Wall clock time and date at job start Tue Mar 31 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.82159 * 2 1 4 4 C 1.54382 * 109.83274 * 239.11728 * 2 1 3 5 5 C 1.55306 * 102.25291 * 219.12846 * 4 2 1 6 6 H 1.08995 * 111.12661 * 276.21489 * 5 4 2 7 7 C 1.52997 * 111.12386 * 152.04712 * 5 4 2 8 8 C 1.54952 * 100.94323 * 34.13311 * 5 4 2 9 9 H 1.08999 * 110.39332 * 82.50946 * 8 5 4 10 10 C 1.50696 * 110.30747 * 204.64282 * 8 5 4 11 11 O 1.21265 * 120.00407 * 83.16555 * 10 8 5 12 12 N 1.34776 * 119.99677 * 263.16355 * 10 8 5 13 13 C 1.37207 * 120.00300 * 6.41561 * 12 10 8 14 14 H 1.08004 * 120.00455 * 128.52585 * 13 12 10 15 15 C 1.38902 * 119.99917 * 308.52823 * 13 12 10 16 16 N 1.31410 * 119.99734 * 151.10605 * 15 13 12 17 17 Si 1.86799 * 119.99925 * 331.10412 * 15 13 12 18 18 H 1.48506 * 109.46754 * 95.10596 * 17 15 13 19 19 H 1.48497 * 109.47108 * 215.10789 * 17 15 13 20 20 H 1.48497 * 109.46975 * 335.10559 * 17 15 13 21 21 C 1.39431 * 119.99936 * 186.41832 * 12 10 8 22 22 C 1.39064 * 119.69845 * 12.13798 * 21 12 10 23 23 C 1.38380 * 119.09781 * 179.97438 * 22 21 12 24 24 C 1.38823 * 118.49399 * 0.02562 * 23 22 21 25 25 C 1.38148 * 119.31155 * 359.97438 * 24 23 22 26 26 N 1.31878 * 120.85199 * 359.74875 * 25 24 23 27 27 O 1.43237 * 109.83264 * 120.98188 * 2 1 3 28 28 H 1.08997 * 109.47126 * 180.88582 * 1 2 3 29 29 H 1.09000 * 109.47337 * 300.88532 * 1 2 3 30 30 H 1.09000 * 109.47277 * 60.88747 * 1 2 3 31 31 H 1.09000 * 110.84447 * 337.31490 * 4 2 1 32 32 H 1.08997 * 110.84920 * 100.93858 * 4 2 1 33 33 H 1.09004 * 109.47114 * 54.46745 * 7 5 4 34 34 H 1.09004 * 109.47161 * 174.46712 * 7 5 4 35 35 H 1.09001 * 109.47770 * 294.47128 * 7 5 4 36 36 H 0.97004 * 119.99850 * 185.00875 * 16 15 13 37 37 H 1.07999 * 120.44735 * 359.96402 * 22 21 12 38 38 H 1.08000 * 120.74820 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.34195 * 179.97438 * 24 23 22 40 40 H 1.07996 * 119.57381 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7454 -1.2464 5 6 3.2731 -1.5215 -0.6780 6 1 4.1620 -0.8914 -0.6513 7 6 3.5316 -2.8020 -1.4745 8 6 2.7748 -1.8451 0.7530 9 1 2.1405 -2.7315 0.7430 10 6 3.9448 -2.0504 1.6803 11 8 4.4914 -1.0943 2.1878 12 7 4.3837 -3.2968 1.9456 13 6 3.8536 -4.3686 1.2726 14 1 4.5071 -5.0791 0.7883 15 6 2.4764 -4.5398 1.2141 16 7 1.9334 -5.1502 0.1848 17 14 1.3964 -3.9025 2.5985 18 1 0.8851 -2.5534 2.2465 19 1 0.2528 -4.8281 2.8004 20 1 2.1926 -3.8194 3.8492 21 6 5.3764 -3.4971 2.9040 22 6 5.7301 -2.4575 3.7572 23 6 6.7165 -2.6701 4.7041 24 6 7.3178 -3.9198 4.7650 25 6 6.9166 -4.9069 3.8857 26 7 5.9697 -4.6770 2.9970 27 8 2.0159 -0.6936 1.1552 28 1 -0.3633 -1.0275 0.0159 29 1 -0.3634 0.5275 0.8819 30 1 -0.3634 0.5000 -0.8978 31 1 1.3012 -1.4335 -1.6315 32 1 2.3672 -0.0408 -2.0166 33 1 3.6371 -2.5574 -2.5315 34 1 4.4473 -3.2733 -1.1175 35 1 2.6946 -3.4876 -1.3421 36 1 0.9680 -5.2059 0.1079 37 1 5.2417 -1.4972 3.6816 38 1 7.0124 -1.8813 5.3799 39 1 8.0913 -4.1183 5.4921 40 1 7.3813 -5.8808 3.9295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892476567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:00 Heat of formation + Delta-G solvation = -23.293981 kcal Electronic energy + Delta-G solvation = -24703.812942 eV Core-core repulsion = 21291.532446 eV Total energy + Delta-G solvation = -3412.280496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.27339 -40.82831 -39.43758 -37.13757 -34.73215 -34.21912 -33.18906 -33.00532 -31.23428 -27.98579 -27.68425 -27.03863 -24.58882 -23.92171 -22.30195 -22.09513 -20.96442 -20.00961 -18.91252 -17.93963 -17.32387 -17.21041 -16.70048 -16.47984 -16.09518 -15.82451 -15.33842 -15.26730 -14.81886 -14.77187 -14.52908 -14.44235 -13.93296 -13.83072 -13.46906 -13.40098 -12.99718 -12.94855 -12.79306 -12.60477 -12.34618 -12.18624 -12.11010 -11.58965 -11.48817 -11.43094 -11.00573 -10.69980 -10.67676 -10.20732 -10.06960 -9.06598 -8.62594 -6.34253 0.18109 0.47340 1.13102 1.18275 1.26278 1.48239 1.95118 2.03755 2.63647 2.98604 3.13653 3.41655 3.67313 3.82821 3.83093 4.03782 4.12719 4.19916 4.25505 4.29191 4.39590 4.41144 4.55430 4.60406 4.71020 4.75603 4.85725 4.97145 5.00076 5.09451 5.10880 5.15739 5.28656 5.35433 5.40481 5.48099 5.57068 5.75629 5.99450 6.07668 6.30821 6.65351 6.87740 7.38325 7.48751 8.43696 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.007106 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.174443 B = 3939.278897 C = 4341.837602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.059 3.941 3 H 0.092 0.908 4 C -0.132 4.132 5 C -0.101 4.101 6 H 0.073 0.927 7 C -0.127 4.127 8 C 0.061 3.939 9 H 0.110 0.890 10 C 0.496 3.504 11 O -0.562 6.562 12 N -0.404 5.404 13 C -0.351 4.351 14 H 0.086 0.914 15 C 0.079 3.921 16 N -0.840 5.840 17 Si 0.849 3.151 18 H -0.235 1.235 19 H -0.261 1.261 20 H -0.294 1.294 21 C 0.317 3.683 22 C -0.243 4.243 23 C -0.059 4.059 24 C -0.203 4.203 25 C 0.108 3.892 26 N -0.528 5.528 27 O -0.390 6.390 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.288 0.712 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.175 0.825 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.137 6.227 -0.407 6.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.002 3.998 3 H 0.110 0.890 4 C -0.169 4.169 5 C -0.120 4.120 6 H 0.091 0.909 7 C -0.184 4.184 8 C 0.001 3.999 9 H 0.127 0.873 10 C 0.287 3.713 11 O -0.444 6.444 12 N -0.117 5.117 13 C -0.477 4.477 14 H 0.103 0.897 15 C -0.130 4.130 16 N -0.474 5.474 17 Si 0.672 3.328 18 H -0.159 1.159 19 H -0.185 1.185 20 H -0.220 1.220 21 C 0.090 3.910 22 C -0.266 4.266 23 C -0.085 4.085 24 C -0.223 4.223 25 C -0.051 4.051 26 N -0.243 5.243 27 O -0.310 6.310 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.134 0.866 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.170 0.830 38 H 0.181 0.819 39 H 0.193 0.807 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.829 5.989 -0.695 6.086 hybrid contribution -0.269 0.339 1.341 1.409 sum 0.560 6.328 0.646 6.386 Atomic orbital electron populations 1.22137 0.93368 1.02286 1.03548 1.23105 0.95612 0.96525 0.84549 0.89000 1.23271 0.96319 0.99560 0.97767 1.22642 0.99119 0.98716 0.91509 0.90897 1.21581 1.03099 0.95125 0.98633 1.23307 0.91293 0.91371 0.93950 0.87307 1.21141 0.86163 0.81683 0.82319 1.90312 1.59375 1.41649 1.53024 1.41436 1.32144 1.06723 1.31405 1.18526 0.90920 1.06602 1.31661 0.89660 1.25364 0.96886 0.94683 0.96078 1.69703 1.13251 1.38930 1.25508 0.87517 0.81130 0.81396 0.82795 1.15852 1.18519 1.22033 1.19393 0.91572 0.90743 0.89297 1.23010 1.03101 1.02263 0.98199 1.21871 0.92830 0.98380 0.95426 1.22386 1.03817 0.93468 1.02679 1.23204 0.91159 1.00868 0.89841 1.67134 1.10663 1.21919 1.24600 1.88422 1.69676 1.40419 1.32502 0.93441 0.92361 0.88056 0.89245 0.86614 0.90724 0.94477 0.90900 0.90064 0.82957 0.81858 0.80723 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.44 71.98 0.68 -3.40 16 2 C 0.06 1.86 4.16 31.06 0.13 1.99 16 3 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 4 C -0.13 -3.78 6.03 31.86 0.19 -3.59 16 5 C -0.10 -3.81 3.10 -9.33 -0.03 -3.84 16 6 H 0.07 2.80 8.05 -2.39 -0.02 2.78 16 7 C -0.13 -4.86 8.39 71.98 0.60 -4.25 16 8 C 0.06 2.78 1.46 30.51 0.04 2.83 16 9 H 0.11 5.26 2.45 -2.39 -0.01 5.25 16 10 C 0.50 25.54 5.63 87.66 0.49 26.04 16 11 O -0.56 -29.85 13.40 12.84 0.17 -29.68 16 12 N -0.40 -21.38 2.15 -464.37 -1.00 -22.38 16 13 C -0.35 -18.98 7.13 84.01 0.60 -18.38 16 14 H 0.09 5.07 8.06 -2.91 -0.02 5.05 16 15 C 0.08 4.06 3.12 84.92 0.26 4.33 16 16 N -0.84 -42.25 12.51 21.65 0.27 -41.98 16 17 Si 0.85 41.75 25.34 68.60 1.74 43.49 16 18 H -0.23 -11.28 5.70 99.48 0.57 -10.71 16 19 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.29 -15.97 7.11 99.48 0.71 -15.27 16 21 C 0.32 15.94 7.24 132.90 0.96 16.90 16 22 C -0.24 -10.91 8.92 22.50 0.20 -10.71 16 23 C -0.06 -1.98 10.17 22.44 0.23 -1.75 16 24 C -0.20 -5.88 10.11 22.39 0.23 -5.66 16 25 C 0.11 3.75 11.18 84.66 0.95 4.69 16 26 N -0.53 -24.65 9.57 -192.95 -1.85 -26.50 16 27 O -0.39 -17.13 9.67 -133.15 -1.29 -18.42 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.43 7.74 -2.39 -0.02 2.42 16 32 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.04 1.60 7.46 -2.38 -0.02 1.58 16 35 H 0.07 3.06 6.15 -2.39 -0.01 3.04 16 36 H 0.29 13.40 8.32 -92.71 -0.77 12.63 16 37 H 0.15 7.39 4.95 -27.36 -0.14 7.25 16 38 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 40 H 0.19 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -67.89 314.82 4.38 -63.51 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.79 Total: 26.75 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.54 Total: 5.20 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -2.58 Total: -90.86 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -1.11 Total: -48.09 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.74 Total: 43.49 kcal Total: -67.89 4.38 -63.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.220 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds