Wall clock time and date at job start Tue Mar 31 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.82033 * 2 1 4 4 C 1.54377 * 109.83282 * 239.10999 * 2 1 3 5 5 C 1.55457 * 102.18753 * 219.18477 * 4 2 1 6 6 H 1.09001 * 111.08992 * 276.10627 * 5 4 2 7 7 C 1.50695 * 111.14785 * 151.99139 * 5 4 2 8 8 O 1.21266 * 120.00328 * 248.37229 * 7 5 4 9 9 N 1.34780 * 119.99887 * 68.37259 * 7 5 4 10 10 C 1.37220 * 119.99874 * 355.75796 * 9 7 5 11 11 H 1.07990 * 119.99853 * 319.03082 * 10 9 7 12 12 C 1.38893 * 119.99527 * 139.03220 * 10 9 7 13 13 N 1.31412 * 119.99659 * 172.52931 * 12 10 9 14 14 Si 1.86803 * 120.00295 * 352.52922 * 12 10 9 15 15 H 1.48500 * 109.47264 * 94.20592 * 14 12 10 16 16 H 1.48496 * 109.46901 * 214.20659 * 14 12 10 17 17 H 1.48495 * 109.46975 * 334.20661 * 14 12 10 18 18 C 1.39423 * 120.00112 * 175.75827 * 9 7 5 19 19 C 1.39064 * 119.70009 * 134.31371 * 18 9 7 20 20 C 1.38377 * 119.09899 * 179.71509 * 19 18 9 21 21 C 1.38821 * 118.49475 * 0.54451 * 20 19 18 22 22 C 1.38145 * 119.31121 * 359.73674 * 21 20 19 23 23 N 1.31881 * 120.85114 * 359.97326 * 22 21 20 24 24 C 1.54943 * 100.98668 * 34.03603 * 5 4 2 25 25 H 1.09001 * 110.39085 * 82.57066 * 24 5 4 26 26 C 1.53002 * 110.30843 * 204.69205 * 24 5 4 27 27 O 1.43242 * 109.82814 * 120.88044 * 2 1 3 28 28 H 1.08997 * 109.46912 * 300.70608 * 1 2 3 29 29 H 1.08995 * 109.46992 * 180.70111 * 1 2 3 30 30 H 1.08999 * 109.47083 * 60.70784 * 1 2 3 31 31 H 1.09005 * 110.84899 * 337.32166 * 4 2 1 32 32 H 1.08994 * 110.84984 * 100.93748 * 4 2 1 33 33 H 0.97003 * 119.99754 * 180.02562 * 13 12 10 34 34 H 1.08002 * 120.44849 * 359.97438 * 19 18 9 35 35 H 1.08006 * 120.75136 * 180.26154 * 20 19 18 36 36 H 1.08002 * 120.35110 * 179.75353 * 21 20 19 37 37 H 1.08005 * 119.57777 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47281 * 177.17074 * 26 24 5 39 39 H 1.09002 * 109.47130 * 297.16768 * 26 24 5 40 40 H 1.08996 * 109.47047 * 57.16949 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2462 5 6 3.2731 -1.5228 -0.6753 6 1 4.1625 -0.8932 -0.6497 7 6 3.5278 -2.7853 -1.4576 8 8 3.3367 -3.8666 -0.9429 9 7 3.9679 -2.7128 -2.7295 10 6 4.1010 -1.4916 -3.3408 11 1 3.3490 -0.7302 -3.1956 12 6 5.2030 -1.2347 -4.1463 13 7 5.2597 -0.1249 -4.8477 14 14 6.6043 -2.4669 -4.2328 15 1 6.3947 -3.3747 -5.3892 16 1 7.8903 -1.7431 -4.3984 17 1 6.6419 -3.2625 -2.9795 18 6 4.2879 -3.8786 -3.4240 19 6 3.8381 -4.0487 -4.7289 20 6 4.1680 -5.2080 -5.4086 21 6 4.9297 -6.1660 -4.7535 22 6 5.3374 -5.9333 -3.4542 23 7 5.0126 -4.8160 -2.8333 24 6 2.7747 -1.8437 0.7562 25 1 2.1406 -2.7302 0.7477 26 6 3.9626 -2.0507 1.6981 27 8 2.0159 -0.6916 1.1565 28 1 -0.3633 0.5248 0.8836 29 1 -0.3633 -1.0275 0.0126 30 1 -0.3633 0.5028 -0.8963 31 1 1.3013 -1.4337 -1.6314 32 1 2.3672 -0.0410 -2.0165 33 1 6.0292 0.0544 -5.4105 34 1 3.2430 -3.2846 -5.2067 35 1 3.8365 -5.3660 -6.4243 36 1 5.2010 -7.0836 -5.2543 37 1 5.9298 -6.6758 -2.9403 38 1 3.5976 -2.2257 2.7102 39 1 4.5429 -2.9120 1.3672 40 1 4.5934 -1.1619 1.6880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:43 Heat of formation + Delta-G solvation = -44.165706 kcal Electronic energy + Delta-G solvation = -24266.794506 eV Core-core repulsion = 20853.608945 eV Total energy + Delta-G solvation = -3413.185562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07864 -40.89381 -39.35551 -37.00534 -34.18881 -33.64555 -33.56303 -33.24460 -31.16688 -29.66351 -27.22290 -25.82228 -24.60501 -24.21067 -22.87910 -21.85348 -20.74229 -19.85247 -18.59734 -17.76119 -17.51782 -17.35355 -16.72121 -16.61190 -15.88341 -15.61764 -15.50271 -15.10155 -14.98553 -14.76296 -14.38374 -14.09070 -13.97392 -13.81148 -13.64080 -13.35713 -13.16532 -12.86379 -12.79360 -12.66283 -12.51487 -12.11877 -12.02181 -11.70066 -11.67521 -11.42341 -10.87502 -10.79827 -10.53898 -10.46523 -10.16406 -9.37670 -8.59285 -6.34563 0.12833 0.42385 1.11281 1.22430 1.41520 1.72889 2.11713 2.24712 2.73412 2.78184 3.06047 3.49086 3.66970 3.72975 3.87163 4.03089 4.12424 4.14369 4.23008 4.27681 4.32387 4.40851 4.46022 4.49808 4.61882 4.73356 4.85191 4.86415 4.88911 4.98711 5.06633 5.11555 5.22970 5.24146 5.27669 5.33387 5.38877 5.78583 5.98017 6.07860 6.21036 6.73990 7.03822 7.23746 7.63829 8.49348 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.006521 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.641681 B = 4293.005401 C = 4841.100902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.074 3.926 3 H 0.095 0.905 4 C -0.128 4.128 5 C -0.117 4.117 6 H 0.107 0.893 7 C 0.506 3.494 8 O -0.576 6.576 9 N -0.424 5.424 10 C -0.344 4.344 11 H 0.120 0.880 12 C 0.055 3.945 13 N -0.885 5.885 14 Si 0.883 3.117 15 H -0.260 1.260 16 H -0.292 1.292 17 H -0.249 1.249 18 C 0.322 3.678 19 C -0.191 4.191 20 C -0.067 4.067 21 C -0.192 4.192 22 C 0.092 3.908 23 N -0.521 5.521 24 C 0.100 3.900 25 H 0.063 0.937 26 C -0.141 4.141 27 O -0.384 6.384 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.281 0.719 34 H 0.133 0.867 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -4.076 1.767 5.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.113 0.887 4 C -0.165 4.165 5 C -0.138 4.138 6 H 0.125 0.875 7 C 0.298 3.702 8 O -0.456 6.456 9 N -0.141 5.141 10 C -0.470 4.470 11 H 0.137 0.863 12 C -0.152 4.152 13 N -0.521 5.521 14 Si 0.709 3.291 15 H -0.185 1.185 16 H -0.219 1.219 17 H -0.173 1.173 18 C 0.096 3.904 19 C -0.214 4.214 20 C -0.093 4.093 21 C -0.213 4.213 22 C -0.067 4.067 23 N -0.235 5.235 24 C 0.043 3.957 25 H 0.081 0.919 26 C -0.198 4.198 27 O -0.305 6.305 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.151 0.849 35 H 0.187 0.813 36 H 0.194 0.806 37 H 0.196 0.804 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.504 -4.228 2.997 6.256 hybrid contribution 0.761 -0.377 -1.459 1.688 sum -2.743 -4.605 1.538 5.576 Atomic orbital electron populations 1.22105 0.93336 1.02365 1.03433 1.22881 0.95532 0.96412 0.83446 0.88710 1.23164 0.95192 0.99341 0.98848 1.22706 1.01297 0.94805 0.95020 0.87548 1.20781 0.78162 0.90579 0.80726 1.90562 1.54599 1.31244 1.69238 1.41608 1.57998 1.03956 1.10541 1.19379 1.08412 0.89323 1.29892 0.86259 1.25641 0.98012 0.96427 0.95092 1.69655 1.31296 1.25045 1.26134 0.86673 0.80571 0.80828 0.81054 1.18450 1.21917 1.17273 1.18856 0.93286 0.87598 0.90627 1.21945 1.03368 1.00528 0.95596 1.21872 0.94945 0.91499 1.00966 1.22421 1.00968 1.02024 0.95846 1.23123 0.97159 0.93062 0.93337 1.67385 1.12592 1.03534 1.40024 1.22625 0.93038 0.88591 0.91486 0.91891 1.21787 0.96349 1.02096 0.99552 1.88371 1.70621 1.40498 1.30963 0.90930 0.93166 0.89869 0.91357 0.88474 0.90924 0.84883 0.81264 0.80585 0.80417 0.90461 0.92346 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.44 71.98 0.68 -3.05 16 2 C 0.07 2.18 4.15 31.06 0.13 2.31 16 3 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 4 C -0.13 -4.38 5.07 31.91 0.16 -4.22 16 5 C -0.12 -4.61 2.08 -10.03 -0.02 -4.63 16 6 H 0.11 4.29 8.00 -2.39 -0.02 4.28 16 7 C 0.51 23.82 6.91 87.66 0.61 24.42 16 8 O -0.58 -29.36 15.01 -2.99 -0.04 -29.40 16 9 N -0.42 -20.61 2.45 -464.39 -1.14 -21.75 16 10 C -0.34 -17.07 8.28 84.01 0.70 -16.38 16 11 H 0.12 5.91 5.04 -2.92 -0.01 5.89 16 12 C 0.05 2.82 5.27 84.91 0.45 3.27 16 13 N -0.89 -46.92 13.96 21.65 0.30 -46.62 16 14 Si 0.88 42.28 24.39 68.60 1.67 43.95 16 15 H -0.26 -11.95 6.80 99.48 0.68 -11.27 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 17 H -0.25 -12.66 5.65 99.48 0.56 -12.10 16 18 C 0.32 15.06 3.14 132.90 0.42 15.48 16 19 C -0.19 -7.85 7.66 22.50 0.17 -7.68 16 20 C -0.07 -2.12 10.10 22.44 0.23 -1.90 16 21 C -0.19 -5.56 10.11 22.39 0.23 -5.33 16 22 C 0.09 3.23 11.17 84.66 0.95 4.18 16 23 N -0.52 -23.81 7.53 -192.95 -1.45 -25.27 16 24 C 0.10 3.61 3.22 31.26 0.10 3.71 16 25 H 0.06 2.47 7.38 -2.39 -0.02 2.45 16 26 C -0.14 -4.54 9.62 71.98 0.69 -3.85 16 27 O -0.38 -12.82 10.70 -148.98 -1.59 -14.41 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 2.40 7.74 -2.38 -0.02 2.38 16 32 H 0.10 3.41 6.18 -2.39 -0.01 3.40 16 33 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.13 5.51 7.81 -2.91 -0.02 5.49 16 35 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.18 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -65.47 321.45 4.09 -61.38 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.86 Total: 25.79 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.48 Total: 6.33 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -2.29 Total: -93.64 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.64 Total: -43.81 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.67 Total: 43.95 kcal Total: -65.47 4.09 -61.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.217 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds