Wall clock time and date at job start Tue Mar 31 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.82159 * 2 1 4 4 C 1.54382 * 109.83274 * 239.11728 * 2 1 3 5 5 C 1.55306 * 102.25291 * 219.12846 * 4 2 1 6 6 H 1.08995 * 111.12661 * 276.21489 * 5 4 2 7 7 C 1.52997 * 111.12386 * 152.04712 * 5 4 2 8 8 C 1.54952 * 100.94323 * 34.13311 * 5 4 2 9 9 H 1.08999 * 110.39332 * 82.50946 * 8 5 4 10 10 C 1.50696 * 110.30747 * 204.64282 * 8 5 4 11 11 O 1.21265 * 120.00407 * 83.16555 * 10 8 5 12 12 N 1.34776 * 119.99677 * 263.16355 * 10 8 5 13 13 C 1.37207 * 120.00300 * 6.41561 * 12 10 8 14 14 H 1.08004 * 120.00455 * 128.52585 * 13 12 10 15 15 C 1.38902 * 119.99917 * 308.52823 * 13 12 10 16 16 N 1.31410 * 119.99734 * 151.10605 * 15 13 12 17 17 Si 1.86799 * 119.99925 * 331.10412 * 15 13 12 18 18 H 1.48506 * 109.46754 * 95.10596 * 17 15 13 19 19 H 1.48497 * 109.47108 * 215.10789 * 17 15 13 20 20 H 1.48497 * 109.46975 * 335.10559 * 17 15 13 21 21 C 1.39431 * 119.99936 * 186.41832 * 12 10 8 22 22 C 1.39064 * 119.69845 * 12.13798 * 21 12 10 23 23 C 1.38380 * 119.09781 * 179.97438 * 22 21 12 24 24 C 1.38823 * 118.49399 * 0.02562 * 23 22 21 25 25 C 1.38148 * 119.31155 * 359.97438 * 24 23 22 26 26 N 1.31878 * 120.85199 * 359.74875 * 25 24 23 27 27 O 1.43237 * 109.83264 * 120.98188 * 2 1 3 28 28 H 1.08997 * 109.47126 * 180.88582 * 1 2 3 29 29 H 1.09000 * 109.47337 * 300.88532 * 1 2 3 30 30 H 1.09000 * 109.47277 * 60.88747 * 1 2 3 31 31 H 1.09000 * 110.84447 * 337.31490 * 4 2 1 32 32 H 1.08997 * 110.84920 * 100.93858 * 4 2 1 33 33 H 1.09004 * 109.47114 * 54.46745 * 7 5 4 34 34 H 1.09004 * 109.47161 * 174.46712 * 7 5 4 35 35 H 1.09001 * 109.47770 * 294.47128 * 7 5 4 36 36 H 0.97004 * 119.99850 * 185.00875 * 16 15 13 37 37 H 1.07999 * 120.44735 * 359.96402 * 22 21 12 38 38 H 1.08000 * 120.74820 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.34195 * 179.97438 * 24 23 22 40 40 H 1.07996 * 119.57381 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7454 -1.2464 5 6 3.2731 -1.5215 -0.6780 6 1 4.1620 -0.8914 -0.6513 7 6 3.5316 -2.8020 -1.4745 8 6 2.7748 -1.8451 0.7530 9 1 2.1405 -2.7315 0.7430 10 6 3.9448 -2.0504 1.6803 11 8 4.4914 -1.0943 2.1878 12 7 4.3837 -3.2968 1.9456 13 6 3.8536 -4.3686 1.2726 14 1 4.5071 -5.0791 0.7883 15 6 2.4764 -4.5398 1.2141 16 7 1.9334 -5.1502 0.1848 17 14 1.3964 -3.9025 2.5985 18 1 0.8851 -2.5534 2.2465 19 1 0.2528 -4.8281 2.8004 20 1 2.1926 -3.8194 3.8492 21 6 5.3764 -3.4971 2.9040 22 6 5.7301 -2.4575 3.7572 23 6 6.7165 -2.6701 4.7041 24 6 7.3178 -3.9198 4.7650 25 6 6.9166 -4.9069 3.8857 26 7 5.9697 -4.6770 2.9970 27 8 2.0159 -0.6936 1.1552 28 1 -0.3633 -1.0275 0.0159 29 1 -0.3634 0.5275 0.8819 30 1 -0.3634 0.5000 -0.8978 31 1 1.3012 -1.4335 -1.6315 32 1 2.3672 -0.0408 -2.0166 33 1 3.6371 -2.5574 -2.5315 34 1 4.4473 -3.2733 -1.1175 35 1 2.6946 -3.4876 -1.3421 36 1 0.9680 -5.2059 0.1079 37 1 5.2417 -1.4972 3.6816 38 1 7.0124 -1.8813 5.3799 39 1 8.0913 -4.1183 5.4921 40 1 7.3813 -5.8808 3.9295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892476567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:01 Heat of formation + Delta-G solvation = -6.340803 kcal Electronic energy + Delta-G solvation = -24703.077797 eV Core-core repulsion = 21291.532446 eV Total energy + Delta-G solvation = -3411.545351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57509 -39.30746 -37.81766 -35.28888 -33.12225 -32.50561 -31.66047 -31.55359 -29.65675 -26.45300 -26.30141 -25.16836 -23.01011 -22.34468 -20.87913 -20.61458 -19.29364 -18.21862 -17.24720 -16.21576 -15.74583 -15.73000 -14.95429 -14.87259 -14.25795 -14.21188 -13.93101 -13.67817 -13.34659 -13.06072 -12.90052 -12.73093 -12.46517 -12.29067 -12.04098 -11.76935 -11.69919 -11.39886 -11.16957 -11.11019 -10.75251 -10.59155 -10.28628 -10.07165 -9.95637 -9.76705 -9.41172 -9.08378 -8.95480 -8.56910 -8.32536 -7.35436 -6.66570 -4.37856 1.76479 1.99134 3.06152 3.13007 3.24217 3.27250 3.65463 3.96886 4.46780 4.51182 4.79259 4.84441 5.06457 5.20886 5.32214 5.38116 5.49217 5.57819 5.67877 5.70140 5.72260 5.80888 5.90123 5.97634 6.07011 6.11630 6.16731 6.24626 6.44064 6.51705 6.52916 6.55257 6.65416 6.86653 6.91020 7.09287 7.26287 7.42353 7.47535 7.77245 8.33738 8.43804 8.77458 9.15000 9.30748 10.35909 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.007106 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.174443 B = 3939.278897 C = 4341.837602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.075 3.925 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.100 4.100 6 H 0.078 0.922 7 C -0.138 4.138 8 C 0.063 3.937 9 H 0.124 0.876 10 C 0.508 3.492 11 O -0.541 6.541 12 N -0.393 5.393 13 C -0.351 4.351 14 H 0.117 0.883 15 C 0.086 3.914 16 N -0.832 5.832 17 Si 0.817 3.183 18 H -0.240 1.240 19 H -0.274 1.274 20 H -0.262 1.262 21 C 0.359 3.641 22 C -0.219 4.219 23 C -0.066 4.066 24 C -0.230 4.230 25 C 0.119 3.881 26 N -0.493 5.493 27 O -0.361 6.361 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.280 0.720 37 H 0.172 0.828 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 5.522 -0.642 5.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 H 0.094 0.906 4 C -0.183 4.183 5 C -0.119 4.119 6 H 0.096 0.904 7 C -0.195 4.195 8 C 0.003 3.997 9 H 0.141 0.859 10 C 0.299 3.701 11 O -0.421 6.421 12 N -0.106 5.106 13 C -0.477 4.477 14 H 0.134 0.866 15 C -0.123 4.123 16 N -0.465 5.465 17 Si 0.638 3.362 18 H -0.164 1.164 19 H -0.199 1.199 20 H -0.186 1.186 21 C 0.130 3.870 22 C -0.242 4.242 23 C -0.092 4.092 24 C -0.252 4.252 25 C -0.041 4.041 26 N -0.207 5.207 27 O -0.280 6.280 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.189 0.811 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.403 5.298 -0.921 5.392 hybrid contribution -0.313 0.593 1.296 1.459 sum 0.090 5.891 0.375 5.904 Atomic orbital electron populations 1.22143 0.95319 1.02646 1.01727 1.22680 0.93973 0.96159 0.85516 0.90626 1.23262 0.98120 0.99367 0.97554 1.22620 0.97690 0.98459 0.93110 0.90383 1.21726 1.05507 0.95576 0.96733 1.23386 0.92192 0.91408 0.92717 0.85927 1.20616 0.85434 0.81952 0.82123 1.90343 1.58327 1.41335 1.52067 1.41412 1.31460 1.06882 1.30803 1.18954 0.91150 1.06676 1.30953 0.86552 1.25282 0.96871 0.94554 0.95613 1.69705 1.12556 1.38806 1.25432 0.87945 0.81926 0.81019 0.85274 1.16380 1.19921 1.18606 1.19127 0.90627 0.89318 0.87902 1.23062 1.01154 1.03387 0.96572 1.21389 0.94716 0.96491 0.96574 1.21843 1.04530 0.95212 1.03574 1.22412 0.92362 0.98610 0.90691 1.67154 1.09012 1.22004 1.22522 1.88459 1.69518 1.40411 1.29614 0.92100 0.92255 0.91716 0.90015 0.90288 0.94072 0.91451 0.89103 0.90921 0.81095 0.85794 0.86035 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.44 37.16 0.35 -1.93 16 2 C 0.07 1.24 4.16 -26.01 -0.11 1.13 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.15 -2.25 6.03 -24.78 -0.15 -2.40 16 5 C -0.10 -1.89 3.10 -88.37 -0.27 -2.16 16 6 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 7 C -0.14 -2.62 8.39 37.16 0.31 -2.31 16 8 C 0.06 1.40 1.46 -26.85 -0.04 1.36 16 9 H 0.12 2.88 2.45 -51.93 -0.13 2.76 16 10 C 0.51 12.51 5.63 -10.99 -0.06 12.45 16 11 O -0.54 -13.69 13.40 -10.98 -0.15 -13.83 16 12 N -0.39 -9.89 2.15 -60.71 -0.13 -10.02 16 13 C -0.35 -9.04 7.13 -14.90 -0.11 -9.14 16 14 H 0.12 3.23 8.06 -52.48 -0.42 2.81 16 15 C 0.09 2.15 3.12 -17.49 -0.05 2.09 16 16 N -0.83 -20.54 12.51 55.49 0.69 -19.85 16 17 Si 0.82 19.72 25.34 -169.99 -4.31 15.41 16 18 H -0.24 -5.67 5.70 56.52 0.32 -5.35 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.36 8.70 7.24 -154.63 -1.12 7.58 16 22 C -0.22 -4.82 8.92 -39.22 -0.35 -5.17 16 23 C -0.07 -1.17 10.17 -39.31 -0.40 -1.57 16 24 C -0.23 -3.77 10.11 -39.40 -0.40 -4.17 16 25 C 0.12 2.17 11.18 -17.56 -0.20 1.98 16 26 N -0.49 -11.29 9.57 -12.34 -0.12 -11.41 16 27 O -0.36 -7.85 9.67 -51.78 -0.50 -8.35 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.22 7.74 -51.93 -0.40 0.81 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.40 7.46 -51.93 -0.39 1.01 16 35 H 0.09 1.88 6.15 -51.93 -0.32 1.56 16 36 H 0.28 6.49 8.32 -40.82 -0.34 6.15 16 37 H 0.17 3.96 4.95 -54.03 -0.27 3.69 16 38 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 314.82 15.07 4.74 4.74 Total: -1.00 -28.85 314.82 -7.72 -36.57 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.36 Total: 8.98 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.59 Total: -2.25 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.45 Total: -41.28 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.65 Total: -22.18 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.31 Total: 15.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.85 -7.72 -36.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.229 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds