.87 16 23 N -0.48 -11.16 7.53 -12.34 -0.09 -11.25 16 24 C 0.09 1.67 3.22 -25.70 -0.08 1.59 16 25 H 0.08 1.52 7.38 -51.93 -0.38 1.13 16 26 C -0.14 -2.35 9.62 37.16 0.36 -1.99 16 27 O -0.38 -6.52 10.70 -35.23 -0.38 -6.90 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.28 7.74 -51.93 -0.40 0.88 16 32 H 0.10 1.77 6.18 -51.93 -0.32 1.44 16 33 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.14 2.90 7.81 -52.49 -0.41 2.49 16 35 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.15 2.25 8.06 -52.48 -0.42 1.83 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -29.70 321.45 -6.58 -36.28 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.66 Total: 6.92 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.86 Total: -0.86 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.53 Total: -42.84 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.29 Total: -20.38 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.15 Total: 16.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.70 -6.58 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.502 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds