Wall clock time and date at job start Tue Mar 31 2020 06:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34784 * 120.00177 * 2 1 4 4 O 1.21587 * 119.99927 * 359.97438 * 3 2 1 5 5 C 1.47521 * 119.99715 * 180.02562 * 3 2 1 6 6 C 1.39685 * 120.20150 * 359.97438 * 5 3 2 7 7 C 1.37800 * 119.91975 * 179.97438 * 6 5 3 8 8 C 1.38564 * 120.32866 * 359.97438 * 7 6 5 9 9 C 1.38022 * 120.40814 * 0.02562 * 8 7 6 10 10 C 1.38852 * 120.06883 * 0.26003 * 9 8 7 11 11 N 1.39285 * 120.16632 * 179.72020 * 10 9 8 12 12 C 1.46501 * 119.99680 * 270.00183 * 11 10 9 13 13 C 1.34772 * 120.00028 * 89.99666 * 11 10 9 14 14 O 1.21277 * 120.00176 * 0.02562 * 13 11 10 15 15 C 1.50705 * 119.99849 * 180.02562 * 13 11 10 16 16 H 1.09004 * 109.46845 * 299.99559 * 15 13 11 17 17 C 1.52993 * 109.47123 * 60.00110 * 15 13 11 18 18 C 1.50696 * 109.46819 * 180.02562 * 15 13 11 19 19 H 1.08000 * 120.00470 * 0.02562 * 18 15 13 20 20 C 1.37877 * 119.99932 * 179.97438 * 18 15 13 21 21 N 1.31518 * 120.00019 * 180.02562 * 20 18 15 22 22 Si 1.86800 * 120.00050 * 359.97438 * 20 18 15 23 23 H 1.48502 * 109.46902 * 89.99970 * 22 20 18 24 24 H 1.48491 * 109.47440 * 210.00085 * 22 20 18 25 25 H 1.48497 * 109.47053 * 330.00350 * 22 20 18 26 26 H 1.09001 * 109.47186 * 300.00303 * 1 2 3 27 27 H 1.08996 * 109.47377 * 60.00284 * 1 2 3 28 28 H 1.08998 * 109.47464 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99920 * 179.97438 * 2 1 3 30 30 H 1.08001 * 120.03883 * 359.95140 * 6 5 3 31 31 H 1.07994 * 119.83515 * 179.97438 * 7 6 5 32 32 H 1.08007 * 119.79226 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.96299 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47177 * 89.99778 * 12 11 10 35 35 H 1.09002 * 109.46848 * 209.99611 * 12 11 10 36 36 H 1.08992 * 109.47301 * 329.99907 * 12 11 10 37 37 H 1.08999 * 109.47262 * 299.99735 * 17 15 13 38 38 H 1.08992 * 109.47384 * 60.00135 * 17 15 13 39 39 H 1.09008 * 109.46914 * 179.97438 * 17 15 13 40 40 H 0.96997 * 119.99546 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6141 1.1671 -0.0006 6 6 4.3167 -0.0402 -0.0006 7 6 5.6946 -0.0335 -0.0016 8 6 6.3885 1.1659 -0.0033 9 6 5.7080 2.3667 -0.0033 10 6 4.3196 2.3795 0.0038 11 7 3.6309 3.5901 0.0097 12 6 3.2751 4.2242 1.2815 13 6 3.2918 4.1781 -1.1546 14 8 3.5859 3.6530 -2.2075 15 6 2.5471 5.4883 -1.1482 16 1 1.5964 5.3633 -0.6297 17 6 3.3848 6.5476 -0.4294 18 6 2.2909 5.9274 -2.5669 19 1 2.6327 5.3184 -3.3908 20 6 1.6192 7.1060 -2.8131 21 7 1.3952 7.4889 -4.0512 22 14 1.0260 8.1582 -1.3882 23 1 2.0857 9.1295 -1.0155 24 1 -0.1994 8.8933 -1.7921 25 1 0.7203 7.2883 -0.2242 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8401 0.0004 30 1 3.7805 -0.9777 0.0006 31 1 6.2365 -0.9677 -0.0012 32 1 7.4686 1.1610 -0.0045 33 1 6.2561 3.2973 -0.0041 34 1 4.0801 4.8897 1.5934 35 1 2.3569 4.7983 1.1570 36 1 3.1237 3.4567 2.0404 37 1 3.5697 6.2298 0.5967 38 1 4.3353 6.6726 -0.9479 39 1 2.8463 7.4954 -0.4252 40 1 0.9223 8.3179 -4.2244 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894127694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:28 Heat of formation + Delta-G solvation = -11.924276 kcal Electronic energy + Delta-G solvation = -23963.168492 eV Core-core repulsion = 20551.381023 eV Total energy + Delta-G solvation = -3411.787468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60630 -38.90768 -37.94450 -35.09033 -34.37147 -33.77499 -31.44249 -31.34502 -29.72979 -26.99004 -26.30183 -24.92419 -23.77675 -23.37810 -21.46805 -20.47437 -18.97659 -17.95949 -16.83227 -16.35935 -16.15727 -15.55008 -15.21572 -15.09416 -14.97869 -14.77150 -14.20668 -13.80753 -13.37738 -13.29969 -13.09607 -12.94453 -12.43402 -12.33947 -12.27610 -12.21449 -12.02807 -11.56069 -11.43216 -11.32817 -10.84526 -10.45400 -10.19412 -9.82446 -9.50415 -9.16108 -9.00659 -8.97343 -8.86987 -8.53089 -8.46470 -8.21203 -5.95075 -3.93832 0.83023 1.25314 2.97461 3.20296 3.30636 3.40364 3.43785 3.52923 3.70440 3.83834 4.47696 4.66082 4.71764 4.90236 5.11242 5.28748 5.32153 5.35215 5.36890 5.48977 5.60367 5.70717 5.76451 5.81128 5.85317 6.04475 6.09914 6.28089 6.31903 6.38218 6.42424 6.44181 6.54396 6.63400 6.81140 7.31909 7.35039 7.48596 7.65778 8.03979 8.33624 8.65177 9.19358 9.25191 9.64587 11.18163 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.005674 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.431742 B = 4933.544323 C = 5629.709867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.738 5.738 3 C 0.553 3.447 4 O -0.505 6.505 5 C -0.138 4.138 6 C -0.085 4.085 7 C -0.132 4.132 8 C -0.088 4.088 9 C -0.121 4.121 10 C 0.217 3.783 11 N -0.587 5.587 12 C 0.098 3.902 13 C 0.549 3.451 14 O -0.526 6.526 15 C 0.002 3.998 16 H 0.056 0.944 17 C -0.157 4.157 18 C -0.500 4.500 19 H 0.091 0.909 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.883 3.117 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.266 1.266 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.397 0.603 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -16.727 14.992 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.392 5.392 3 C 0.339 3.661 4 O -0.379 6.379 5 C -0.142 4.142 6 C -0.104 4.104 7 C -0.150 4.150 8 C -0.107 4.107 9 C -0.140 4.140 10 C 0.125 3.875 11 N -0.320 5.320 12 C -0.044 4.044 13 C 0.341 3.659 14 O -0.399 6.399 15 C -0.019 4.019 16 H 0.074 0.926 17 C -0.214 4.214 18 C -0.538 4.538 19 H 0.109 0.891 20 C -0.132 4.132 21 N -0.538 5.538 22 Si 0.714 3.286 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.191 1.191 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.231 0.769 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.474 -16.037 14.265 22.150 hybrid contribution -0.186 0.165 0.694 0.737 sum 5.287 -15.872 14.958 22.442 Atomic orbital electron populations 1.21502 0.79328 1.01843 1.02662 1.45684 1.07734 1.08391 1.77351 1.18161 0.87092 0.83928 0.76869 1.90867 1.69520 1.30579 1.46922 1.20308 0.93240 0.94042 1.06639 1.21137 0.94624 0.96235 0.98392 1.21037 0.93839 0.98318 1.01827 1.21210 1.00151 0.91929 0.97378 1.21472 0.93196 0.99036 1.00333 1.17571 0.90231 0.85472 0.94205 1.45410 1.58565 1.20112 1.07918 1.21787 1.01045 0.97282 0.84248 1.21264 0.76832 0.86647 0.81125 1.90570 1.53252 1.65337 1.30788 1.19239 0.94741 0.88122 0.99836 0.92597 1.22374 1.00980 0.99382 0.98651 1.20947 1.36085 1.06809 0.89973 0.89066 1.24960 0.95498 0.97290 0.95409 1.69891 1.41954 1.23213 1.18702 0.86918 0.77634 0.80788 0.83295 1.20539 1.22380 1.19133 0.92259 0.91937 0.90906 0.76906 0.85726 0.85413 0.85323 0.85064 0.92808 0.89918 0.92565 0.93658 0.92583 0.93389 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.70 59.84 0.64 1.60 16 2 N -0.74 -8.79 5.66 -68.16 -0.39 -9.18 16 3 C 0.55 9.20 7.76 -12.47 -0.10 9.10 16 4 O -0.50 -10.54 13.72 5.29 0.07 -10.47 16 5 C -0.14 -2.13 5.89 -104.81 -0.62 -2.74 16 6 C -0.08 -0.94 9.53 -39.20 -0.37 -1.31 16 7 C -0.13 -1.30 10.02 -39.62 -0.40 -1.70 16 8 C -0.09 -0.96 10.03 -39.54 -0.40 -1.36 16 9 C -0.12 -1.73 9.96 -39.43 -0.39 -2.12 16 10 C 0.22 3.74 4.44 -83.48 -0.37 3.37 16 11 N -0.59 -11.46 1.52 -120.60 -0.18 -11.64 16 12 C 0.10 1.56 8.07 59.85 0.48 2.05 16 13 C 0.55 13.54 6.09 -10.98 -0.07 13.47 16 14 O -0.53 -14.97 15.43 5.56 0.09 -14.88 16 15 C 0.00 0.05 1.42 -92.93 -0.13 -0.08 16 16 H 0.06 1.46 6.46 -51.93 -0.34 1.12 16 17 C -0.16 -3.44 8.31 37.15 0.31 -3.13 16 18 C -0.50 -15.40 8.96 -34.44 -0.31 -15.71 16 19 H 0.09 3.19 7.00 -52.49 -0.37 2.82 16 20 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 21 N -0.90 -28.90 13.96 55.43 0.77 -28.13 16 22 Si 0.88 22.42 24.38 -169.99 -4.14 18.28 16 23 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 24 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.40 3.29 6.86 -40.82 -0.28 3.01 16 30 H 0.12 0.93 6.40 -52.49 -0.34 0.59 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.05 0.73 6.95 -51.93 -0.36 0.36 16 35 H 0.08 1.42 6.01 -51.93 -0.31 1.10 16 36 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 37 H 0.04 0.80 4.53 -51.93 -0.24 0.57 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.09 3.28 -51.92 -0.17 0.92 16 40 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -39.29 322.39 -5.69 -44.99 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.96 Total: 2.74 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.82 Total: 3.44 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.20 Total: -48.95 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: 0.16 Total: -25.35 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.14 Total: 18.28 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -39.29 -5.69 -44.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894127694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.062 kcal (2) G-P(sol) polarization free energy of solvation -39.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds