Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 110.67233 * 2 1 4 4 C 1.54994 * 110.62019 * 237.04107 * 2 1 3 5 5 C 1.54811 * 102.09152 * 204.47413 * 4 2 1 6 6 H 1.09004 * 110.48824 * 262.06681 * 5 4 2 7 7 C 1.50704 * 110.49172 * 139.55419 * 5 4 2 8 8 O 1.21276 * 119.99546 * 330.98147 * 7 5 4 9 9 N 1.34766 * 120.00394 * 150.97887 * 7 5 4 10 10 C 1.37220 * 119.99839 * 0.02562 * 9 7 5 11 11 H 1.07993 * 119.99677 * 47.03098 * 10 9 7 12 12 C 1.38896 * 119.99851 * 227.02797 * 10 9 7 13 13 N 1.31414 * 119.99716 * 18.21652 * 12 10 9 14 14 Si 1.86795 * 119.99958 * 198.21480 * 12 10 9 15 15 H 1.48496 * 109.47061 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47349 * 300.00463 * 14 12 10 17 17 H 1.48506 * 109.47092 * 60.00100 * 14 12 10 18 18 C 1.39423 * 120.00308 * 180.02562 * 9 7 5 19 19 C 1.39069 * 119.69950 * 192.01315 * 18 9 7 20 20 C 1.38380 * 119.09730 * 179.79871 * 19 18 9 21 21 C 1.38832 * 118.49327 * 0.46870 * 20 19 18 22 22 C 1.38144 * 119.31120 * 359.75383 * 21 20 19 23 23 N 1.31885 * 120.85173 * 0.02562 * 22 21 20 24 24 C 1.54101 * 104.30788 * 20.81064 * 5 4 2 25 25 H 1.09000 * 109.87969 * 242.67655 * 24 5 4 26 26 C 1.52996 * 109.87820 * 121.51942 * 24 5 4 27 27 O 1.44048 * 107.13344 * 2.13243 * 24 5 4 28 28 H 1.09004 * 109.46645 * 182.96333 * 1 2 3 29 29 H 1.08999 * 109.47098 * 302.95987 * 1 2 3 30 30 H 1.09005 * 109.47227 * 62.96343 * 1 2 3 31 31 H 1.09000 * 110.91478 * 86.27452 * 4 2 1 32 32 H 1.08997 * 110.90627 * 322.66923 * 4 2 1 33 33 H 0.96997 * 120.00564 * 358.64524 * 13 12 10 34 34 H 1.07997 * 120.44969 * 359.97438 * 19 18 9 35 35 H 1.08003 * 120.75392 * 180.22276 * 20 19 18 36 36 H 1.07999 * 120.34372 * 179.77330 * 21 20 19 37 37 H 1.08003 * 119.57627 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47004 * 62.23575 * 26 24 5 39 39 H 1.09010 * 109.46816 * 182.23146 * 26 24 5 40 40 H 1.08998 * 109.47582 * 302.23188 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0758 -0.7892 -1.2172 5 6 3.4795 -1.2166 -0.7235 6 1 4.2410 -0.5343 -1.1017 7 6 3.7810 -2.6301 -1.1502 8 8 2.8768 -3.4245 -1.2991 9 7 5.0554 -3.0116 -1.3663 10 6 6.0785 -2.1129 -1.1973 11 1 6.1149 -1.4965 -0.3114 12 6 7.0674 -1.9963 -2.1658 13 7 6.8568 -2.4566 -3.3785 14 14 8.6963 -1.1851 -1.7443 15 1 9.5737 -1.1848 -2.9423 16 1 8.4546 0.2137 -1.3081 17 1 9.3555 -1.9387 -0.6475 18 6 5.3343 -4.3192 -1.7615 19 6 6.6462 -4.7802 -1.7411 20 6 6.9083 -6.0815 -2.1319 21 6 5.8464 -6.8770 -2.5406 22 6 4.5687 -6.3518 -2.5402 23 7 4.3484 -5.1089 -2.1581 24 6 3.3875 -1.1246 0.8120 25 1 4.0892 -0.3767 1.1812 26 6 3.6995 -2.4870 1.4343 27 8 2.0385 -0.7353 1.1337 28 1 -0.3633 -1.0264 0.0531 29 1 -0.3633 0.5591 0.8623 30 1 -0.3634 0.4672 -0.9154 31 1 2.1509 -0.1475 -2.0951 32 1 1.4550 -1.6605 -1.4259 33 1 6.0185 -2.8954 -3.5920 34 1 7.4491 -4.1323 -1.4219 35 1 7.9166 -6.4684 -2.1231 36 1 6.0174 -7.8959 -2.8553 37 1 3.7393 -6.9669 -2.8569 38 1 4.7208 -2.7751 1.1849 39 1 3.5939 -2.4244 2.5175 40 1 3.0063 -3.2321 1.0441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -49.387786 kcal Electronic energy + Delta-G solvation = -24414.288358 eV Core-core repulsion = 21000.876349 eV Total energy + Delta-G solvation = -3413.412008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08835 -40.79959 -39.18165 -37.12998 -33.94880 -33.78322 -33.38457 -32.80317 -30.93734 -29.84782 -26.81529 -25.94965 -24.43863 -23.95686 -22.73078 -22.19155 -21.03241 -19.57502 -18.28857 -17.76757 -17.50180 -16.78309 -16.73939 -16.52452 -16.22208 -15.74220 -15.50951 -15.24907 -14.76618 -14.65738 -14.23249 -13.97426 -13.81231 -13.68527 -13.30828 -13.21780 -12.96257 -12.90715 -12.67219 -12.41723 -12.07638 -11.94058 -11.90060 -11.87479 -11.67975 -11.30427 -10.97386 -10.70373 -10.61755 -10.57786 -9.85247 -9.22709 -8.59986 -6.40116 0.33077 0.58274 1.56423 1.61233 1.84184 1.92610 2.26550 2.58284 2.73764 2.90512 3.26412 3.51675 3.63050 3.76206 3.91424 3.99148 4.09845 4.18093 4.27417 4.35373 4.40319 4.45840 4.46676 4.50466 4.55805 4.67188 4.76969 4.88098 4.89566 4.99944 5.01664 5.09163 5.13391 5.23928 5.27142 5.43085 5.61870 5.79477 5.92595 5.96828 6.31999 6.80463 7.12902 7.40589 7.81473 8.42934 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.007025 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.872634 B = 3984.903708 C = 5164.173660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 H 0.094 0.906 4 C -0.137 4.137 5 C -0.129 4.129 6 H 0.110 0.890 7 C 0.497 3.503 8 O -0.555 6.555 9 N -0.407 5.407 10 C -0.446 4.446 11 H 0.100 0.900 12 C -0.011 4.011 13 N -0.874 5.874 14 Si 1.120 2.880 15 H -0.286 1.286 16 H -0.257 1.257 17 H -0.260 1.260 18 C 0.330 3.670 19 C -0.191 4.191 20 C -0.066 4.066 21 C -0.213 4.213 22 C 0.094 3.906 23 N -0.532 5.532 24 C 0.103 3.897 25 H 0.097 0.903 26 C -0.151 4.151 27 O -0.386 6.386 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 2.364 4.988 5.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 H 0.112 0.888 4 C -0.175 4.175 5 C -0.150 4.150 6 H 0.128 0.872 7 C 0.288 3.712 8 O -0.434 6.434 9 N -0.119 5.119 10 C -0.572 4.572 11 H 0.118 0.882 12 C -0.217 4.217 13 N -0.505 5.505 14 Si 0.938 3.062 15 H -0.212 1.212 16 H -0.182 1.182 17 H -0.185 1.185 18 C 0.101 3.899 19 C -0.215 4.215 20 C -0.092 4.092 21 C -0.235 4.235 22 C -0.064 4.064 23 N -0.248 5.248 24 C 0.045 3.955 25 H 0.115 0.885 26 C -0.209 4.209 27 O -0.306 6.306 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.146 0.854 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.282 2.796 4.490 5.443 hybrid contribution -0.563 -1.018 0.015 1.164 sum -1.845 1.778 4.506 5.183 Atomic orbital electron populations 1.21770 0.91539 1.02500 1.03869 1.23307 0.96464 0.95312 0.83154 0.88828 1.23193 0.93687 1.00826 0.99777 1.22620 1.00200 0.94431 0.97789 0.87230 1.21061 0.82137 0.90239 0.77727 1.90601 1.45623 1.54933 1.52240 1.41616 1.06757 1.05807 1.57766 1.20445 1.06246 1.21068 1.09485 0.88250 1.27968 1.06229 0.96689 0.90806 1.70847 1.27125 1.33219 1.19268 0.82877 0.70176 0.76907 0.76260 1.21174 1.18169 1.18503 1.19359 0.90144 0.86502 0.93919 1.21692 0.96211 0.97682 1.05921 1.21722 1.00872 0.92088 0.94471 1.22187 0.92873 1.02617 1.05811 1.23013 0.97761 0.90600 0.95016 1.67573 1.35566 1.06823 1.14836 1.22493 0.85060 0.96886 0.91076 0.88524 1.21964 1.01019 0.95925 1.01958 1.88876 1.27877 1.74075 1.39820 0.93396 0.90485 0.89049 0.88954 0.91607 0.93568 0.85409 0.82278 0.81632 0.81429 0.92031 0.90114 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.65 71.98 0.69 -2.60 16 2 C 0.07 2.15 3.98 31.28 0.12 2.27 16 3 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 4 C -0.14 -4.81 6.09 31.89 0.19 -4.61 16 5 C -0.13 -5.19 2.71 -10.55 -0.03 -5.22 16 6 H 0.11 4.40 6.96 -2.38 -0.02 4.39 16 7 C 0.50 24.70 4.55 87.66 0.40 25.10 16 8 O -0.56 -30.62 13.24 -3.02 -0.04 -30.66 16 9 N -0.41 -20.79 2.10 -464.38 -0.97 -21.76 16 10 C -0.45 -21.58 6.81 84.01 0.57 -21.01 16 11 H 0.10 4.48 7.61 -2.91 -0.02 4.46 16 12 C -0.01 -0.53 3.35 84.91 0.28 -0.25 16 13 N -0.87 -47.45 12.60 21.65 0.27 -47.18 16 14 Si 1.12 41.29 29.90 68.60 2.05 43.34 16 15 H -0.29 -10.99 7.11 99.48 0.71 -10.29 16 16 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 17 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 18 C 0.33 16.94 5.70 132.91 0.76 17.70 16 19 C -0.19 -8.81 7.97 22.50 0.18 -8.64 16 20 C -0.07 -2.44 10.17 22.45 0.23 -2.21 16 21 C -0.21 -7.29 10.11 22.39 0.23 -7.06 16 22 C 0.09 3.82 11.18 84.66 0.95 4.76 16 23 N -0.53 -27.01 7.99 -192.95 -1.54 -28.55 16 24 C 0.10 3.69 4.07 30.97 0.13 3.82 16 25 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 26 C -0.15 -5.85 8.42 71.98 0.61 -5.24 16 27 O -0.39 -13.43 10.90 -148.98 -1.62 -15.05 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.07 2.68 6.82 -2.39 -0.02 2.66 16 33 H 0.25 15.08 6.90 -92.71 -0.64 14.45 16 34 H 0.13 6.02 5.91 -2.91 -0.02 6.01 16 35 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.17 4.05 8.06 -2.91 -0.02 4.02 16 37 H 0.17 5.59 8.06 -2.91 -0.02 5.56 16 38 H 0.06 2.54 7.14 -2.39 -0.02 2.52 16 39 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.04 1.64 6.74 -2.39 -0.02 1.62 16 Total: -1.00 -68.44 322.03 4.62 -63.81 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: 1.17 Total: 39.24 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 5.31 Total: -3.19 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -2.24 Total: -97.49 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.66 Total: -45.71 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.05 Total: 43.34 kcal Total: -68.44 4.62 -63.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.424 kcal (2) G-P(sol) polarization free energy of solvation -68.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds