Wall clock time and date at job start Tue Mar 31 2020 06:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 120.00073 * 2 1 4 4 O 1.21589 * 119.99749 * 0.02562 * 3 2 1 5 5 C 1.47520 * 119.99797 * 180.02562 * 3 2 1 6 6 C 1.39682 * 120.20166 * 0.25001 * 5 3 2 7 7 C 1.37800 * 119.92283 * 180.28121 * 6 5 3 8 8 C 1.38556 * 120.32879 * 359.71992 * 7 6 5 9 9 C 1.38022 * 120.40520 * 0.02562 * 8 7 6 10 10 C 1.38849 * 120.07216 * 0.02562 * 9 8 7 11 11 N 1.39291 * 120.16619 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00051 * 269.99760 * 11 10 9 13 13 C 1.34770 * 119.99691 * 90.00009 * 11 10 9 14 14 O 1.21281 * 120.00244 * 0.02562 * 13 11 10 15 15 C 1.50698 * 120.00019 * 179.97438 * 13 11 10 16 16 H 1.09001 * 109.47122 * 60.00417 * 15 13 11 17 17 C 1.53006 * 109.47184 * 300.00531 * 15 13 11 18 18 C 1.50697 * 109.47576 * 180.02562 * 15 13 11 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00428 * 180.02562 * 18 15 13 21 21 N 1.31510 * 119.99600 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 120.00227 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.46821 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46996 * 120.00312 * 22 20 18 25 25 H 1.48495 * 109.46665 * 239.99993 * 22 20 18 26 26 H 1.09001 * 109.46628 * 299.99950 * 1 2 3 27 27 H 1.09000 * 109.47287 * 59.99175 * 1 2 3 28 28 H 1.08994 * 109.46969 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00286 * 180.02562 * 2 1 3 30 30 H 1.08006 * 120.03921 * 359.97438 * 6 5 3 31 31 H 1.07998 * 119.83548 * 179.75046 * 7 6 5 32 32 H 1.08005 * 119.80165 * 180.02562 * 8 7 6 33 33 H 1.08006 * 119.96510 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47590 * 270.00250 * 12 11 10 35 35 H 1.09004 * 109.46902 * 30.00216 * 12 11 10 36 36 H 1.08995 * 109.46944 * 149.99688 * 12 11 10 37 37 H 1.09001 * 109.47002 * 299.99404 * 17 15 13 38 38 H 1.08993 * 109.46955 * 59.99842 * 17 15 13 39 39 H 1.09000 * 109.47050 * 179.97438 * 17 15 13 40 40 H 0.97006 * 120.00212 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 6 3.6141 1.1672 -0.0006 6 6 4.3167 -0.0401 -0.0064 7 6 5.6947 -0.0335 -0.0010 8 6 6.3886 1.1658 0.0043 9 6 5.7081 2.3666 0.0048 10 6 4.3197 2.3795 0.0005 11 7 3.6309 3.5902 0.0015 12 6 3.2647 4.2235 1.2707 13 6 3.3014 4.1789 -1.1652 14 8 3.6041 3.6543 -2.2159 15 6 2.5557 5.4885 -1.1641 16 1 3.1476 6.2432 -0.6464 17 6 1.2154 5.3116 -0.4477 18 6 2.3113 5.9286 -2.5845 19 1 2.6606 5.3205 -3.4059 20 6 1.6417 7.1074 -2.8355 21 7 1.2169 7.8481 -1.8353 22 14 1.3381 7.6526 -4.5963 23 1 1.9108 6.6503 -5.5304 24 1 -0.1231 7.7709 -4.8328 25 1 1.9848 8.9696 -4.8250 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 3.7806 -0.9777 -0.0101 31 1 6.2365 -0.9677 -0.0014 32 1 7.4686 1.1611 0.0080 33 1 6.2562 3.2973 0.0093 34 1 2.2807 3.8725 1.5815 35 1 4.0003 3.9636 2.0320 36 1 3.2409 5.3057 1.1432 37 1 0.6234 4.5570 -0.9655 38 1 1.3918 4.9932 0.5797 39 1 0.6762 6.2590 -0.4465 40 1 0.7461 8.6777 -2.0118 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894127702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:30 Heat of formation + Delta-G solvation = -47.116823 kcal Electronic energy + Delta-G solvation = -24011.540359 eV Core-core repulsion = 20598.226827 eV Total energy + Delta-G solvation = -3413.313532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.83896 -40.29554 -39.08419 -36.54254 -35.86201 -35.45468 -32.79787 -32.37438 -30.73372 -28.02281 -27.62430 -27.08858 -25.00122 -24.42905 -22.88080 -21.62132 -20.49992 -19.06097 -18.43444 -17.69138 -17.48944 -17.20452 -16.51311 -16.34115 -16.16723 -15.99038 -15.48967 -15.16657 -14.86920 -14.48363 -14.35501 -14.11308 -14.03334 -13.55013 -13.28817 -13.13525 -13.02919 -12.95395 -12.90339 -12.66234 -12.41908 -12.21920 -12.15326 -12.04847 -11.05550 -10.96624 -10.64100 -10.33367 -10.21896 -9.92996 -9.74100 -9.64740 -8.16179 -6.27065 -0.17218 0.29656 1.36000 1.36862 1.51530 1.87910 1.92536 2.18331 2.26822 2.44708 2.83349 3.11901 3.77027 3.84058 4.11499 4.16035 4.28013 4.39746 4.40395 4.46330 4.56263 4.59298 4.62763 4.73504 4.86162 4.88508 4.94563 5.02896 5.13419 5.23551 5.42275 5.42915 5.44565 5.49112 5.69213 5.74857 5.87130 6.10133 6.20130 6.51259 6.56005 6.79842 7.29248 7.37753 7.51298 8.90228 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.005422 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.087981 B = 5163.267303 C = 5795.093075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.720 5.720 3 C 0.537 3.463 4 O -0.552 6.552 5 C -0.163 4.163 6 C -0.075 4.075 7 C -0.118 4.118 8 C -0.078 4.078 9 C -0.141 4.141 10 C 0.168 3.832 11 N -0.572 5.572 12 C 0.092 3.908 13 C 0.539 3.461 14 O -0.589 6.589 15 C 0.034 3.966 16 H 0.039 0.961 17 C -0.106 4.106 18 C -0.529 4.529 19 H 0.043 0.957 20 C 0.019 3.981 21 N -0.910 5.910 22 Si 0.959 3.041 23 H -0.281 1.281 24 H -0.273 1.273 25 H -0.268 1.268 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.119 0.881 29 H 0.416 0.584 30 H 0.164 0.836 31 H 0.175 0.825 32 H 0.164 0.836 33 H 0.125 0.875 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.006 0.994 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.778 -19.830 10.605 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.374 5.374 3 C 0.324 3.676 4 O -0.431 6.431 5 C -0.167 4.167 6 C -0.094 4.094 7 C -0.136 4.136 8 C -0.097 4.097 9 C -0.161 4.161 10 C 0.077 3.923 11 N -0.302 5.302 12 C -0.049 4.049 13 C 0.332 3.668 14 O -0.468 6.468 15 C 0.013 3.987 16 H 0.056 0.944 17 C -0.164 4.164 18 C -0.567 4.567 19 H 0.061 0.939 20 C -0.180 4.180 21 N -0.550 5.550 22 Si 0.784 3.216 23 H -0.207 1.207 24 H -0.198 1.198 25 H -0.193 1.193 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.138 0.862 29 H 0.253 0.747 30 H 0.182 0.818 31 H 0.193 0.807 32 H 0.182 0.818 33 H 0.143 0.857 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.340 -19.161 10.109 22.573 hybrid contribution -0.374 0.494 -1.016 1.191 sum 5.966 -18.666 9.093 21.603 Atomic orbital electron populations 1.21608 0.78592 1.04245 1.00935 1.45561 1.08238 1.08015 1.75600 1.18637 0.87969 0.84427 0.76546 1.90864 1.70503 1.32371 1.49319 1.20443 0.92918 0.95071 1.08305 1.21601 0.95531 0.95973 0.96312 1.21605 0.93399 0.99663 0.98897 1.21650 1.01906 0.90938 0.95183 1.21572 0.92159 1.00612 1.01708 1.18024 0.91492 0.85079 0.97698 1.45123 1.57143 1.20688 1.07248 1.21951 1.00959 0.98254 0.83720 1.21541 0.76284 0.87164 0.81851 1.90461 1.56148 1.67097 1.33113 1.18705 0.93987 0.88532 0.97491 0.94375 1.21558 0.97033 1.00296 0.97516 1.21279 1.37007 1.06399 0.92061 0.93899 1.25640 0.94919 0.96042 1.01440 1.69975 1.39083 1.14133 1.31784 0.85500 0.78143 0.78064 0.79907 1.20660 1.19793 1.19269 0.93021 0.94771 0.86248 0.74661 0.81837 0.80721 0.81808 0.85699 0.92459 0.89200 0.90826 0.97455 0.92717 0.91649 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.89 10.70 127.77 1.37 3.26 16 2 N -0.72 -16.70 5.66 -487.79 -2.76 -19.46 16 3 C 0.54 18.43 7.76 86.69 0.67 19.10 16 4 O -0.55 -24.50 12.56 -4.00 -0.05 -24.55 16 5 C -0.16 -5.07 5.89 -19.99 -0.12 -5.19 16 6 C -0.08 -1.47 9.53 22.52 0.21 -1.25 16 7 C -0.12 -1.84 10.02 22.24 0.22 -1.62 16 8 C -0.08 -1.51 10.03 22.29 0.22 -1.29 16 9 C -0.14 -4.10 9.96 22.36 0.22 -3.88 16 10 C 0.17 6.08 4.44 38.60 0.17 6.25 16 11 N -0.57 -24.36 1.52 -653.89 -0.99 -25.35 16 12 C 0.09 3.28 8.44 127.77 1.08 4.36 16 13 C 0.54 29.02 6.13 87.66 0.54 29.56 16 14 O -0.59 -35.85 15.43 -3.03 -0.05 -35.90 16 15 C 0.03 1.94 1.83 -12.29 -0.02 1.92 16 16 H 0.04 2.22 7.40 -2.39 -0.02 2.21 16 17 C -0.11 -5.75 8.20 71.98 0.59 -5.16 16 18 C -0.53 -33.70 8.37 25.60 0.21 -33.49 16 19 H 0.04 2.93 6.75 -2.91 -0.02 2.91 16 20 C 0.02 1.11 5.30 84.66 0.45 1.56 16 21 N -0.91 -54.50 11.32 21.45 0.24 -54.25 16 22 Si 0.96 47.82 29.54 68.60 2.03 49.85 16 23 H -0.28 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.42 5.89 6.86 -92.71 -0.64 5.26 16 30 H 0.16 1.74 6.40 -2.91 -0.02 1.72 16 31 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 32 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.06 2.12 5.96 -2.39 -0.01 2.11 16 35 H 0.09 2.47 8.05 -2.38 -0.02 2.45 16 36 H 0.07 2.73 6.01 -2.39 -0.01 2.71 16 37 H 0.01 0.37 8.01 -2.39 -0.02 0.35 16 38 H 0.05 2.58 4.53 -2.39 -0.01 2.57 16 39 H 0.06 3.75 6.07 -2.39 -0.01 3.74 16 40 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -87.92 326.93 4.68 -83.24 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.44 Total: 12.30 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.83 Total: 14.12 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -3.51 Total: -99.06 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -0.10 Total: -60.45 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -87.92 4.68 -83.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894127702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.124 kcal (2) G-P(sol) polarization free energy of solvation -87.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds