Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.66892 * 2 1 4 4 C 1.54713 * 110.75151 * 123.42305 * 2 1 3 5 5 C 1.51637 * 101.94392 * 143.55505 * 4 2 1 6 6 C 1.37747 * 132.17222 * 164.39737 * 5 4 2 7 7 C 1.38342 * 119.97829 * 181.15431 * 6 5 4 8 8 C 1.50705 * 120.11594 * 179.74369 * 7 6 5 9 9 N 1.46492 * 109.47337 * 89.99470 * 8 7 6 10 10 C 1.34776 * 120.00360 * 180.02562 * 9 8 7 11 11 O 1.21593 * 119.99655 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00608 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00506 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47305 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99774 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00018 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99679 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00079 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46734 * 60.00322 * 18 16 14 20 20 H 1.48501 * 109.47048 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47151 * 300.00226 * 18 16 14 22 22 C 1.38292 * 119.76964 * 359.48091 * 7 6 5 23 23 C 1.37933 * 120.35070 * 0.32906 * 22 7 6 24 24 C 1.38888 * 107.04711 * 344.85822 * 5 4 2 25 25 O 1.36144 * 111.21714 * 358.56520 * 24 5 4 26 26 H 1.09004 * 109.46751 * 181.76831 * 1 2 3 27 27 H 1.08996 * 109.47311 * 301.76585 * 1 2 3 28 28 H 1.08998 * 109.47193 * 61.77111 * 1 2 3 29 29 H 1.08994 * 110.93238 * 25.38510 * 4 2 1 30 30 H 1.09010 * 110.93051 * 261.71525 * 4 2 1 31 31 H 1.08002 * 120.00677 * 0.86647 * 6 5 4 32 32 H 1.09005 * 109.46747 * 209.99419 * 8 7 6 33 33 H 1.08999 * 109.46951 * 329.99190 * 8 7 6 34 34 H 0.97006 * 120.00167 * 0.02562 * 9 8 7 35 35 H 0.97006 * 119.99919 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.46755 * 299.99737 * 13 12 10 37 37 H 1.08995 * 109.46805 * 59.99496 * 13 12 10 38 38 H 0.96999 * 119.99649 * 179.97438 * 17 16 14 39 39 H 1.07997 * 119.82432 * 180.02562 * 22 7 6 40 40 H 1.07998 * 119.88410 * 179.72864 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0782 -0.7969 1.2075 5 6 3.3054 -1.4612 0.6141 6 6 4.3941 -2.0767 1.1914 7 6 5.4026 -2.5877 0.3941 8 6 6.5979 -3.2565 1.0227 9 7 6.3308 -4.6886 1.1776 10 6 7.2648 -5.4933 1.7221 11 8 8.3294 -5.0307 2.0842 12 7 7.0193 -6.8108 1.8642 13 6 8.0349 -7.6857 2.4555 14 6 7.5153 -9.0995 2.5007 15 1 6.5273 -9.3239 2.1268 16 6 8.3013 -10.1066 3.0194 17 7 9.5043 -9.8331 3.4752 18 14 7.6571 -11.8590 3.0761 19 1 7.3493 -12.3180 1.6977 20 1 8.6870 -12.7459 3.6742 21 1 6.4230 -11.9063 3.9007 22 6 5.3074 -2.4874 -0.9819 23 6 4.2163 -1.8750 -1.5623 24 6 3.1974 -1.3566 -0.7666 25 8 2.0395 -0.7366 -1.1248 26 1 -0.3633 -1.0272 0.0317 27 1 -0.3634 0.5410 0.8737 28 1 -0.3633 0.4861 -0.9054 29 1 1.3561 -1.5412 1.5430 30 1 2.3533 -0.1279 2.0230 31 1 4.4625 -2.1562 2.2663 32 1 7.4700 -3.1166 0.3840 33 1 6.7890 -2.8147 2.0006 34 1 5.4816 -5.0577 0.8884 35 1 6.1702 -7.1799 1.5749 36 1 8.9412 -7.6504 1.8511 37 1 8.2597 -7.3490 3.4675 38 1 10.0572 -10.5415 3.8404 39 1 6.0940 -2.8864 -1.6051 40 1 4.1518 -1.7970 -2.6375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922229859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = -69.987181 kcal Electronic energy + Delta-G solvation = -21675.352242 eV Core-core repulsion = 18261.046977 eV Total energy + Delta-G solvation = -3414.305265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.17409 -40.86741 -38.95652 -36.24494 -35.55461 -34.31487 -34.13769 -32.15660 -31.57049 -29.26796 -27.77513 -26.50626 -24.49113 -23.14095 -22.64575 -22.02133 -21.85064 -19.83120 -18.49946 -18.11662 -17.79942 -17.44785 -16.66480 -16.53581 -16.35786 -15.96491 -15.22615 -15.13917 -14.95590 -14.72940 -14.27843 -14.11922 -14.02336 -13.98469 -13.66600 -13.48508 -13.25992 -12.95730 -12.89259 -12.66499 -12.64478 -12.21871 -12.10240 -11.81530 -11.65497 -11.48142 -11.24228 -10.77778 -10.26613 -9.89725 -9.56623 -9.13904 -8.26557 -6.42935 0.16406 0.31405 1.44381 1.48866 1.56858 1.94493 2.23118 2.26737 2.40847 2.71480 3.08097 3.38974 3.53093 3.63586 3.75330 3.88080 4.02461 4.14177 4.22828 4.35483 4.45178 4.63801 4.68983 4.70701 4.75551 4.90366 4.96574 5.10161 5.12858 5.20346 5.23706 5.29652 5.36234 5.49662 5.51695 5.56257 5.62333 5.69967 5.87155 6.18230 6.28093 6.68584 7.26082 7.32647 7.74084 8.85520 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.002488 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.049184 B =11253.515827 C =11708.776548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.097 0.903 4 C -0.103 4.103 5 C -0.185 4.185 6 C -0.053 4.053 7 C -0.133 4.133 8 C 0.189 3.811 9 N -0.729 5.729 10 C 0.692 3.308 11 O -0.648 6.648 12 N -0.724 5.724 13 C 0.286 3.714 14 C -0.556 4.556 15 H 0.083 0.917 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.986 3.014 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.063 4.063 23 C -0.147 4.147 24 C 0.097 3.903 25 O -0.321 6.321 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.404 0.596 36 H -0.014 1.014 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.146 0.854 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.358 20.276 -8.411 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.115 0.885 4 C -0.140 4.140 5 C -0.186 4.186 6 C -0.071 4.071 7 C -0.134 4.134 8 C 0.066 3.934 9 N -0.386 5.386 10 C 0.392 3.608 11 O -0.531 6.531 12 N -0.378 5.378 13 C 0.162 3.838 14 C -0.593 4.593 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.082 4.082 23 C -0.166 4.166 24 C 0.051 3.949 25 O -0.236 6.236 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.244 0.756 35 H 0.239 0.761 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.078 0.922 39 H 0.164 0.836 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.360 20.632 -8.198 29.456 hybrid contribution -0.308 -1.098 0.052 1.141 sum -19.667 19.534 -8.146 28.892 Atomic orbital electron populations 1.21914 0.90526 1.03575 1.04320 1.23686 0.97013 0.95530 0.82358 0.88547 1.21959 0.93686 0.99597 0.98785 1.21017 0.98448 1.05129 0.94020 1.20365 0.91173 0.95099 1.00506 1.19591 0.96683 1.03204 0.93914 1.19869 0.94970 0.78279 1.00303 1.45024 1.18575 1.07992 1.67023 1.16298 0.83820 0.81824 0.78888 1.90842 1.27401 1.75985 1.58905 1.45316 1.20881 1.05753 1.65820 1.18405 0.86314 0.88121 0.90940 1.21572 1.02988 0.92143 1.42638 0.89910 1.26068 0.94778 1.04707 0.94081 1.70139 1.10577 1.35245 1.40909 0.85193 0.78017 0.76844 0.79053 1.18714 1.21062 1.18684 1.20988 0.97138 0.95996 0.94043 1.20450 0.92250 1.03230 1.00637 1.19855 0.87105 0.94463 0.93428 1.86839 1.34321 1.62948 1.39489 0.91944 0.88010 0.91184 0.88327 0.87255 0.84671 0.91434 0.91664 0.75608 0.76073 0.99604 0.99611 0.92241 0.83643 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.60 71.98 0.69 -0.48 16 2 C 0.07 0.86 4.26 31.18 0.13 0.99 16 3 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 4 C -0.10 -1.28 6.65 30.73 0.20 -1.08 16 5 C -0.19 -3.40 6.27 -19.53 -0.12 -3.52 16 6 C -0.05 -1.02 9.70 22.18 0.22 -0.80 16 7 C -0.13 -2.76 5.25 -19.83 -0.10 -2.86 16 8 C 0.19 4.92 5.80 85.64 0.50 5.42 16 9 N -0.73 -21.76 5.55 -482.30 -2.68 -24.44 16 10 C 0.69 29.38 8.57 179.06 1.53 30.92 16 11 O -0.65 -33.96 16.34 -4.01 -0.07 -34.02 16 12 N -0.72 -31.89 5.55 -482.30 -2.68 -34.56 16 13 C 0.29 16.07 5.43 85.63 0.46 16.54 16 14 C -0.56 -30.64 9.28 25.60 0.24 -30.40 16 15 H 0.08 4.12 7.60 -2.91 -0.02 4.09 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 18 Si 0.99 42.61 29.54 68.60 2.03 44.64 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.06 -1.19 9.68 22.21 0.21 -0.98 16 23 C -0.15 -2.78 10.06 22.45 0.23 -2.55 16 24 C 0.10 1.96 7.03 22.68 0.16 2.12 16 25 O -0.32 -6.27 10.81 -95.19 -1.03 -7.30 16 26 H 0.06 0.58 8.11 -2.39 -0.02 0.56 16 27 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 1.09 7.90 -2.39 -0.02 1.07 16 30 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.07 1.84 8.09 -2.38 -0.02 1.82 16 33 H 0.07 1.79 8.09 -2.39 -0.02 1.77 16 34 H 0.41 9.81 8.48 -92.70 -0.79 9.02 16 35 H 0.40 14.72 8.34 -92.70 -0.77 13.95 16 36 H -0.01 -0.89 8.14 -2.39 -0.02 -0.90 16 37 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -75.20 343.37 0.18 -75.02 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.49 Total: 23.05 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 4.81 Total: 13.95 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -5.07 Total: -115.34 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.09 Total: -41.32 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -75.20 0.18 -75.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.035 kcal (2) G-P(sol) polarization free energy of solvation -75.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds