Wall clock time and date at job start Tue Mar 31 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.55083 * 2 1 4 4 C 1.54989 * 110.61916 * 237.11968 * 2 1 3 5 5 C 1.54815 * 102.09387 * 204.31730 * 4 2 1 6 6 H 1.08996 * 110.48517 * 262.19976 * 5 4 2 7 7 C 1.53001 * 110.48890 * 139.55861 * 5 4 2 8 8 C 1.54092 * 104.18607 * 20.87894 * 5 4 2 9 9 H 1.09000 * 109.88149 * 242.45734 * 8 5 4 10 10 C 1.50703 * 109.87933 * 121.45779 * 8 5 4 11 11 O 1.21275 * 119.99852 * 250.20552 * 10 8 5 12 12 N 1.34769 * 120.00326 * 70.20073 * 10 8 5 13 13 C 1.37214 * 119.99880 * 5.75174 * 12 10 8 14 14 H 1.08005 * 119.99747 * 306.15887 * 13 12 10 15 15 C 1.38892 * 120.00277 * 126.15875 * 13 12 10 16 16 N 1.31410 * 120.00198 * 174.79210 * 15 13 12 17 17 Si 1.86804 * 119.99930 * 354.78955 * 15 13 12 18 18 H 1.48490 * 109.46954 * 96.28142 * 17 15 13 19 19 H 1.48503 * 109.46931 * 216.28467 * 17 15 13 20 20 H 1.48506 * 109.47036 * 336.27819 * 17 15 13 21 21 C 1.39423 * 120.00482 * 185.74788 * 12 10 8 22 22 C 1.39066 * 119.69410 * 16.85981 * 21 12 10 23 23 C 1.38386 * 119.10113 * 179.97438 * 22 21 12 24 24 C 1.38828 * 118.48894 * 359.73165 * 23 22 21 25 25 C 1.38154 * 119.31130 * 0.53742 * 24 23 22 26 26 N 1.31874 * 120.84925 * 359.44849 * 25 24 23 27 27 O 1.43747 * 107.29718 * 2.03223 * 8 5 4 28 28 H 1.09008 * 109.47288 * 182.88305 * 1 2 3 29 29 H 1.09007 * 109.47343 * 302.87844 * 1 2 3 30 30 H 1.09000 * 109.47599 * 62.88187 * 1 2 3 31 31 H 1.09001 * 110.90898 * 86.11843 * 4 2 1 32 32 H 1.09008 * 110.90718 * 322.51569 * 4 2 1 33 33 H 1.09007 * 109.46979 * 303.34209 * 7 5 4 34 34 H 1.09002 * 109.47436 * 63.34126 * 7 5 4 35 35 H 1.08994 * 109.47264 * 183.34834 * 7 5 4 36 36 H 0.96995 * 120.00203 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.45254 * 359.95729 * 22 21 12 38 38 H 1.07995 * 120.75793 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.34273 * 180.25915 * 24 23 22 40 40 H 1.07992 * 119.57178 * 179.72944 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2182 5 6 3.4811 -1.2121 -0.7268 6 1 4.2402 -0.5268 -1.1038 7 6 3.7896 -2.6464 -1.1611 8 6 3.3875 -1.1217 0.8086 9 1 4.0897 -0.3751 1.1795 10 6 3.6963 -2.4638 1.4207 11 8 2.8137 -3.1075 1.9474 12 7 4.9531 -2.9487 1.3828 13 6 5.9735 -2.1725 0.8938 14 1 5.8919 -1.7290 -0.0877 15 6 7.1111 -1.9570 1.6608 16 7 8.1303 -1.3000 1.1544 17 14 7.1924 -2.6010 3.4124 18 1 7.8946 -3.9093 3.4267 19 1 7.9316 -1.6330 4.2620 20 1 5.8152 -2.7725 3.9412 21 6 5.2167 -4.2390 1.8404 22 6 4.1698 -5.1401 2.0016 23 6 4.4455 -6.4178 2.4561 24 6 5.7646 -6.7532 2.7294 25 6 6.7541 -5.8056 2.5517 26 7 6.4614 -4.5955 2.1172 27 8 2.0416 -0.7347 1.1327 28 1 -0.3634 -1.0264 0.0517 29 1 -0.3634 0.5579 0.8631 30 1 -0.3634 0.4684 -0.9147 31 1 2.1483 -0.1452 -2.0959 32 1 1.4565 -1.6601 -1.4265 33 1 3.0140 -3.3143 -0.7863 34 1 3.8189 -2.6982 -2.2495 35 1 4.7556 -2.9486 -0.7568 36 1 8.9250 -1.1499 1.6900 37 1 3.1553 -4.8467 1.7754 38 1 3.6531 -7.1391 2.5905 39 1 6.0141 -7.7432 3.0815 40 1 7.7812 -6.0607 2.7672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892476565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:59 Heat of formation + Delta-G solvation = -3.671733 kcal Electronic energy + Delta-G solvation = -24650.664868 eV Core-core repulsion = 21239.235256 eV Total energy + Delta-G solvation = -3411.429611 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78567 -39.43755 -37.79723 -35.29265 -33.14868 -32.08742 -31.89801 -31.79435 -29.64925 -26.62118 -26.37540 -25.18012 -22.95829 -22.44250 -21.02414 -20.70175 -19.08373 -18.43999 -16.88179 -16.35810 -16.01418 -15.83506 -15.10264 -14.86807 -14.69987 -14.18228 -14.02287 -13.77440 -13.56276 -13.11898 -12.79040 -12.59903 -12.33093 -12.21277 -12.09433 -11.95454 -11.88534 -11.46083 -11.23989 -10.88543 -10.67644 -10.56326 -10.45207 -10.35098 -9.94067 -9.65466 -9.41486 -9.03764 -8.96221 -8.57294 -8.13472 -7.35783 -6.35286 -4.39718 1.73888 1.86428 3.25515 3.43783 3.48445 3.53124 3.61822 4.33857 4.36778 4.69761 4.79242 4.91677 5.03620 5.13215 5.27358 5.31762 5.35521 5.40633 5.55088 5.65622 5.66830 5.72549 5.84926 5.86262 5.95247 6.02132 6.05741 6.16047 6.21610 6.28313 6.32800 6.47465 6.53490 6.60523 6.82869 6.85781 7.04530 7.23033 7.58659 7.84937 8.13117 8.42743 8.91659 9.22005 9.33458 10.65396 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.007091 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.499047 B = 3947.928693 C = 4725.527597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 H 0.069 0.931 4 C -0.147 4.147 5 C -0.101 4.101 6 H 0.094 0.906 7 C -0.169 4.169 8 C 0.083 3.917 9 H 0.105 0.895 10 C 0.515 3.485 11 O -0.542 6.542 12 N -0.398 5.398 13 C -0.383 4.383 14 H 0.116 0.884 15 C 0.100 3.900 16 N -0.863 5.863 17 Si 0.947 3.053 18 H -0.261 1.261 19 H -0.322 1.322 20 H -0.292 1.292 21 C 0.360 3.640 22 C -0.207 4.207 23 C -0.062 4.062 24 C -0.227 4.227 25 C 0.124 3.876 26 N -0.496 5.496 27 O -0.353 6.353 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.276 0.724 37 H 0.166 0.834 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -2.153 -3.191 8.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.087 0.913 4 C -0.185 4.185 5 C -0.120 4.120 6 H 0.112 0.888 7 C -0.226 4.226 8 C 0.023 3.977 9 H 0.123 0.877 10 C 0.306 3.694 11 O -0.421 6.421 12 N -0.112 5.112 13 C -0.508 4.508 14 H 0.133 0.867 15 C -0.111 4.111 16 N -0.496 5.496 17 Si 0.783 3.217 18 H -0.188 1.188 19 H -0.254 1.254 20 H -0.219 1.219 21 C 0.131 3.869 22 C -0.230 4.230 23 C -0.089 4.089 24 C -0.248 4.248 25 C -0.033 4.033 26 N -0.213 5.213 27 O -0.272 6.272 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.183 0.817 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.857 -1.723 -2.903 8.552 hybrid contribution -0.051 -0.855 0.758 1.144 sum -7.908 -2.578 -2.145 8.590 Atomic orbital electron populations 1.21741 0.93451 1.02942 1.01886 1.23108 0.94937 0.95323 0.85539 0.91274 1.23312 0.96359 1.00598 0.98185 1.22281 0.97259 0.99389 0.93055 0.88760 1.22321 1.04655 0.94661 1.00996 1.22413 0.85277 0.95122 0.94908 0.87739 1.20512 0.82107 0.87359 0.79415 1.90441 1.47165 1.59581 1.44927 1.41386 1.08194 1.08745 1.52827 1.19060 0.96706 1.31096 1.03950 0.86697 1.25473 0.94284 0.91836 0.99529 1.69668 1.04667 1.37230 1.37988 0.85590 0.77890 0.77287 0.80915 1.18837 1.25395 1.21910 1.19095 0.89090 0.86555 0.92116 1.22693 1.02458 0.93241 1.04602 1.21394 0.96277 0.95743 0.95441 1.21776 0.94017 1.00911 1.08126 1.22277 0.99378 0.87761 0.93923 1.66808 1.20214 1.18858 1.15452 1.88937 1.27145 1.73138 1.37972 0.91756 0.92062 0.91423 0.90384 0.90505 0.93123 0.92863 0.88351 0.91431 0.81698 0.85604 0.85789 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.66 37.16 0.36 -1.33 16 2 C 0.07 0.99 3.97 -25.68 -0.10 0.89 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.15 -2.02 6.14 -24.72 -0.15 -2.17 16 5 C -0.10 -1.70 2.71 -89.09 -0.24 -1.95 16 6 H 0.09 1.53 7.99 -51.93 -0.42 1.12 16 7 C -0.17 -3.02 7.72 37.16 0.29 -2.73 16 8 C 0.08 1.68 3.09 -27.31 -0.08 1.59 16 9 H 0.11 2.16 7.73 -51.93 -0.40 1.76 16 10 C 0.52 11.99 5.01 -10.99 -0.06 11.94 16 11 O -0.54 -13.33 13.28 -13.89 -0.18 -13.51 16 12 N -0.40 -9.70 1.29 -60.71 -0.08 -9.78 16 13 C -0.38 -9.85 7.09 -14.90 -0.11 -9.95 16 14 H 0.12 2.95 5.80 -52.48 -0.30 2.65 16 15 C 0.10 2.70 5.20 -17.49 -0.09 2.61 16 16 N -0.86 -24.00 13.96 55.49 0.77 -23.22 16 17 Si 0.95 24.30 23.97 -169.99 -4.08 20.22 16 18 H -0.26 -6.37 5.30 56.52 0.30 -6.07 16 19 H -0.32 -8.28 7.11 56.52 0.40 -7.88 16 20 H -0.29 -8.03 6.83 56.52 0.39 -7.64 16 21 C 0.36 8.62 5.80 -154.64 -0.90 7.72 16 22 C -0.21 -4.42 8.85 -39.22 -0.35 -4.77 16 23 C -0.06 -1.10 10.17 -39.31 -0.40 -1.50 16 24 C -0.23 -3.79 10.11 -39.39 -0.40 -4.19 16 25 C 0.12 2.42 10.00 -17.56 -0.18 2.24 16 26 N -0.50 -11.75 4.51 -12.34 -0.06 -11.81 16 27 O -0.35 -6.86 10.46 -54.69 -0.57 -7.43 16 28 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.06 7.78 -51.92 -0.40 0.65 16 33 H 0.05 0.93 7.51 -51.92 -0.39 0.54 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 2.06 4.25 -51.93 -0.22 1.84 16 36 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.17 3.61 5.22 -52.69 -0.28 3.33 16 38 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.15 2.47 7.99 -52.49 -0.42 2.05 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -31.07 309.81 -7.39 -38.46 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.47 Total: 3.99 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.40 Total: -1.59 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.64 Total: -44.81 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.76 Total: -20.94 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.08 Total: 20.22 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.07 -7.39 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.786 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds