Wall clock time and date at job start Tue Mar 31 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.66892 * 2 1 4 4 C 1.54713 * 110.75151 * 123.42305 * 2 1 3 5 5 C 1.51637 * 101.94392 * 143.55505 * 4 2 1 6 6 C 1.37747 * 132.17222 * 164.39737 * 5 4 2 7 7 C 1.38342 * 119.97829 * 181.15431 * 6 5 4 8 8 C 1.50705 * 120.11594 * 179.74369 * 7 6 5 9 9 N 1.46492 * 109.47337 * 89.99470 * 8 7 6 10 10 C 1.34776 * 120.00360 * 180.02562 * 9 8 7 11 11 O 1.21593 * 119.99655 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00608 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00506 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47305 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99774 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00018 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99679 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00079 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46734 * 60.00322 * 18 16 14 20 20 H 1.48501 * 109.47048 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47151 * 300.00226 * 18 16 14 22 22 C 1.38292 * 119.76964 * 359.48091 * 7 6 5 23 23 C 1.37933 * 120.35070 * 0.32906 * 22 7 6 24 24 C 1.38888 * 107.04711 * 344.85822 * 5 4 2 25 25 O 1.36144 * 111.21714 * 358.56520 * 24 5 4 26 26 H 1.09004 * 109.46751 * 181.76831 * 1 2 3 27 27 H 1.08996 * 109.47311 * 301.76585 * 1 2 3 28 28 H 1.08998 * 109.47193 * 61.77111 * 1 2 3 29 29 H 1.08994 * 110.93238 * 25.38510 * 4 2 1 30 30 H 1.09010 * 110.93051 * 261.71525 * 4 2 1 31 31 H 1.08002 * 120.00677 * 0.86647 * 6 5 4 32 32 H 1.09005 * 109.46747 * 209.99419 * 8 7 6 33 33 H 1.08999 * 109.46951 * 329.99190 * 8 7 6 34 34 H 0.97006 * 120.00167 * 0.02562 * 9 8 7 35 35 H 0.97006 * 119.99919 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.46755 * 299.99737 * 13 12 10 37 37 H 1.08995 * 109.46805 * 59.99496 * 13 12 10 38 38 H 0.96999 * 119.99649 * 179.97438 * 17 16 14 39 39 H 1.07997 * 119.82432 * 180.02562 * 22 7 6 40 40 H 1.07998 * 119.88410 * 179.72864 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0782 -0.7969 1.2075 5 6 3.3054 -1.4612 0.6141 6 6 4.3941 -2.0767 1.1914 7 6 5.4026 -2.5877 0.3941 8 6 6.5979 -3.2565 1.0227 9 7 6.3308 -4.6886 1.1776 10 6 7.2648 -5.4933 1.7221 11 8 8.3294 -5.0307 2.0842 12 7 7.0193 -6.8108 1.8642 13 6 8.0349 -7.6857 2.4555 14 6 7.5153 -9.0995 2.5007 15 1 6.5273 -9.3239 2.1268 16 6 8.3013 -10.1066 3.0194 17 7 9.5043 -9.8331 3.4752 18 14 7.6571 -11.8590 3.0761 19 1 7.3493 -12.3180 1.6977 20 1 8.6870 -12.7459 3.6742 21 1 6.4230 -11.9063 3.9007 22 6 5.3074 -2.4874 -0.9819 23 6 4.2163 -1.8750 -1.5623 24 6 3.1974 -1.3566 -0.7666 25 8 2.0395 -0.7366 -1.1248 26 1 -0.3633 -1.0272 0.0317 27 1 -0.3634 0.5410 0.8737 28 1 -0.3633 0.4861 -0.9054 29 1 1.3561 -1.5412 1.5430 30 1 2.3533 -0.1279 2.0230 31 1 4.4625 -2.1562 2.2663 32 1 7.4700 -3.1166 0.3840 33 1 6.7890 -2.8147 2.0006 34 1 5.4816 -5.0577 0.8884 35 1 6.1702 -7.1799 1.5749 36 1 8.9412 -7.6504 1.8511 37 1 8.2597 -7.3490 3.4675 38 1 10.0572 -10.5415 3.8404 39 1 6.0940 -2.8864 -1.6051 40 1 4.1518 -1.7970 -2.6375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922229859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:19 Heat of formation + Delta-G solvation = -46.278768 kcal Electronic energy + Delta-G solvation = -21674.324168 eV Core-core repulsion = 18261.046977 eV Total energy + Delta-G solvation = -3413.277191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45982 -39.26242 -38.02056 -34.55495 -33.89827 -33.51235 -32.29628 -31.40667 -30.58447 -27.54849 -26.88608 -25.34466 -22.60326 -22.30371 -22.05861 -21.12746 -20.12831 -18.11337 -17.79649 -17.09247 -16.38088 -15.86685 -15.64043 -15.15320 -14.68791 -14.59795 -14.46226 -14.03642 -13.68608 -13.45519 -13.27855 -13.20061 -13.02664 -12.86870 -12.55085 -12.38586 -11.94723 -11.85148 -11.64245 -11.45435 -11.14061 -10.94808 -10.93818 -10.84074 -10.27446 -9.42488 -9.35208 -9.13220 -8.74471 -8.63587 -8.33599 -7.71431 -6.12301 -4.18733 0.99266 1.09274 2.87116 3.23841 3.27921 3.32688 3.34587 3.73627 3.99247 4.06232 4.11729 4.36181 4.48127 4.59955 4.65325 4.74874 4.88608 5.04707 5.14201 5.19851 5.21707 5.23527 5.24901 5.43411 5.49530 5.54343 5.61936 5.84654 5.87106 6.00898 6.12709 6.35262 6.42161 6.88149 6.92315 7.16776 7.55651 7.59244 7.61090 7.95036 8.08473 8.80045 8.98766 9.37270 9.51898 10.97913 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.002488 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.049184 B =11253.515827 C =11708.776548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.086 0.914 4 C -0.106 4.106 5 C -0.179 4.179 6 C -0.049 4.049 7 C -0.128 4.128 8 C 0.187 3.813 9 N -0.754 5.754 10 C 0.693 3.307 11 O -0.602 6.602 12 N -0.730 5.730 13 C 0.267 3.733 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.064 4.064 23 C -0.140 4.140 24 C 0.109 3.891 25 O -0.304 6.304 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.392 0.608 35 H 0.386 0.614 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.135 0.865 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 20.349 -7.891 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.104 0.896 4 C -0.143 4.143 5 C -0.180 4.180 6 C -0.068 4.068 7 C -0.129 4.129 8 C 0.063 3.937 9 N -0.412 5.412 10 C 0.392 3.608 11 O -0.481 6.481 12 N -0.382 5.382 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.082 4.082 23 C -0.159 4.159 24 C 0.063 3.937 25 O -0.218 6.218 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.225 0.775 35 H 0.218 0.782 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.622 20.664 -7.638 27.597 hybrid contribution -1.092 -1.268 -0.074 1.675 sum -17.713 19.396 -7.712 27.376 Atomic orbital electron populations 1.21891 0.92067 1.03553 1.03202 1.23396 0.95786 0.95411 0.83390 0.89580 1.21865 0.94795 0.99277 0.98326 1.20731 0.97836 1.05480 0.93927 1.20270 0.91232 0.95199 1.00105 1.19847 0.97223 1.02270 0.93544 1.19810 0.93757 0.79801 1.00331 1.45227 1.19312 1.07602 1.69081 1.16156 0.83650 0.81915 0.79042 1.90873 1.25058 1.75229 1.56962 1.45719 1.21102 1.05633 1.65727 1.18969 0.86187 0.86738 0.93498 1.21197 1.02044 0.92206 1.42578 0.92022 1.24947 0.94756 0.99429 0.94926 1.69973 1.08889 1.33471 1.39978 0.86471 0.78508 0.83496 0.78383 1.20105 1.21094 1.20114 1.20878 0.96828 0.96240 0.94299 1.20255 0.92385 1.03448 0.99828 1.19586 0.86826 0.94384 0.92862 1.86853 1.34472 1.62661 1.37840 0.91368 0.90235 0.91265 0.89008 0.89046 0.85432 0.91025 0.91169 0.77497 0.78175 0.95744 0.95766 0.92432 0.84701 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.60 37.16 0.36 -0.41 16 2 C 0.08 0.55 4.26 -25.83 -0.11 0.44 16 3 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -0.77 6.65 -26.52 -0.18 -0.95 16 5 C -0.18 -1.79 6.27 -104.10 -0.65 -2.44 16 6 C -0.05 -0.51 9.70 -39.72 -0.39 -0.90 16 7 C -0.13 -1.40 5.25 -104.56 -0.55 -1.95 16 8 C 0.19 2.48 5.80 -5.20 -0.03 2.45 16 9 N -0.75 -11.54 5.55 -66.42 -0.37 -11.91 16 10 C 0.69 14.55 8.57 -86.92 -0.74 13.81 16 11 O -0.60 -15.26 16.34 5.28 0.09 -15.18 16 12 N -0.73 -15.94 5.55 -66.42 -0.37 -16.31 16 13 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 14 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.06 -0.65 9.68 -39.67 -0.38 -1.03 16 23 C -0.14 -1.42 10.06 -39.31 -0.40 -1.82 16 24 C 0.11 1.17 7.03 -38.95 -0.27 0.90 16 25 O -0.30 -3.18 10.81 -20.20 -0.22 -3.40 16 26 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.62 7.90 -51.93 -0.41 0.21 16 30 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 33 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.39 5.04 8.48 -40.82 -0.35 4.70 16 35 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -34.02 343.37 -9.47 -43.49 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.70 Total: 5.98 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -3.79 Total: 1.77 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.00 Total: -53.88 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.13 Total: -18.57 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.02 -9.47 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.788 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds