Wall clock time and date at job start Tue Mar 31 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 5 5 C 1.34777 * 119.99525 * 84.99977 * 4 2 1 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 2 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 5 10 10 O 1.21293 * 119.99814 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00075 * 180.02562 * 9 8 7 12 12 C 1.37090 * 120.00318 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00052 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00175 * 179.97438 * 12 11 9 15 15 N 1.31404 * 119.99928 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99705 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47292 * 90.00321 * 16 14 12 18 18 H 1.48504 * 109.46709 * 209.99863 * 16 14 12 19 19 H 1.48496 * 109.47395 * 329.99874 * 16 14 12 20 20 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 21 21 C 1.38233 * 120.00008 * 79.73204 * 20 2 1 22 22 C 1.38235 * 119.99952 * 179.80759 * 21 20 2 23 23 C 1.38231 * 119.99942 * 0.39519 * 22 21 20 24 24 C 1.38236 * 120.00175 * 359.85638 * 23 22 21 25 25 C 1.38235 * 119.99885 * 359.95495 * 24 23 22 26 26 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 27 27 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 0.97000 * 120.00580 * 265.00723 * 4 2 1 30 30 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 31 31 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 32 32 H 1.09000 * 109.46887 * 300.00372 * 8 7 5 33 33 H 1.08998 * 109.46846 * 59.99549 * 8 7 5 34 34 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 35 35 H 0.96999 * 119.99865 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.00035 * 359.97438 * 21 20 2 37 37 H 1.08005 * 120.00087 * 180.22773 * 22 21 20 38 38 H 1.08002 * 119.99640 * 179.83642 * 23 22 21 39 39 H 1.07992 * 119.99869 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00172 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6908 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8591 1.1584 -2.4116 7 6 2.6554 -0.7275 -3.5859 8 6 2.7122 0.2568 -4.7558 9 6 3.2198 -0.4523 -5.9848 10 8 3.5083 -1.6292 -5.9302 11 7 3.3543 0.2213 -7.1444 12 6 3.8166 -0.4236 -8.2623 13 1 4.0727 -1.4717 -8.2139 14 6 3.9547 0.2708 -9.4579 15 7 3.6426 1.5459 -9.5169 16 14 4.5839 -0.6083 -10.9812 17 1 3.4372 -1.1788 -11.7328 18 1 5.3107 0.3567 -11.8448 19 1 5.5041 -1.7016 -10.5773 20 6 2.0323 -0.7103 1.2306 21 6 2.0614 -2.0918 1.2677 22 6 2.5258 -2.7433 2.3950 23 6 2.9534 -2.0134 3.4882 24 6 2.9194 -0.6319 3.4531 25 6 2.4587 0.0197 2.3243 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8898 29 1 2.2491 -1.6319 -1.1524 30 1 3.6539 -1.1197 -3.3923 31 1 1.9842 -1.5494 -3.8349 32 1 1.7138 0.6491 -4.9494 33 1 3.3834 1.0788 -4.5068 34 1 3.1239 1.1626 -7.1879 35 1 3.7393 2.0307 -10.3514 36 1 1.7239 -2.6622 0.4150 37 1 2.5520 -3.8227 2.4226 38 1 3.3137 -2.5224 4.3700 39 1 3.2531 -0.0617 4.3074 40 1 2.4325 1.0990 2.2967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896996986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:51 Heat of formation + Delta-G solvation = -65.870224 kcal Electronic energy + Delta-G solvation = -21691.187669 eV Core-core repulsion = 18277.060929 eV Total energy + Delta-G solvation = -3414.126740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29979 -39.17577 -38.04572 -35.66860 -34.02080 -32.48557 -31.60791 -31.20227 -31.04041 -29.37761 -26.09021 -24.41467 -23.51709 -22.94592 -21.03145 -20.16166 -18.99190 -17.80402 -17.71580 -16.81485 -16.18077 -15.61956 -15.55218 -15.22971 -14.77181 -14.45679 -14.22981 -13.91311 -13.80514 -13.69649 -13.45656 -13.30495 -12.71422 -12.42724 -12.30079 -12.13316 -11.82184 -11.55269 -11.41210 -11.33281 -11.09551 -11.07539 -10.64333 -10.38168 -10.19904 -9.71741 -9.49997 -9.27433 -9.23428 -9.01162 -8.38345 -7.95327 -6.39450 -3.80604 0.97958 1.06183 2.77386 3.11990 3.19097 3.27647 3.33576 3.48936 3.94254 4.19662 4.28031 4.53771 4.66217 4.78719 4.82624 5.03513 5.06744 5.15353 5.18755 5.24366 5.27502 5.43736 5.56102 5.58929 5.63735 5.65585 5.76632 5.97961 6.00605 6.11742 6.18020 6.18083 6.39516 6.41312 6.45777 6.52520 6.64472 7.47203 7.56884 8.07306 8.29848 8.62282 9.18771 9.57146 10.07639 10.78130 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037288 B = 0.002425 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.731189 B =11545.368110 C =11929.502010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.181 3.819 3 H 0.096 0.904 4 N -0.732 5.732 5 C 0.516 3.484 6 O -0.540 6.540 7 C -0.117 4.117 8 C -0.114 4.114 9 C 0.439 3.561 10 O -0.602 6.602 11 N -0.560 5.560 12 C -0.302 4.302 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.899 5.899 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.089 4.089 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.109 4.109 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.400 0.600 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.394 0.606 35 H 0.272 0.728 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 -4.072 24.748 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.114 0.886 4 N -0.385 5.385 5 C 0.304 3.696 6 O -0.416 6.416 7 C -0.157 4.157 8 C -0.155 4.155 9 C 0.225 3.775 10 O -0.489 6.489 11 N -0.195 5.195 12 C -0.432 4.432 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.540 5.540 16 Si 0.758 3.242 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.089 4.089 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.127 4.127 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.235 0.765 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.228 0.772 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.332 -3.844 24.546 25.220 hybrid contribution 0.273 -0.270 -0.743 0.836 sum -4.059 -4.114 23.803 24.495 Atomic orbital electron populations 1.22164 0.94203 1.02430 1.02801 1.19758 0.94212 0.96814 0.81545 0.88612 1.46218 1.68658 1.14208 1.09433 1.21077 0.76602 0.87346 0.84580 1.90684 1.49772 1.16133 1.85056 1.21317 1.03782 0.99425 0.91201 1.21191 1.03136 0.98268 0.92924 1.19929 0.84903 0.87847 0.84778 1.90497 1.56501 1.16488 1.85427 1.41903 1.56967 1.12475 1.08199 1.19720 1.39990 0.96671 0.86777 0.87908 1.25290 0.97626 0.95656 0.99421 1.69619 1.48332 1.07996 1.28090 0.85854 0.78871 0.78830 0.80688 1.20399 1.20916 1.19423 1.19987 0.99394 0.93995 0.95544 1.20968 0.99981 0.93791 0.98477 1.21157 0.98777 1.00040 0.93437 1.21192 0.99970 0.94257 0.98593 1.21155 0.99608 0.94677 0.98091 1.21037 0.98580 1.00047 0.93052 0.91367 0.92293 0.91642 0.76453 0.88321 0.88319 0.89821 0.89824 0.77221 0.91823 0.85961 0.85862 0.86070 0.85911 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.46 37.16 0.35 -1.14 16 2 C 0.18 1.84 2.78 -69.08 -0.19 1.65 16 3 H 0.10 1.11 7.44 -51.93 -0.39 0.72 16 4 N -0.73 -8.05 5.03 -54.93 -0.28 -8.33 16 5 C 0.52 7.46 7.79 -10.98 -0.09 7.37 16 6 O -0.54 -9.52 15.64 5.55 0.09 -9.43 16 7 C -0.12 -1.81 4.99 -27.88 -0.14 -1.95 16 8 C -0.11 -2.13 4.99 -27.88 -0.14 -2.27 16 9 C 0.44 10.51 7.78 -10.98 -0.09 10.42 16 10 O -0.60 -16.08 15.56 5.55 0.09 -15.99 16 11 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 12 C -0.30 -8.54 9.68 -14.94 -0.14 -8.69 16 13 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 16 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C -0.09 -0.79 4.95 -104.62 -0.52 -1.31 16 21 C -0.11 -0.92 9.05 -39.58 -0.36 -1.28 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.11 -0.91 9.67 -39.58 -0.38 -1.29 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.40 3.55 6.89 -40.82 -0.28 3.27 16 30 H 0.10 1.50 8.10 -51.92 -0.42 1.08 16 31 H 0.10 1.48 8.10 -51.93 -0.42 1.05 16 32 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 33 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 34 H 0.39 9.97 7.90 -40.82 -0.32 9.64 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.12 0.83 6.93 -52.49 -0.36 0.46 16 37 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.89 8.04 -52.49 -0.42 0.46 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -33.23 345.88 -7.74 -40.96 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.51 Total: 12.06 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.98 Total: -1.78 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.39 Total: -47.23 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.17 Total: -25.43 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.23 -7.74 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896996986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.907 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds