Wall clock time and date at job start Tue Mar 31 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34784 * 120.00177 * 2 1 4 4 O 1.21587 * 119.99927 * 359.97438 * 3 2 1 5 5 C 1.47521 * 119.99715 * 180.02562 * 3 2 1 6 6 C 1.39685 * 120.20150 * 359.97438 * 5 3 2 7 7 C 1.37800 * 119.91975 * 179.97438 * 6 5 3 8 8 C 1.38564 * 120.32866 * 359.97438 * 7 6 5 9 9 C 1.38022 * 120.40814 * 0.02562 * 8 7 6 10 10 C 1.38852 * 120.06883 * 0.26003 * 9 8 7 11 11 N 1.39285 * 120.16632 * 179.72020 * 10 9 8 12 12 C 1.46501 * 119.99680 * 270.00183 * 11 10 9 13 13 C 1.34772 * 120.00028 * 89.99666 * 11 10 9 14 14 O 1.21277 * 120.00176 * 0.02562 * 13 11 10 15 15 C 1.50705 * 119.99849 * 180.02562 * 13 11 10 16 16 H 1.09004 * 109.46845 * 299.99559 * 15 13 11 17 17 C 1.52993 * 109.47123 * 60.00110 * 15 13 11 18 18 C 1.50696 * 109.46819 * 180.02562 * 15 13 11 19 19 H 1.08000 * 120.00470 * 0.02562 * 18 15 13 20 20 C 1.37877 * 119.99932 * 179.97438 * 18 15 13 21 21 N 1.31518 * 120.00019 * 180.02562 * 20 18 15 22 22 Si 1.86800 * 120.00050 * 359.97438 * 20 18 15 23 23 H 1.48502 * 109.46902 * 89.99970 * 22 20 18 24 24 H 1.48491 * 109.47440 * 210.00085 * 22 20 18 25 25 H 1.48497 * 109.47053 * 330.00350 * 22 20 18 26 26 H 1.09001 * 109.47186 * 300.00303 * 1 2 3 27 27 H 1.08996 * 109.47377 * 60.00284 * 1 2 3 28 28 H 1.08998 * 109.47464 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99920 * 179.97438 * 2 1 3 30 30 H 1.08001 * 120.03883 * 359.95140 * 6 5 3 31 31 H 1.07994 * 119.83515 * 179.97438 * 7 6 5 32 32 H 1.08007 * 119.79226 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.96299 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47177 * 89.99778 * 12 11 10 35 35 H 1.09002 * 109.46848 * 209.99611 * 12 11 10 36 36 H 1.08992 * 109.47301 * 329.99907 * 12 11 10 37 37 H 1.08999 * 109.47262 * 299.99735 * 17 15 13 38 38 H 1.08992 * 109.47384 * 60.00135 * 17 15 13 39 39 H 1.09008 * 109.46914 * 179.97438 * 17 15 13 40 40 H 0.96997 * 119.99546 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6141 1.1671 -0.0006 6 6 4.3167 -0.0402 -0.0006 7 6 5.6946 -0.0335 -0.0016 8 6 6.3885 1.1659 -0.0033 9 6 5.7080 2.3667 -0.0033 10 6 4.3196 2.3795 0.0038 11 7 3.6309 3.5901 0.0097 12 6 3.2751 4.2242 1.2815 13 6 3.2918 4.1781 -1.1546 14 8 3.5859 3.6530 -2.2075 15 6 2.5471 5.4883 -1.1482 16 1 1.5964 5.3633 -0.6297 17 6 3.3848 6.5476 -0.4294 18 6 2.2909 5.9274 -2.5669 19 1 2.6327 5.3184 -3.3908 20 6 1.6192 7.1060 -2.8131 21 7 1.3952 7.4889 -4.0512 22 14 1.0260 8.1582 -1.3882 23 1 2.0857 9.1295 -1.0155 24 1 -0.1994 8.8933 -1.7921 25 1 0.7203 7.2883 -0.2242 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8401 0.0004 30 1 3.7805 -0.9777 0.0006 31 1 6.2365 -0.9677 -0.0012 32 1 7.4686 1.1610 -0.0045 33 1 6.2561 3.2973 -0.0041 34 1 4.0801 4.8897 1.5934 35 1 2.3569 4.7983 1.1570 36 1 3.1237 3.4567 2.0404 37 1 3.5697 6.2298 0.5967 38 1 4.3353 6.6726 -0.9479 39 1 2.8463 7.4954 -0.4252 40 1 0.9223 8.3179 -4.2244 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894127694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:27 Heat of formation + Delta-G solvation = -42.558043 kcal Electronic energy + Delta-G solvation = -23964.496872 eV Core-core repulsion = 20551.381023 eV Total energy + Delta-G solvation = -3413.115848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.89893 -40.40419 -39.12437 -36.60381 -35.93830 -35.49750 -33.43735 -32.39770 -30.96098 -28.09071 -27.66617 -27.00866 -25.28409 -24.44866 -22.92510 -21.62226 -20.49086 -19.11229 -18.89024 -17.84280 -17.48665 -17.27147 -16.70188 -16.37566 -16.19592 -16.03060 -15.49442 -15.39468 -14.92447 -14.66236 -14.47525 -14.37614 -14.08222 -13.71593 -13.51369 -13.33195 -13.15726 -13.05370 -12.94793 -12.81259 -12.47479 -12.33127 -12.15343 -11.48121 -11.25501 -11.08252 -10.79933 -10.52676 -10.26884 -9.94500 -9.76787 -9.69473 -8.30553 -6.37630 -0.20168 0.28478 1.27572 1.36315 1.47091 1.80875 1.87826 2.11953 2.22782 2.31477 2.81031 3.02415 3.73541 3.82098 3.97251 4.10529 4.16964 4.36694 4.38447 4.38975 4.44392 4.54063 4.56902 4.57261 4.59434 4.73739 4.82387 4.86492 4.92251 4.95725 5.22181 5.37699 5.39234 5.42122 5.45075 5.47628 5.69078 6.04327 6.20466 6.44396 6.51174 6.75456 7.22484 7.22828 7.44698 8.87500 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.005674 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.431742 B = 4933.544323 C = 5629.709867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.719 5.719 3 C 0.540 3.460 4 O -0.563 6.563 5 C -0.164 4.164 6 C -0.075 4.075 7 C -0.118 4.118 8 C -0.079 4.079 9 C -0.138 4.138 10 C 0.168 3.832 11 N -0.572 5.572 12 C 0.090 3.910 13 C 0.546 3.454 14 O -0.585 6.585 15 C 0.001 3.999 16 H 0.053 0.947 17 C -0.148 4.148 18 C -0.520 4.520 19 H 0.026 0.974 20 C 0.008 3.992 21 N -0.951 5.951 22 Si 0.959 3.041 23 H -0.251 1.251 24 H -0.294 1.294 25 H -0.241 1.241 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.120 0.880 29 H 0.417 0.583 30 H 0.164 0.836 31 H 0.175 0.825 32 H 0.165 0.835 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 -18.752 18.584 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.373 5.373 3 C 0.328 3.672 4 O -0.443 6.443 5 C -0.169 4.169 6 C -0.094 4.094 7 C -0.135 4.135 8 C -0.097 4.097 9 C -0.157 4.157 10 C 0.076 3.924 11 N -0.302 5.302 12 C -0.051 4.051 13 C 0.338 3.662 14 O -0.463 6.463 15 C -0.020 4.020 16 H 0.070 0.930 17 C -0.205 4.205 18 C -0.558 4.558 19 H 0.044 0.956 20 C -0.188 4.188 21 N -0.591 5.591 22 Si 0.783 3.217 23 H -0.176 1.176 24 H -0.222 1.222 25 H -0.165 1.165 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.139 0.861 29 H 0.255 0.745 30 H 0.181 0.819 31 H 0.192 0.808 32 H 0.182 0.818 33 H 0.147 0.853 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.936 -18.148 17.930 26.438 hybrid contribution -0.565 0.547 -0.480 0.921 sum 6.372 -17.601 17.450 25.591 Atomic orbital electron populations 1.21637 0.78514 1.04398 1.01012 1.45569 1.08334 1.08046 1.75303 1.18628 0.88006 0.84308 0.76260 1.90824 1.70694 1.32710 1.50024 1.20420 0.92732 0.95194 1.08535 1.21597 0.95550 0.95969 0.96303 1.21614 0.93387 0.99731 0.98785 1.21672 1.01964 0.90986 0.95083 1.21582 0.92096 1.00693 1.01355 1.17990 0.91524 0.84931 0.97909 1.45092 1.57144 1.20775 1.07198 1.22022 1.01456 0.98357 0.83267 1.21005 0.76738 0.86473 0.82008 1.90521 1.55972 1.66674 1.33172 1.19109 0.95671 0.90374 0.96854 0.92953 1.22261 0.99667 0.97824 1.00726 1.21055 1.36769 1.06697 0.91316 0.95612 1.26013 0.95122 0.98664 0.99043 1.70074 1.43064 1.24177 1.21813 0.85713 0.77563 0.78978 0.79437 1.17630 1.22167 1.16475 0.92794 0.94792 0.86145 0.74542 0.81850 0.80760 0.81779 0.85347 0.89732 0.91249 0.90507 0.88978 0.93243 0.93433 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.79 10.70 127.77 1.37 3.16 16 2 N -0.72 -16.20 5.66 -487.81 -2.76 -18.97 16 3 C 0.54 18.12 7.76 86.69 0.67 18.79 16 4 O -0.56 -24.63 13.72 -3.99 -0.05 -24.68 16 5 C -0.16 -4.94 5.89 -19.99 -0.12 -5.06 16 6 C -0.08 -1.40 9.53 22.52 0.21 -1.19 16 7 C -0.12 -1.75 10.02 22.24 0.22 -1.52 16 8 C -0.08 -1.44 10.03 22.30 0.22 -1.22 16 9 C -0.14 -3.79 9.96 22.37 0.22 -3.57 16 10 C 0.17 5.77 4.44 38.60 0.17 5.94 16 11 N -0.57 -22.75 1.52 -653.87 -0.99 -23.75 16 12 C 0.09 2.76 8.07 127.77 1.03 3.80 16 13 C 0.55 28.32 6.09 87.66 0.53 28.85 16 14 O -0.58 -35.90 15.43 -3.02 -0.05 -35.95 16 15 C 0.00 0.08 1.42 -12.29 -0.02 0.06 16 16 H 0.05 2.80 6.46 -2.38 -0.02 2.79 16 17 C -0.15 -6.36 8.31 71.98 0.60 -5.76 16 18 C -0.52 -34.20 8.96 25.60 0.23 -33.97 16 19 H 0.03 1.97 7.00 -2.91 -0.02 1.95 16 20 C 0.01 0.50 5.45 84.65 0.46 0.96 16 21 N -0.95 -64.27 13.96 21.45 0.30 -63.97 16 22 Si 0.96 46.64 24.38 68.60 1.67 48.31 16 23 H -0.25 -11.11 6.87 99.48 0.68 -10.43 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.24 -10.69 6.53 99.48 0.65 -10.05 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.42 5.64 6.86 -92.71 -0.64 5.00 16 30 H 0.16 1.62 6.40 -2.91 -0.02 1.60 16 31 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.08 2.06 6.95 -2.39 -0.02 2.04 16 35 H 0.07 2.32 6.01 -2.39 -0.01 2.31 16 36 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 37 H 0.09 3.05 4.53 -2.39 -0.01 3.03 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 2.04 3.28 -2.38 -0.01 2.03 16 40 H 0.27 16.67 8.31 -92.71 -0.77 15.90 16 Total: -1.00 -97.60 322.39 4.29 -93.31 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.36 Total: 16.43 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.81 Total: 9.27 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -3.46 Total: -106.68 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -0.10 Total: -60.63 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.67 Total: 48.31 kcal Total: -97.60 4.29 -93.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894127694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.750 kcal (2) G-P(sol) polarization free energy of solvation -97.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds