Wall clock time and date at job start Tue Mar 31 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 5 5 C 1.34777 * 119.99525 * 84.99977 * 4 2 1 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 2 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 5 10 10 O 1.21293 * 119.99814 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00075 * 180.02562 * 9 8 7 12 12 C 1.37090 * 120.00318 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00052 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00175 * 179.97438 * 12 11 9 15 15 N 1.31404 * 119.99928 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99705 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47292 * 90.00321 * 16 14 12 18 18 H 1.48504 * 109.46709 * 209.99863 * 16 14 12 19 19 H 1.48496 * 109.47395 * 329.99874 * 16 14 12 20 20 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 21 21 C 1.38233 * 120.00008 * 79.73204 * 20 2 1 22 22 C 1.38235 * 119.99952 * 179.80759 * 21 20 2 23 23 C 1.38231 * 119.99942 * 0.39519 * 22 21 20 24 24 C 1.38236 * 120.00175 * 359.85638 * 23 22 21 25 25 C 1.38235 * 119.99885 * 359.95495 * 24 23 22 26 26 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 27 27 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 0.97000 * 120.00580 * 265.00723 * 4 2 1 30 30 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 31 31 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 32 32 H 1.09000 * 109.46887 * 300.00372 * 8 7 5 33 33 H 1.08998 * 109.46846 * 59.99549 * 8 7 5 34 34 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 35 35 H 0.96999 * 119.99865 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.00035 * 359.97438 * 21 20 2 37 37 H 1.08005 * 120.00087 * 180.22773 * 22 21 20 38 38 H 1.08002 * 119.99640 * 179.83642 * 23 22 21 39 39 H 1.07992 * 119.99869 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00172 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6908 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8591 1.1584 -2.4116 7 6 2.6554 -0.7275 -3.5859 8 6 2.7122 0.2568 -4.7558 9 6 3.2198 -0.4523 -5.9848 10 8 3.5083 -1.6292 -5.9302 11 7 3.3543 0.2213 -7.1444 12 6 3.8166 -0.4236 -8.2623 13 1 4.0727 -1.4717 -8.2139 14 6 3.9547 0.2708 -9.4579 15 7 3.6426 1.5459 -9.5169 16 14 4.5839 -0.6083 -10.9812 17 1 3.4372 -1.1788 -11.7328 18 1 5.3107 0.3567 -11.8448 19 1 5.5041 -1.7016 -10.5773 20 6 2.0323 -0.7103 1.2306 21 6 2.0614 -2.0918 1.2677 22 6 2.5258 -2.7433 2.3950 23 6 2.9534 -2.0134 3.4882 24 6 2.9194 -0.6319 3.4531 25 6 2.4587 0.0197 2.3243 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8898 29 1 2.2491 -1.6319 -1.1524 30 1 3.6539 -1.1197 -3.3923 31 1 1.9842 -1.5494 -3.8349 32 1 1.7138 0.6491 -4.9494 33 1 3.3834 1.0788 -4.5068 34 1 3.1239 1.1626 -7.1879 35 1 3.7393 2.0307 -10.3514 36 1 1.7239 -2.6622 0.4150 37 1 2.5520 -3.8227 2.4226 38 1 3.3137 -2.5224 4.3700 39 1 3.2531 -0.0617 4.3074 40 1 2.4325 1.0990 2.2967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896996986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:51 Heat of formation + Delta-G solvation = -87.469453 kcal Electronic energy + Delta-G solvation = -21692.124282 eV Core-core repulsion = 18277.060929 eV Total energy + Delta-G solvation = -3415.063353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25944 -40.25565 -39.72254 -36.59019 -36.04899 -33.86658 -33.25094 -32.47295 -31.75050 -30.11054 -27.79522 -25.86098 -24.52606 -23.60971 -21.89808 -21.21311 -20.81202 -19.84297 -18.73031 -17.85542 -17.30641 -16.93564 -16.76969 -16.43689 -15.98831 -15.80699 -15.64166 -15.39928 -14.85067 -14.61441 -14.24907 -14.18463 -14.12432 -13.74513 -13.49204 -13.28225 -13.10389 -12.91382 -12.85758 -12.56215 -12.41368 -12.10899 -12.09549 -11.96271 -11.75709 -11.51713 -10.92828 -10.38471 -10.20690 -10.03581 -9.82517 -9.66803 -8.47049 -5.96855 0.38126 0.49438 1.38426 1.42022 1.55538 1.61094 2.02594 2.10571 2.32032 2.88326 3.20220 3.25946 3.57028 3.76917 3.95177 4.12582 4.13862 4.19854 4.29075 4.31936 4.32405 4.45782 4.61326 4.64588 4.74146 4.76312 4.92774 4.94897 5.04076 5.05371 5.14463 5.22091 5.39331 5.40675 5.56168 5.63217 5.69145 5.98002 6.09290 6.48768 6.56300 7.09639 7.20821 7.53770 8.06903 8.70529 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037288 B = 0.002425 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.731189 B =11545.368110 C =11929.502010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.183 3.817 3 H 0.079 0.921 4 N -0.715 5.715 5 C 0.523 3.477 6 O -0.575 6.575 7 C -0.111 4.111 8 C -0.103 4.103 9 C 0.440 3.560 10 O -0.630 6.630 11 N -0.573 5.573 12 C -0.336 4.336 13 H 0.084 0.916 14 C -0.016 4.016 15 N -0.922 5.922 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.122 4.122 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.412 0.588 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.396 0.604 35 H 0.278 0.722 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -4.989 25.847 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.079 3.921 3 H 0.097 0.903 4 N -0.368 5.368 5 C 0.310 3.690 6 O -0.454 6.454 7 C -0.151 4.151 8 C -0.144 4.144 9 C 0.228 3.772 10 O -0.518 6.518 11 N -0.209 5.209 12 C -0.465 4.465 13 H 0.102 0.898 14 C -0.216 4.216 15 N -0.562 5.562 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.101 4.101 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.140 4.140 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.250 0.750 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.238 -4.778 25.686 26.468 hybrid contribution 0.239 -0.010 -0.969 0.998 sum -4.000 -4.788 24.717 25.492 Atomic orbital electron populations 1.22110 0.93576 1.02947 1.02429 1.19763 0.94668 0.96074 0.81605 0.90265 1.46080 1.67262 1.14704 1.08753 1.20778 0.76377 0.86741 0.85069 1.90677 1.51626 1.17509 1.85620 1.21228 1.04450 0.98789 0.90615 1.21099 1.03216 0.98603 0.91439 1.20793 0.83302 0.87587 0.85510 1.90468 1.57379 1.17938 1.86064 1.42016 1.57675 1.12602 1.08597 1.19743 1.42092 0.96325 0.88389 0.89815 1.26145 0.97177 0.96382 1.01899 1.69693 1.48419 1.08990 1.29146 0.84871 0.78450 0.77811 0.76851 1.19524 1.19656 1.19444 1.19892 1.00659 0.94454 0.95115 1.21149 1.00109 0.93504 0.99301 1.21450 0.98289 1.01155 0.93187 1.21530 0.99247 0.94320 0.99273 1.21430 0.99207 0.95181 0.98330 1.21221 0.98859 1.00552 0.93388 0.93356 0.91287 0.90366 0.75009 0.87840 0.87603 0.89057 0.89171 0.77063 0.91261 0.84937 0.84028 0.84006 0.84106 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.46 71.98 0.68 -2.08 16 2 C 0.18 3.60 2.78 44.25 0.12 3.72 16 3 H 0.08 1.84 7.44 -2.39 -0.02 1.83 16 4 N -0.71 -15.00 5.03 -446.08 -2.24 -17.24 16 5 C 0.52 14.76 7.79 87.66 0.68 15.44 16 6 O -0.57 -20.20 15.64 -3.04 -0.05 -20.25 16 7 C -0.11 -3.34 4.99 29.85 0.15 -3.19 16 8 C -0.10 -3.81 4.99 29.85 0.15 -3.66 16 9 C 0.44 21.26 7.78 87.66 0.68 21.94 16 10 O -0.63 -33.96 15.56 -3.07 -0.05 -34.00 16 11 N -0.57 -30.43 5.29 -306.99 -1.62 -32.05 16 12 C -0.34 -19.34 9.68 84.04 0.81 -18.53 16 13 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 14 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 15 N -0.92 -51.07 13.05 21.66 0.28 -50.79 16 16 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 C -0.10 -1.68 4.95 -19.87 -0.10 -1.78 16 21 C -0.12 -1.76 9.05 22.27 0.20 -1.56 16 22 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 23 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 24 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 25 C -0.12 -1.89 9.67 22.27 0.22 -1.68 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.41 6.66 6.89 -92.71 -0.64 6.03 16 30 H 0.10 3.03 8.10 -2.38 -0.02 3.02 16 31 H 0.11 3.05 8.10 -2.39 -0.02 3.03 16 32 H 0.09 3.27 8.10 -2.39 -0.02 3.25 16 33 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 34 H 0.40 20.39 7.90 -92.71 -0.73 19.66 16 35 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.13 1.53 6.93 -2.91 -0.02 1.51 16 37 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.13 1.76 8.04 -2.91 -0.02 1.74 16 Total: -1.00 -71.01 345.88 2.78 -68.23 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.31 Total: 36.61 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 4.74 Total: 4.24 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -3.58 Total: -100.08 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.10 Total: -54.25 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -71.01 2.78 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896996986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.238 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds