Wall clock time and date at job start Tue Mar 31 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.66973 * 2 1 4 4 C 1.54697 * 110.90683 * 123.33127 * 2 1 3 5 5 C 1.51663 * 101.95791 * 143.65176 * 4 2 1 6 6 C 1.37724 * 132.08754 * 164.37559 * 5 4 2 7 7 C 1.38943 * 119.91625 * 180.90952 * 6 5 4 8 8 N 1.39935 * 120.18816 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99573 * 179.72285 * 8 7 6 10 10 C 1.50703 * 109.47138 * 180.27817 * 9 8 7 11 11 O 1.21283 * 120.00006 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00069 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00178 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00300 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99720 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99850 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46802 * 90.00337 * 18 16 14 20 20 H 1.48498 * 109.47429 * 210.00671 * 18 16 14 21 21 H 1.48502 * 109.46977 * 330.01042 * 18 16 14 22 22 C 1.38876 * 119.61482 * 0.24565 * 7 6 5 23 23 C 1.37890 * 120.26792 * 359.30656 * 22 7 6 24 24 C 1.38859 * 107.05731 * 344.84841 * 5 4 2 25 25 O 1.36271 * 111.19314 * 358.55491 * 24 5 4 26 26 H 1.08999 * 109.47216 * 181.76831 * 1 2 3 27 27 H 1.08997 * 109.46794 * 301.76960 * 1 2 3 28 28 H 1.09004 * 109.46916 * 61.76799 * 1 2 3 29 29 H 1.09003 * 110.93308 * 25.48570 * 4 2 1 30 30 H 1.09001 * 110.93303 * 261.82090 * 4 2 1 31 31 H 1.07997 * 120.03911 * 0.88772 * 6 5 4 32 32 H 0.97001 * 120.00577 * 0.02562 * 8 7 6 33 33 H 1.09009 * 109.47454 * 300.27392 * 9 8 7 34 34 H 1.08998 * 109.47492 * 60.27687 * 9 8 7 35 35 H 0.97002 * 120.00050 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.47293 * 299.99810 * 13 12 10 37 37 H 1.09006 * 109.47119 * 59.99855 * 13 12 10 38 38 H 0.96999 * 120.00124 * 180.02562 * 17 16 14 39 39 H 1.07995 * 119.86457 * 179.55684 * 22 7 6 40 40 H 1.07997 * 119.83504 * 180.25455 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0821 -0.7941 1.2074 5 6 3.3106 -1.4558 0.6132 6 6 4.4009 -2.0668 1.1916 7 6 5.4120 -2.5829 0.3905 8 7 6.5226 -3.2044 0.9722 9 6 7.5834 -3.7525 0.1234 10 6 8.6520 -4.3683 0.9893 11 8 8.5390 -4.3506 2.1968 12 7 9.7339 -4.9377 0.4221 13 6 10.7730 -5.5359 1.2639 14 6 11.8641 -6.0998 0.3907 15 1 11.7907 -6.0210 -0.6839 16 6 12.9556 -6.7173 0.9637 17 7 13.9080 -7.2090 0.2016 18 14 13.0824 -6.8543 2.8223 19 1 12.4448 -8.1185 3.2700 20 1 14.5124 -6.8522 3.2225 21 1 12.3904 -5.7011 3.4520 22 6 5.3167 -2.4733 -0.9906 23 6 4.2188 -1.8690 -1.5658 24 6 3.2008 -1.3534 -0.7673 25 8 2.0394 -0.7367 -1.1247 26 1 -0.3633 -1.0272 0.0317 27 1 -0.3633 0.5411 0.8737 28 1 -0.3633 0.4862 -0.9055 29 1 1.3625 -1.5402 1.5447 30 1 2.3563 -0.1236 2.0219 31 1 4.4700 -2.1443 2.2666 32 1 6.5881 -3.2762 1.9374 33 1 7.1651 -4.5145 -0.5345 34 1 8.0180 -2.9532 -0.4768 35 1 9.8245 -4.9516 -0.5436 36 1 11.1910 -4.7738 1.9217 37 1 10.3387 -6.3355 1.8642 38 1 14.6758 -7.6438 0.6047 39 1 6.1037 -2.8667 -1.6169 40 1 4.1499 -1.7912 -2.6407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901446062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:23 Heat of formation + Delta-G solvation = -44.377630 kcal Electronic energy + Delta-G solvation = -21588.132710 eV Core-core repulsion = 18174.937959 eV Total energy + Delta-G solvation = -3413.194752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18184 -39.41722 -38.09359 -34.85638 -34.30222 -33.31017 -32.46424 -31.10602 -30.03699 -28.24804 -26.66636 -25.94335 -22.59589 -22.24161 -21.87117 -21.01682 -20.04045 -18.01280 -17.58748 -16.99007 -16.76497 -16.07769 -15.48687 -15.46545 -15.26691 -14.52902 -14.27457 -14.00246 -13.80520 -13.55547 -13.48258 -13.24469 -13.06651 -12.72860 -12.63118 -12.51310 -12.39581 -12.24349 -12.02212 -11.53062 -11.17496 -11.10940 -10.83600 -10.80358 -10.04425 -9.58676 -9.55089 -9.47418 -8.95350 -8.85591 -8.32184 -7.17521 -6.27588 -4.30763 1.21547 1.49105 2.98461 3.07381 3.21651 3.24938 3.30256 3.36197 3.68689 3.94620 4.23047 4.27445 4.30556 4.63905 4.78525 4.87220 4.99062 5.07341 5.11838 5.14841 5.18837 5.30039 5.32522 5.36762 5.41366 5.51012 5.64286 5.71410 5.84637 6.00971 6.22177 6.35632 6.44417 6.67945 6.96465 7.00033 7.06767 7.27383 7.31393 7.74871 8.01084 8.38043 8.62406 8.75318 9.31514 10.84172 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.053906 B = 0.002326 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.298009 B =12036.098172 C =12505.019669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 H 0.082 0.918 4 C -0.107 4.107 5 C -0.125 4.125 6 C -0.148 4.148 7 C 0.203 3.797 8 N -0.732 5.732 9 C 0.105 3.895 10 C 0.496 3.504 11 O -0.556 6.556 12 N -0.699 5.699 13 C 0.220 3.780 14 C -0.547 4.547 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.169 4.169 23 C -0.085 4.085 24 C 0.038 3.962 25 O -0.307 6.307 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.411 0.589 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.400 0.600 36 H 0.027 0.973 37 H 0.022 0.978 38 H 0.268 0.732 39 H 0.131 0.869 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.948 13.632 -1.475 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 H 0.100 0.900 4 C -0.144 4.144 5 C -0.126 4.126 6 C -0.170 4.170 7 C 0.099 3.901 8 N -0.366 5.366 9 C -0.024 4.024 10 C 0.280 3.720 11 O -0.436 6.436 12 N -0.347 5.347 13 C 0.098 3.902 14 C -0.584 4.584 15 H 0.099 0.901 16 C -0.126 4.126 17 N -0.527 5.527 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.186 1.186 22 C -0.191 4.191 23 C -0.104 4.104 24 C -0.008 4.008 25 O -0.223 6.223 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.249 0.751 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.234 0.766 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.773 13.455 -0.945 27.333 hybrid contribution 0.421 -0.242 0.924 1.043 sum -23.352 13.214 -0.021 26.831 Atomic orbital electron populations 1.21872 0.92416 1.03335 1.02977 1.23276 0.95436 0.95386 0.83770 0.90021 1.21868 0.94844 0.99279 0.98385 1.20417 0.96207 1.02107 0.93868 1.19653 0.93679 1.04330 0.99369 1.17584 0.87424 0.93067 0.91992 1.44354 1.19390 1.63575 1.09272 1.21079 0.88611 0.99073 0.93591 1.20397 0.83350 0.79386 0.88884 1.90645 1.78398 1.59738 1.14783 1.46129 1.20779 1.56601 1.11191 1.19542 0.85804 0.93311 0.91513 1.21068 1.03665 1.38776 0.94933 0.90123 1.24798 0.95046 0.94232 0.98527 1.69875 1.09741 1.37462 1.35623 0.86811 0.77717 0.79635 0.85475 1.19814 1.20820 1.18572 1.20389 0.99736 1.06193 0.92823 1.19964 0.91068 1.00089 0.99322 1.19229 0.88571 1.00413 0.92596 1.86837 1.34726 1.63408 1.37280 0.91513 0.90507 0.91379 0.89152 0.89288 0.85896 0.75055 0.89432 0.89430 0.76648 0.95533 0.95995 0.92170 0.85085 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.61 37.16 0.36 -0.51 16 2 C 0.08 0.64 4.25 -25.84 -0.11 0.53 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.88 6.65 -26.52 -0.18 -1.06 16 5 C -0.12 -1.40 6.27 -104.11 -0.65 -2.05 16 6 C -0.15 -1.72 9.89 -39.51 -0.39 -2.11 16 7 C 0.20 2.49 6.66 -83.66 -0.56 1.93 16 8 N -0.73 -9.56 5.72 -59.73 -0.34 -9.90 16 9 C 0.10 1.33 5.40 -5.19 -0.03 1.30 16 10 C 0.50 8.70 7.90 -10.98 -0.09 8.61 16 11 O -0.56 -11.75 15.67 5.56 0.09 -11.67 16 12 N -0.70 -13.21 5.55 -61.47 -0.34 -13.55 16 13 C 0.22 5.22 4.50 -5.19 -0.02 5.20 16 14 C -0.55 -14.59 9.83 -34.44 -0.34 -14.93 16 15 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 16 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 17 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 18 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 22 C -0.17 -1.90 9.30 -39.47 -0.37 -2.27 16 23 C -0.09 -0.96 10.06 -39.32 -0.40 -1.36 16 24 C 0.04 0.46 7.03 -38.97 -0.27 0.18 16 25 O -0.31 -3.57 10.82 -20.61 -0.22 -3.79 16 26 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.67 7.91 -51.93 -0.41 0.26 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.41 5.76 7.46 -40.82 -0.30 5.46 16 33 H 0.09 0.95 7.97 -51.92 -0.41 0.54 16 34 H 0.09 0.95 7.95 -51.93 -0.41 0.53 16 35 H 0.40 6.48 8.32 -40.82 -0.34 6.14 16 36 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 37 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.13 1.25 6.74 -52.49 -0.35 0.89 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -32.11 336.80 -8.32 -40.43 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.54 Total: 6.72 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.14 Total: -4.47 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.09 Total: -48.66 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.14 Total: -15.46 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.11 -8.32 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901446062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.950 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds