Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.55083 * 2 1 4 4 C 1.54989 * 110.61916 * 237.11968 * 2 1 3 5 5 C 1.54815 * 102.09387 * 204.31730 * 4 2 1 6 6 H 1.08996 * 110.48517 * 262.19976 * 5 4 2 7 7 C 1.53001 * 110.48890 * 139.55861 * 5 4 2 8 8 C 1.54092 * 104.18607 * 20.87894 * 5 4 2 9 9 H 1.09000 * 109.88149 * 242.45734 * 8 5 4 10 10 C 1.50703 * 109.87933 * 121.45779 * 8 5 4 11 11 O 1.21275 * 119.99852 * 250.20552 * 10 8 5 12 12 N 1.34769 * 120.00326 * 70.20073 * 10 8 5 13 13 C 1.37214 * 119.99880 * 5.75174 * 12 10 8 14 14 H 1.08005 * 119.99747 * 306.15887 * 13 12 10 15 15 C 1.38892 * 120.00277 * 126.15875 * 13 12 10 16 16 N 1.31410 * 120.00198 * 174.79210 * 15 13 12 17 17 Si 1.86804 * 119.99930 * 354.78955 * 15 13 12 18 18 H 1.48490 * 109.46954 * 96.28142 * 17 15 13 19 19 H 1.48503 * 109.46931 * 216.28467 * 17 15 13 20 20 H 1.48506 * 109.47036 * 336.27819 * 17 15 13 21 21 C 1.39423 * 120.00482 * 185.74788 * 12 10 8 22 22 C 1.39066 * 119.69410 * 16.85981 * 21 12 10 23 23 C 1.38386 * 119.10113 * 179.97438 * 22 21 12 24 24 C 1.38828 * 118.48894 * 359.73165 * 23 22 21 25 25 C 1.38154 * 119.31130 * 0.53742 * 24 23 22 26 26 N 1.31874 * 120.84925 * 359.44849 * 25 24 23 27 27 O 1.43747 * 107.29718 * 2.03223 * 8 5 4 28 28 H 1.09008 * 109.47288 * 182.88305 * 1 2 3 29 29 H 1.09007 * 109.47343 * 302.87844 * 1 2 3 30 30 H 1.09000 * 109.47599 * 62.88187 * 1 2 3 31 31 H 1.09001 * 110.90898 * 86.11843 * 4 2 1 32 32 H 1.09008 * 110.90718 * 322.51569 * 4 2 1 33 33 H 1.09007 * 109.46979 * 303.34209 * 7 5 4 34 34 H 1.09002 * 109.47436 * 63.34126 * 7 5 4 35 35 H 1.08994 * 109.47264 * 183.34834 * 7 5 4 36 36 H 0.96995 * 120.00203 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.45254 * 359.95729 * 22 21 12 38 38 H 1.07995 * 120.75793 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.34273 * 180.25915 * 24 23 22 40 40 H 1.07992 * 119.57178 * 179.72944 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2182 5 6 3.4811 -1.2121 -0.7268 6 1 4.2402 -0.5268 -1.1038 7 6 3.7896 -2.6464 -1.1611 8 6 3.3875 -1.1217 0.8086 9 1 4.0897 -0.3751 1.1795 10 6 3.6963 -2.4638 1.4207 11 8 2.8137 -3.1075 1.9474 12 7 4.9531 -2.9487 1.3828 13 6 5.9735 -2.1725 0.8938 14 1 5.8919 -1.7290 -0.0877 15 6 7.1111 -1.9570 1.6608 16 7 8.1303 -1.3000 1.1544 17 14 7.1924 -2.6010 3.4124 18 1 7.8946 -3.9093 3.4267 19 1 7.9316 -1.6330 4.2620 20 1 5.8152 -2.7725 3.9412 21 6 5.2167 -4.2390 1.8404 22 6 4.1698 -5.1401 2.0016 23 6 4.4455 -6.4178 2.4561 24 6 5.7646 -6.7532 2.7294 25 6 6.7541 -5.8056 2.5517 26 7 6.4614 -4.5955 2.1172 27 8 2.0416 -0.7347 1.1327 28 1 -0.3634 -1.0264 0.0517 29 1 -0.3634 0.5579 0.8631 30 1 -0.3634 0.4684 -0.9147 31 1 2.1483 -0.1452 -2.0959 32 1 1.4565 -1.6601 -1.4265 33 1 3.0140 -3.3143 -0.7863 34 1 3.8189 -2.6982 -2.2495 35 1 4.7556 -2.9486 -0.7568 36 1 8.9250 -1.1499 1.6900 37 1 3.1553 -4.8467 1.7754 38 1 3.6531 -7.1391 2.5905 39 1 6.0141 -7.7432 3.0815 40 1 7.7812 -6.0607 2.7672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892476565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = -21.765270 kcal Electronic energy + Delta-G solvation = -24651.449462 eV Core-core repulsion = 21239.235256 eV Total energy + Delta-G solvation = -3412.214206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44179 -40.91007 -39.36882 -37.11000 -34.58151 -34.05591 -33.37116 -33.11637 -31.19737 -27.95345 -27.80698 -27.04722 -24.52588 -24.00598 -22.26862 -22.12854 -20.83546 -20.16956 -18.40512 -17.92308 -17.77218 -17.31662 -16.59144 -16.53969 -16.43218 -15.75605 -15.61525 -15.22647 -15.12942 -14.73360 -14.34873 -14.21649 -13.89380 -13.64722 -13.50423 -13.29390 -13.05526 -12.98679 -12.93253 -12.38623 -12.31170 -12.07277 -11.91705 -11.74985 -11.59987 -11.38116 -10.91293 -10.81730 -10.61147 -10.31458 -9.91052 -9.08063 -8.41840 -6.43100 0.16796 0.31404 1.34112 1.42499 1.47955 1.64390 1.95992 2.35132 2.92575 2.97990 3.09235 3.49138 3.61800 3.76734 3.80570 3.93235 4.05079 4.23777 4.26206 4.32123 4.38420 4.42957 4.49698 4.52785 4.66971 4.74891 4.80155 4.90928 4.93604 5.03396 5.05861 5.12262 5.24291 5.30075 5.34227 5.36573 5.43329 5.82550 5.89971 5.97758 6.20225 6.67753 7.01650 7.36185 7.47345 8.60806 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.007091 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.499047 B = 3947.928693 C = 4725.527597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.056 3.944 3 H 0.085 0.915 4 C -0.134 4.134 5 C -0.099 4.099 6 H 0.100 0.900 7 C -0.159 4.159 8 C 0.083 3.917 9 H 0.089 0.911 10 C 0.508 3.492 11 O -0.564 6.564 12 N -0.409 5.409 13 C -0.364 4.364 14 H 0.108 0.892 15 C 0.067 3.933 16 N -0.894 5.894 17 Si 0.988 3.012 18 H -0.243 1.243 19 H -0.331 1.331 20 H -0.323 1.323 21 C 0.323 3.677 22 C -0.224 4.224 23 C -0.052 4.052 24 C -0.198 4.198 25 C 0.103 3.897 26 N -0.534 5.534 27 O -0.380 6.380 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.277 0.723 37 H 0.154 0.846 38 H 0.170 0.830 39 H 0.177 0.823 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -3.739 -3.778 10.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.000 4.000 3 H 0.103 0.897 4 C -0.171 4.171 5 C -0.118 4.118 6 H 0.118 0.882 7 C -0.216 4.216 8 C 0.022 3.978 9 H 0.107 0.893 10 C 0.300 3.700 11 O -0.445 6.445 12 N -0.124 5.124 13 C -0.490 4.490 14 H 0.126 0.874 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.826 3.174 18 H -0.169 1.169 19 H -0.265 1.265 20 H -0.252 1.252 21 C 0.096 3.904 22 C -0.246 4.246 23 C -0.078 4.078 24 C -0.219 4.219 25 C -0.053 4.053 26 N -0.252 5.252 27 O -0.300 6.300 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.171 0.829 38 H 0.187 0.813 39 H 0.195 0.805 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.839 -3.336 -3.497 10.074 hybrid contribution 0.166 -0.533 0.950 1.102 sum -8.673 -3.869 -2.547 9.832 Atomic orbital electron populations 1.21764 0.91342 1.02656 1.03733 1.23526 0.96625 0.95608 0.84254 0.89718 1.23292 0.93664 1.01122 0.99020 1.22309 0.99738 0.98965 0.90786 0.88202 1.22169 1.02148 0.94948 1.02382 1.22365 0.85695 0.92834 0.96885 0.89313 1.21056 0.81610 0.88306 0.79036 1.90405 1.47520 1.60575 1.46045 1.41421 1.08074 1.09377 1.53513 1.18994 0.96530 1.30160 1.03300 0.87436 1.25878 0.94637 0.92403 1.01102 1.69703 1.05317 1.39175 1.38768 0.84978 0.75915 0.77532 0.78963 1.16900 1.26468 1.25239 1.19334 0.90152 0.86895 0.94013 1.22709 1.01291 0.94784 1.05864 1.21919 0.98153 0.94661 0.93073 1.22297 0.92652 1.02227 1.04693 1.22942 1.01591 0.87218 0.93542 1.66601 1.20393 1.21284 1.16943 1.88913 1.26547 1.73883 1.40641 0.92897 0.91978 0.88001 0.86783 0.90419 0.94427 0.90213 0.91747 0.91298 0.82925 0.81257 0.80544 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.66 71.98 0.70 -2.28 16 2 C 0.06 1.55 3.97 31.27 0.12 1.67 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.13 -3.39 6.14 31.89 0.20 -3.19 16 5 C -0.10 -3.32 2.71 -9.80 -0.03 -3.35 16 6 H 0.10 3.22 7.99 -2.39 -0.02 3.20 16 7 C -0.16 -5.72 7.72 71.98 0.56 -5.16 16 8 C 0.08 3.45 3.09 30.22 0.09 3.54 16 9 H 0.09 3.88 7.73 -2.39 -0.02 3.86 16 10 C 0.51 24.62 5.01 87.66 0.44 25.06 16 11 O -0.56 -28.86 13.28 15.59 0.21 -28.65 16 12 N -0.41 -20.70 1.29 -464.38 -0.60 -21.30 16 13 C -0.36 -19.43 7.09 84.01 0.60 -18.83 16 14 H 0.11 5.76 5.80 -2.91 -0.02 5.75 16 15 C 0.07 3.72 5.20 84.91 0.44 4.17 16 16 N -0.89 -51.08 13.96 21.65 0.30 -50.78 16 17 Si 0.99 51.49 23.97 68.60 1.64 53.13 16 18 H -0.24 -11.66 5.30 99.48 0.53 -11.13 16 19 H -0.33 -17.28 7.11 99.48 0.71 -16.57 16 20 H -0.32 -18.39 6.83 99.48 0.68 -17.71 16 21 C 0.32 15.72 5.80 132.90 0.77 16.49 16 22 C -0.22 -9.49 8.85 22.50 0.20 -9.29 16 23 C -0.05 -1.66 10.17 22.45 0.23 -1.44 16 24 C -0.20 -5.76 10.11 22.39 0.23 -5.54 16 25 C 0.10 3.78 10.00 84.67 0.85 4.63 16 26 N -0.53 -25.18 4.51 -192.96 -0.87 -26.06 16 27 O -0.38 -14.98 10.46 -130.38 -1.36 -16.34 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 1.97 7.78 -2.38 -0.02 1.95 16 33 H 0.04 1.41 7.51 -2.38 -0.02 1.39 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.06 2.78 4.25 -2.39 -0.01 2.77 16 36 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.15 6.82 5.22 -6.12 -0.03 6.79 16 38 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.17 5.25 7.99 -2.91 -0.02 5.22 16 Total: -1.00 -71.60 309.81 5.53 -66.07 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.82 Total: 17.44 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.39 Total: 6.48 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -1.17 Total: -98.13 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -1.16 Total: -44.99 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 1.64 Total: 53.13 kcal Total: -71.60 5.53 -66.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.306 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds