Wall clock time and date at job start Tue Mar 31 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.66973 * 2 1 4 4 C 1.54697 * 110.90683 * 123.33127 * 2 1 3 5 5 C 1.51663 * 101.95791 * 143.65176 * 4 2 1 6 6 C 1.37724 * 132.08754 * 164.37559 * 5 4 2 7 7 C 1.38943 * 119.91625 * 180.90952 * 6 5 4 8 8 N 1.39935 * 120.18816 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99573 * 179.72285 * 8 7 6 10 10 C 1.50703 * 109.47138 * 180.27817 * 9 8 7 11 11 O 1.21283 * 120.00006 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00069 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00178 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00300 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99720 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99850 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46802 * 90.00337 * 18 16 14 20 20 H 1.48498 * 109.47429 * 210.00671 * 18 16 14 21 21 H 1.48502 * 109.46977 * 330.01042 * 18 16 14 22 22 C 1.38876 * 119.61482 * 0.24565 * 7 6 5 23 23 C 1.37890 * 120.26792 * 359.30656 * 22 7 6 24 24 C 1.38859 * 107.05731 * 344.84841 * 5 4 2 25 25 O 1.36271 * 111.19314 * 358.55491 * 24 5 4 26 26 H 1.08999 * 109.47216 * 181.76831 * 1 2 3 27 27 H 1.08997 * 109.46794 * 301.76960 * 1 2 3 28 28 H 1.09004 * 109.46916 * 61.76799 * 1 2 3 29 29 H 1.09003 * 110.93308 * 25.48570 * 4 2 1 30 30 H 1.09001 * 110.93303 * 261.82090 * 4 2 1 31 31 H 1.07997 * 120.03911 * 0.88772 * 6 5 4 32 32 H 0.97001 * 120.00577 * 0.02562 * 8 7 6 33 33 H 1.09009 * 109.47454 * 300.27392 * 9 8 7 34 34 H 1.08998 * 109.47492 * 60.27687 * 9 8 7 35 35 H 0.97002 * 120.00050 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.47293 * 299.99810 * 13 12 10 37 37 H 1.09006 * 109.47119 * 59.99855 * 13 12 10 38 38 H 0.96999 * 120.00124 * 180.02562 * 17 16 14 39 39 H 1.07995 * 119.86457 * 179.55684 * 22 7 6 40 40 H 1.07997 * 119.83504 * 180.25455 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0821 -0.7941 1.2074 5 6 3.3106 -1.4558 0.6132 6 6 4.4009 -2.0668 1.1916 7 6 5.4120 -2.5829 0.3905 8 7 6.5226 -3.2044 0.9722 9 6 7.5834 -3.7525 0.1234 10 6 8.6520 -4.3683 0.9893 11 8 8.5390 -4.3506 2.1968 12 7 9.7339 -4.9377 0.4221 13 6 10.7730 -5.5359 1.2639 14 6 11.8641 -6.0998 0.3907 15 1 11.7907 -6.0210 -0.6839 16 6 12.9556 -6.7173 0.9637 17 7 13.9080 -7.2090 0.2016 18 14 13.0824 -6.8543 2.8223 19 1 12.4448 -8.1185 3.2700 20 1 14.5124 -6.8522 3.2225 21 1 12.3904 -5.7011 3.4520 22 6 5.3167 -2.4733 -0.9906 23 6 4.2188 -1.8690 -1.5658 24 6 3.2008 -1.3534 -0.7673 25 8 2.0394 -0.7367 -1.1247 26 1 -0.3633 -1.0272 0.0317 27 1 -0.3633 0.5411 0.8737 28 1 -0.3633 0.4862 -0.9055 29 1 1.3625 -1.5402 1.5447 30 1 2.3563 -0.1236 2.0219 31 1 4.4700 -2.1443 2.2666 32 1 6.5881 -3.2762 1.9374 33 1 7.1651 -4.5145 -0.5345 34 1 8.0180 -2.9532 -0.4768 35 1 9.8245 -4.9516 -0.5436 36 1 11.1910 -4.7738 1.9217 37 1 10.3387 -6.3355 1.8642 38 1 14.6758 -7.6438 0.6047 39 1 6.1037 -2.8667 -1.6169 40 1 4.1499 -1.7912 -2.6407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901446062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:23 Heat of formation + Delta-G solvation = -66.856168 kcal Electronic energy + Delta-G solvation = -21589.107453 eV Core-core repulsion = 18174.937959 eV Total energy + Delta-G solvation = -3414.169494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96165 -40.79513 -39.04574 -36.32677 -35.54041 -34.44997 -34.00579 -31.80646 -31.21036 -29.79973 -27.44753 -27.05909 -24.08235 -23.36614 -22.53073 -22.09360 -21.39465 -19.44800 -18.40011 -18.34985 -17.86274 -17.24018 -16.87421 -16.75947 -16.47030 -15.84582 -15.37216 -15.09796 -14.99680 -14.73408 -14.44125 -14.33521 -14.10115 -13.90588 -13.81645 -13.64081 -13.22957 -13.18857 -13.05300 -12.87314 -12.71109 -12.14168 -11.95086 -11.89277 -11.66954 -11.58336 -10.99747 -10.93010 -10.41919 -10.00467 -9.77380 -8.40640 -8.07523 -6.47881 0.38110 0.61257 1.32205 1.34972 1.46334 1.58885 2.03163 2.27118 2.42322 2.72789 2.84893 2.94785 3.52697 3.66948 3.78233 3.98507 4.08962 4.24502 4.27567 4.34887 4.40902 4.41418 4.64585 4.70229 4.74824 4.77749 4.87540 4.97431 5.00756 5.10163 5.19880 5.24477 5.27431 5.36514 5.44045 5.52423 5.62404 6.04335 6.18083 6.42369 6.53430 6.69724 6.81238 7.12665 7.30565 8.73869 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.053906 B = 0.002326 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.298009 B =12036.098172 C =12505.019669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.090 0.910 4 C -0.104 4.104 5 C -0.134 4.134 6 C -0.158 4.158 7 C 0.190 3.810 8 N -0.740 5.740 9 C 0.117 3.883 10 C 0.497 3.503 11 O -0.592 6.592 12 N -0.699 5.699 13 C 0.231 3.769 14 C -0.547 4.547 15 H 0.062 0.938 16 C 0.025 3.975 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.170 4.170 23 C -0.094 4.094 24 C 0.021 3.979 25 O -0.326 6.326 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.405 0.595 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.413 0.587 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.272 0.728 39 H 0.150 0.850 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.502 14.544 -1.144 29.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.108 0.892 4 C -0.141 4.141 5 C -0.135 4.135 6 C -0.180 4.180 7 C 0.087 3.913 8 N -0.373 5.373 9 C -0.010 4.010 10 C 0.284 3.716 11 O -0.474 6.474 12 N -0.349 5.349 13 C 0.107 3.893 14 C -0.585 4.585 15 H 0.080 0.920 16 C -0.175 4.175 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.193 4.193 23 C -0.113 4.113 24 C -0.025 4.025 25 O -0.242 6.242 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.148 0.852 32 H 0.242 0.758 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.249 0.751 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.167 0.833 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.360 14.387 -0.652 29.164 hybrid contribution 0.824 -0.470 0.753 1.211 sum -24.536 13.916 0.101 28.208 Atomic orbital electron populations 1.21890 0.90646 1.03455 1.04156 1.23566 0.96835 0.95376 0.82756 0.89237 1.21960 0.93735 0.99608 0.98800 1.20753 0.96911 1.01819 0.94044 1.19831 0.93852 1.04461 0.99868 1.17727 0.87386 0.93602 0.92550 1.44352 1.19798 1.64245 1.08947 1.21088 0.87103 1.00209 0.92624 1.21165 0.83381 0.78178 0.88871 1.90630 1.79120 1.60873 1.16782 1.45932 1.20481 1.56904 1.11542 1.19124 0.86138 0.92715 0.91281 1.21299 1.04432 1.38226 0.94577 0.91979 1.25606 0.94893 0.94115 1.02883 1.69979 1.10584 1.38764 1.37560 0.85859 0.78041 0.79740 0.80243 1.19063 1.19970 1.18417 1.20602 1.00168 1.05871 0.92623 1.20226 0.91025 0.99891 1.00193 1.19542 0.88966 1.00744 0.93238 1.86814 1.34625 1.63778 1.38968 0.91979 0.88167 0.91277 0.88317 0.87561 0.85228 0.75812 0.86908 0.86861 0.75062 0.96771 0.96899 0.91859 0.83273 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.61 71.98 0.69 -0.71 16 2 C 0.07 1.04 4.25 31.17 0.13 1.17 16 3 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.10 -1.53 6.65 30.73 0.20 -1.33 16 5 C -0.13 -2.85 6.27 -19.53 -0.12 -2.97 16 6 C -0.16 -3.51 9.89 22.32 0.22 -3.29 16 7 C 0.19 4.38 6.66 38.17 0.25 4.63 16 8 N -0.74 -18.14 5.72 -342.89 -1.96 -20.10 16 9 C 0.12 2.68 5.40 85.63 0.46 3.15 16 10 C 0.50 16.76 7.90 87.66 0.69 17.45 16 11 O -0.59 -24.66 15.67 -3.04 -0.05 -24.71 16 12 N -0.70 -25.69 5.55 -466.78 -2.59 -28.28 16 13 C 0.23 10.87 4.50 85.63 0.38 11.25 16 14 C -0.55 -29.33 9.83 25.60 0.25 -29.07 16 15 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 16 C 0.03 1.41 5.47 84.65 0.46 1.88 16 17 N -0.93 -54.71 13.96 21.45 0.30 -54.41 16 18 Si 0.94 43.24 27.47 68.60 1.88 45.12 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 22 C -0.17 -3.51 9.30 22.34 0.21 -3.30 16 23 C -0.09 -2.00 10.06 22.44 0.23 -1.77 16 24 C 0.02 0.48 7.03 22.67 0.16 0.64 16 25 O -0.33 -7.26 10.82 -96.65 -1.05 -8.30 16 26 H 0.06 0.66 8.12 -2.39 -0.02 0.65 16 27 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 1.28 7.91 -2.39 -0.02 1.26 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.40 11.01 7.46 -92.71 -0.69 10.32 16 33 H 0.11 2.08 7.97 -2.38 -0.02 2.06 16 34 H 0.11 2.07 7.95 -2.39 -0.02 2.06 16 35 H 0.41 12.86 8.32 -92.71 -0.77 12.09 16 36 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 37 H 0.01 0.64 7.57 -2.38 -0.02 0.62 16 38 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.15 2.41 6.74 -2.91 -0.02 2.39 16 40 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -68.99 336.80 0.32 -68.67 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.45 Total: 24.28 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 4.23 Total: -2.27 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -4.25 Total: -102.79 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.09 Total: -33.01 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -68.99 0.32 -68.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901446062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.810 kcal (2) G-P(sol) polarization free energy of solvation -68.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds