Wall clock time and date at job start Tue Mar 31 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 120.00073 * 2 1 4 4 O 1.21589 * 119.99749 * 0.02562 * 3 2 1 5 5 C 1.47520 * 119.99797 * 180.02562 * 3 2 1 6 6 C 1.39682 * 120.20166 * 0.25001 * 5 3 2 7 7 C 1.37800 * 119.92283 * 180.28121 * 6 5 3 8 8 C 1.38556 * 120.32879 * 359.71992 * 7 6 5 9 9 C 1.38022 * 120.40520 * 0.02562 * 8 7 6 10 10 C 1.38849 * 120.07216 * 0.02562 * 9 8 7 11 11 N 1.39291 * 120.16619 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00051 * 269.99760 * 11 10 9 13 13 C 1.34770 * 119.99691 * 90.00009 * 11 10 9 14 14 O 1.21281 * 120.00244 * 0.02562 * 13 11 10 15 15 C 1.50698 * 120.00019 * 179.97438 * 13 11 10 16 16 H 1.09001 * 109.47122 * 60.00417 * 15 13 11 17 17 C 1.53006 * 109.47184 * 300.00531 * 15 13 11 18 18 C 1.50697 * 109.47576 * 180.02562 * 15 13 11 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00428 * 180.02562 * 18 15 13 21 21 N 1.31510 * 119.99600 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 120.00227 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46821 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46996 * 120.00312 * 22 20 18 25 25 H 1.48495 * 109.46665 * 239.99993 * 22 20 18 26 26 H 1.09001 * 109.46628 * 299.99950 * 1 2 3 27 27 H 1.09000 * 109.47287 * 59.99175 * 1 2 3 28 28 H 1.08994 * 109.46969 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00286 * 180.02562 * 2 1 3 30 30 H 1.08006 * 120.03921 * 359.97438 * 6 5 3 31 31 H 1.07998 * 119.83548 * 179.75046 * 7 6 5 32 32 H 1.08005 * 119.80165 * 180.02562 * 8 7 6 33 33 H 1.08006 * 119.96510 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47590 * 270.00250 * 12 11 10 35 35 H 1.09004 * 109.46902 * 30.00216 * 12 11 10 36 36 H 1.08995 * 109.46944 * 149.99688 * 12 11 10 37 37 H 1.09001 * 109.47002 * 299.99404 * 17 15 13 38 38 H 1.08993 * 109.46955 * 59.99842 * 17 15 13 39 39 H 1.09000 * 109.47050 * 179.97438 * 17 15 13 40 40 H 0.97006 * 120.00212 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 6 3.6141 1.1672 -0.0006 6 6 4.3167 -0.0401 -0.0064 7 6 5.6947 -0.0335 -0.0010 8 6 6.3886 1.1658 0.0043 9 6 5.7081 2.3666 0.0048 10 6 4.3197 2.3795 0.0005 11 7 3.6309 3.5902 0.0015 12 6 3.2647 4.2235 1.2707 13 6 3.3014 4.1789 -1.1652 14 8 3.6041 3.6543 -2.2159 15 6 2.5557 5.4885 -1.1641 16 1 3.1476 6.2432 -0.6464 17 6 1.2154 5.3116 -0.4477 18 6 2.3113 5.9286 -2.5845 19 1 2.6606 5.3205 -3.4059 20 6 1.6417 7.1074 -2.8355 21 7 1.2169 7.8481 -1.8353 22 14 1.3381 7.6526 -4.5963 23 1 1.9108 6.6503 -5.5304 24 1 -0.1231 7.7709 -4.8328 25 1 1.9848 8.9696 -4.8250 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 3.7806 -0.9777 -0.0101 31 1 6.2365 -0.9677 -0.0014 32 1 7.4686 1.1611 0.0080 33 1 6.2562 3.2973 0.0093 34 1 2.2807 3.8725 1.5815 35 1 4.0003 3.9636 2.0320 36 1 3.2409 5.3057 1.1432 37 1 0.6234 4.5570 -0.9655 38 1 1.3918 4.9932 0.5797 39 1 0.6762 6.2590 -0.4465 40 1 0.7461 8.6777 -2.0118 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894127702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:31 Heat of formation + Delta-G solvation = -21.030217 kcal Electronic energy + Delta-G solvation = -24010.409159 eV Core-core repulsion = 20598.226827 eV Total energy + Delta-G solvation = -3412.182332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50151 -38.74821 -37.84517 -34.97904 -34.23123 -33.65560 -31.36088 -30.90914 -29.27660 -26.89662 -26.12695 -24.89334 -23.53721 -23.21327 -21.29943 -20.43793 -18.95276 -17.88624 -16.51422 -16.12364 -15.87619 -15.56727 -15.09528 -14.97849 -14.92899 -14.53162 -14.15387 -13.64175 -13.27303 -13.06172 -13.00000 -12.66795 -12.30695 -12.27224 -12.04065 -11.98805 -11.75694 -11.40113 -11.04164 -10.88754 -10.55960 -10.23430 -10.03825 -9.85743 -9.68329 -9.08051 -8.93824 -8.82761 -8.74279 -8.44267 -8.17820 -8.04876 -5.90973 -3.93000 0.90194 1.31861 3.05387 3.27248 3.39047 3.45765 3.54130 3.68244 3.88255 3.91482 4.56338 4.72111 4.78330 4.95461 5.15899 5.34572 5.38853 5.42007 5.47040 5.54105 5.70125 5.81490 5.86929 6.03448 6.14117 6.19761 6.29926 6.37546 6.46380 6.52566 6.69649 6.94293 7.16970 7.21851 7.46775 7.56166 7.70993 7.94431 8.08187 8.25070 8.44455 8.51981 9.14723 9.36952 9.71066 11.16561 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.005422 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.087981 B = 5163.267303 C = 5795.093075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.740 5.740 3 C 0.549 3.451 4 O -0.495 6.495 5 C -0.138 4.138 6 C -0.085 4.085 7 C -0.135 4.135 8 C -0.089 4.089 9 C -0.123 4.123 10 C 0.220 3.780 11 N -0.586 5.586 12 C 0.094 3.906 13 C 0.539 3.461 14 O -0.543 6.543 15 C 0.037 3.963 16 H 0.049 0.951 17 C -0.131 4.131 18 C -0.496 4.496 19 H 0.072 0.928 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.396 0.604 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.084 0.916 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -17.013 9.860 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.394 5.394 3 C 0.336 3.664 4 O -0.369 6.369 5 C -0.143 4.143 6 C -0.105 4.105 7 C -0.153 4.153 8 C -0.107 4.107 9 C -0.143 4.143 10 C 0.127 3.873 11 N -0.319 5.319 12 C -0.048 4.048 13 C 0.333 3.667 14 O -0.418 6.418 15 C 0.016 3.984 16 H 0.066 0.934 17 C -0.189 4.189 18 C -0.534 4.534 19 H 0.090 0.910 20 C -0.142 4.142 21 N -0.536 5.536 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.230 0.770 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.962 -16.284 9.294 19.395 hybrid contribution -0.015 -0.233 -0.876 0.906 sum 4.947 -16.517 8.418 19.187 Atomic orbital electron populations 1.21481 0.79422 1.01691 1.02623 1.45692 1.07650 1.08392 1.77621 1.18188 0.87109 0.83997 0.77107 1.90901 1.69375 1.30258 1.46339 1.20339 0.93338 0.94027 1.06568 1.21134 0.94602 0.96258 0.98466 1.21015 0.93855 0.98252 1.02133 1.21192 1.00069 0.91962 0.97520 1.21480 0.93281 0.98969 1.00569 1.17622 0.90216 0.85762 0.93655 1.45489 1.58454 1.19806 1.08173 1.21872 1.00009 0.99034 0.83869 1.22029 0.76347 0.87507 0.80848 1.90520 1.53981 1.66021 1.31236 1.18818 0.93350 0.87330 0.98936 0.93374 1.21831 0.98295 1.02417 0.96335 1.21198 1.35384 1.05602 0.91236 0.91011 1.24925 0.95654 0.96400 0.97270 1.69902 1.39555 1.13985 1.30178 0.86438 0.77710 0.78305 0.85034 1.19671 1.21111 1.21101 0.92238 0.92069 0.91047 0.77037 0.85833 0.85525 0.85427 0.85135 0.91809 0.93054 0.89825 0.94865 0.95524 0.89738 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.70 59.85 0.64 1.65 16 2 N -0.74 -9.11 5.66 -68.15 -0.39 -9.50 16 3 C 0.55 9.37 7.76 -12.47 -0.10 9.28 16 4 O -0.50 -10.46 12.56 5.29 0.07 -10.40 16 5 C -0.14 -2.21 5.89 -104.81 -0.62 -2.83 16 6 C -0.09 -0.99 9.53 -39.20 -0.37 -1.37 16 7 C -0.13 -1.40 10.02 -39.62 -0.40 -1.80 16 8 C -0.09 -1.02 10.03 -39.54 -0.40 -1.42 16 9 C -0.12 -1.85 9.96 -39.43 -0.39 -2.24 16 10 C 0.22 3.94 4.44 -83.48 -0.37 3.57 16 11 N -0.59 -11.98 1.52 -120.61 -0.18 -12.16 16 12 C 0.09 1.62 8.44 59.85 0.50 2.13 16 13 C 0.54 13.70 6.13 -10.99 -0.07 13.64 16 14 O -0.54 -15.55 15.43 5.56 0.09 -15.47 16 15 C 0.04 0.99 1.83 -92.92 -0.17 0.82 16 16 H 0.05 1.32 7.40 -51.93 -0.38 0.94 16 17 C -0.13 -3.35 8.20 37.16 0.30 -3.05 16 18 C -0.50 -14.97 8.37 -34.44 -0.29 -15.26 16 19 H 0.07 2.30 6.75 -52.49 -0.35 1.95 16 20 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 21 N -0.90 -26.27 11.32 55.43 0.63 -25.64 16 22 Si 0.90 22.80 29.54 -169.99 -5.02 17.78 16 23 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.40 3.46 6.86 -40.82 -0.28 3.18 16 30 H 0.12 0.99 6.40 -52.48 -0.34 0.65 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.06 1.14 5.96 -51.93 -0.31 0.83 16 35 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.08 1.48 6.01 -51.93 -0.31 1.17 16 37 H 0.03 0.89 8.01 -51.93 -0.42 0.48 16 38 H 0.03 0.59 4.53 -51.93 -0.24 0.35 16 39 H 0.08 2.32 6.07 -51.93 -0.32 2.00 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -37.02 326.93 -6.73 -43.75 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.03 Total: 2.02 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -1.82 Total: 4.70 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.06 Total: -47.30 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.15 Total: -25.87 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.02 -6.73 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894127702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.717 kcal (2) G-P(sol) polarization free energy of solvation -37.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds