Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 110.67233 * 2 1 4 4 C 1.54994 * 110.62019 * 237.04107 * 2 1 3 5 5 C 1.54811 * 102.09152 * 204.47413 * 4 2 1 6 6 H 1.09004 * 110.48824 * 262.06681 * 5 4 2 7 7 C 1.50704 * 110.49172 * 139.55419 * 5 4 2 8 8 O 1.21276 * 119.99546 * 330.98147 * 7 5 4 9 9 N 1.34766 * 120.00394 * 150.97887 * 7 5 4 10 10 C 1.37220 * 119.99839 * 0.02562 * 9 7 5 11 11 H 1.07993 * 119.99677 * 47.03098 * 10 9 7 12 12 C 1.38896 * 119.99851 * 227.02797 * 10 9 7 13 13 N 1.31414 * 119.99716 * 18.21652 * 12 10 9 14 14 Si 1.86795 * 119.99958 * 198.21480 * 12 10 9 15 15 H 1.48496 * 109.47061 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47349 * 300.00463 * 14 12 10 17 17 H 1.48506 * 109.47092 * 60.00100 * 14 12 10 18 18 C 1.39423 * 120.00308 * 180.02562 * 9 7 5 19 19 C 1.39069 * 119.69950 * 192.01315 * 18 9 7 20 20 C 1.38380 * 119.09730 * 179.79871 * 19 18 9 21 21 C 1.38832 * 118.49327 * 0.46870 * 20 19 18 22 22 C 1.38144 * 119.31120 * 359.75383 * 21 20 19 23 23 N 1.31885 * 120.85173 * 0.02562 * 22 21 20 24 24 C 1.54101 * 104.30788 * 20.81064 * 5 4 2 25 25 H 1.09000 * 109.87969 * 242.67655 * 24 5 4 26 26 C 1.52996 * 109.87820 * 121.51942 * 24 5 4 27 27 O 1.44048 * 107.13344 * 2.13243 * 24 5 4 28 28 H 1.09004 * 109.46645 * 182.96333 * 1 2 3 29 29 H 1.08999 * 109.47098 * 302.95987 * 1 2 3 30 30 H 1.09005 * 109.47227 * 62.96343 * 1 2 3 31 31 H 1.09000 * 110.91478 * 86.27452 * 4 2 1 32 32 H 1.08997 * 110.90627 * 322.66923 * 4 2 1 33 33 H 0.96997 * 120.00564 * 358.64524 * 13 12 10 34 34 H 1.07997 * 120.44969 * 359.97438 * 19 18 9 35 35 H 1.08003 * 120.75392 * 180.22276 * 20 19 18 36 36 H 1.07999 * 120.34372 * 179.77330 * 21 20 19 37 37 H 1.08003 * 119.57627 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47004 * 62.23575 * 26 24 5 39 39 H 1.09010 * 109.46816 * 182.23146 * 26 24 5 40 40 H 1.08998 * 109.47582 * 302.23188 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0758 -0.7892 -1.2172 5 6 3.4795 -1.2166 -0.7235 6 1 4.2410 -0.5343 -1.1017 7 6 3.7810 -2.6301 -1.1502 8 8 2.8768 -3.4245 -1.2991 9 7 5.0554 -3.0116 -1.3663 10 6 6.0785 -2.1129 -1.1973 11 1 6.1149 -1.4965 -0.3114 12 6 7.0674 -1.9963 -2.1658 13 7 6.8568 -2.4566 -3.3785 14 14 8.6963 -1.1851 -1.7443 15 1 9.5737 -1.1848 -2.9423 16 1 8.4546 0.2137 -1.3081 17 1 9.3555 -1.9387 -0.6475 18 6 5.3343 -4.3192 -1.7615 19 6 6.6462 -4.7802 -1.7411 20 6 6.9083 -6.0815 -2.1319 21 6 5.8464 -6.8770 -2.5406 22 6 4.5687 -6.3518 -2.5402 23 7 4.3484 -5.1089 -2.1581 24 6 3.3875 -1.1246 0.8120 25 1 4.0892 -0.3767 1.1812 26 6 3.6995 -2.4870 1.4343 27 8 2.0385 -0.7353 1.1337 28 1 -0.3633 -1.0264 0.0531 29 1 -0.3633 0.5591 0.8623 30 1 -0.3634 0.4672 -0.9154 31 1 2.1509 -0.1475 -2.0951 32 1 1.4550 -1.6605 -1.4259 33 1 6.0185 -2.8954 -3.5920 34 1 7.4491 -4.1323 -1.4219 35 1 7.9166 -6.4684 -2.1231 36 1 6.0174 -7.8959 -2.8553 37 1 3.7393 -6.9669 -2.8569 38 1 4.7208 -2.7751 1.1849 39 1 3.5939 -2.4244 2.5175 40 1 3.0063 -3.2321 1.0441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892473576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -32.270421 kcal Electronic energy + Delta-G solvation = -24413.546093 eV Core-core repulsion = 21000.876349 eV Total energy + Delta-G solvation = -3412.669744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42264 -39.25729 -37.55308 -35.31359 -32.53024 -32.08883 -31.90074 -31.08661 -29.28616 -28.50778 -24.97394 -24.44928 -22.87220 -22.31619 -21.20480 -20.83640 -19.27666 -17.92237 -16.68221 -16.19038 -15.83679 -15.35377 -15.14407 -14.79072 -14.64493 -14.19164 -13.97460 -13.65551 -13.23511 -13.00423 -12.83312 -12.36637 -12.28987 -12.21479 -11.85955 -11.67321 -11.58647 -11.40287 -11.29266 -10.86263 -10.63168 -10.53264 -10.41639 -10.36144 -10.03772 -9.58522 -9.43685 -9.05287 -8.94074 -8.86819 -8.11509 -7.38893 -6.76903 -4.50406 1.98957 2.21652 3.11878 3.17180 3.35618 3.63111 3.90432 4.06569 4.23015 4.65786 4.90890 4.99994 5.12723 5.25748 5.27489 5.39354 5.51572 5.55439 5.59489 5.70647 5.82385 5.87618 5.89308 5.97314 6.05719 6.11846 6.17687 6.26570 6.30894 6.35354 6.42155 6.57435 6.63661 6.67538 6.86028 7.04759 7.27151 7.32462 7.58226 7.82714 8.17896 8.57551 8.88684 9.19423 9.59237 10.35850 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.007025 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.872634 B = 3984.903708 C = 5164.173660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.067 0.933 4 C -0.138 4.138 5 C -0.129 4.129 6 H 0.112 0.888 7 C 0.508 3.492 8 O -0.519 6.519 9 N -0.394 5.394 10 C -0.447 4.447 11 H 0.091 0.909 12 C 0.021 3.979 13 N -0.847 5.847 14 Si 1.075 2.925 15 H -0.276 1.276 16 H -0.279 1.279 17 H -0.278 1.278 18 C 0.362 3.638 19 C -0.172 4.172 20 C -0.067 4.067 21 C -0.235 4.235 22 C 0.113 3.887 23 N -0.492 5.492 24 C 0.098 3.902 25 H 0.072 0.928 26 C -0.161 4.161 27 O -0.374 6.374 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.279 0.721 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 1.888 4.228 5.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 H 0.084 0.916 4 C -0.176 4.176 5 C -0.150 4.150 6 H 0.130 0.870 7 C 0.297 3.703 8 O -0.395 6.395 9 N -0.106 5.106 10 C -0.573 4.573 11 H 0.109 0.891 12 C -0.192 4.192 13 N -0.476 5.476 14 Si 0.899 3.101 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.204 1.204 18 C 0.132 3.868 19 C -0.196 4.196 20 C -0.093 4.093 21 C -0.257 4.257 22 C -0.047 4.047 23 N -0.207 5.207 24 C 0.040 3.960 25 H 0.090 0.910 26 C -0.218 4.218 27 O -0.294 6.294 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.187 2.327 3.711 4.896 hybrid contribution -0.236 -0.708 0.281 0.797 sum -2.422 1.619 3.992 4.943 Atomic orbital electron populations 1.21745 0.93470 1.02986 1.01833 1.23054 0.94902 0.94960 0.85497 0.91556 1.23188 0.95389 1.01217 0.97831 1.22574 0.99046 0.97115 0.96269 0.86963 1.20401 0.82593 0.88970 0.78336 1.90647 1.44818 1.53558 1.50459 1.41392 1.06367 1.05321 1.57541 1.20181 1.06557 1.21194 1.09392 0.89141 1.26626 1.03624 0.97266 0.91672 1.70701 1.28318 1.30872 1.17692 0.83401 0.73907 0.76373 0.76412 1.20069 1.20458 1.20375 1.19053 0.89173 0.85997 0.92561 1.21625 0.97311 0.96081 1.04605 1.21217 0.98578 0.93394 0.96149 1.21716 0.94406 1.00896 1.08683 1.22371 0.95468 0.91435 0.95388 1.67623 1.34523 1.04980 1.13616 1.22493 0.84100 0.96888 0.92514 0.90973 1.22097 1.03008 0.96144 1.00592 1.88894 1.28150 1.73513 1.38815 0.91655 0.92256 0.91337 0.90555 0.88901 0.90899 0.84345 0.86093 0.86439 0.84139 0.90485 0.92456 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.65 37.16 0.36 -1.46 16 2 C 0.07 1.12 3.98 -25.68 -0.10 1.02 16 3 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 4 C -0.14 -2.42 6.09 -24.72 -0.15 -2.57 16 5 C -0.13 -2.55 2.71 -90.24 -0.24 -2.79 16 6 H 0.11 2.24 6.96 -51.93 -0.36 1.88 16 7 C 0.51 12.06 4.55 -10.99 -0.05 12.01 16 8 O -0.52 -13.51 13.24 5.56 0.07 -13.44 16 9 N -0.39 -9.69 2.10 -60.71 -0.13 -9.82 16 10 C -0.45 -10.61 6.81 -14.90 -0.10 -10.71 16 11 H 0.09 2.04 7.61 -52.49 -0.40 1.64 16 12 C 0.02 0.50 3.35 -17.49 -0.06 0.44 16 13 N -0.85 -22.41 12.60 55.49 0.70 -21.71 16 14 Si 1.07 20.87 29.90 -169.99 -5.08 15.79 16 15 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 17 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 18 C 0.36 9.00 5.70 -154.64 -0.88 8.12 16 19 C -0.17 -3.93 7.97 -39.22 -0.31 -4.24 16 20 C -0.07 -1.31 10.17 -39.31 -0.40 -1.71 16 21 C -0.23 -4.30 10.11 -39.40 -0.40 -4.70 16 22 C 0.11 2.30 11.18 -17.56 -0.20 2.11 16 23 N -0.49 -12.10 7.99 -12.34 -0.10 -12.20 16 24 C 0.10 1.79 4.07 -26.16 -0.11 1.68 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 26 C -0.16 -3.06 8.42 37.16 0.31 -2.75 16 27 O -0.37 -6.71 10.90 -35.23 -0.38 -7.10 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.81 6.82 -51.93 -0.35 1.46 16 33 H 0.28 7.93 6.90 -40.82 -0.28 7.65 16 34 H 0.14 3.21 5.91 -52.49 -0.31 2.90 16 35 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 36 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.14 2.42 8.06 -52.48 -0.42 1.99 16 38 H 0.08 1.54 7.14 -51.93 -0.37 1.17 16 39 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.07 1.51 6.74 -51.93 -0.35 1.16 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -29.60 322.03 -7.85 -37.45 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.45 Total: 11.73 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.33 Total: -5.56 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.47 Total: -43.72 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.31 Total: -20.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.08 Total: 15.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.60 -7.85 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.181 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds