Wall clock time and date at job start Tue Mar 31 2020 06:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.82977 * 2 1 4 4 C 1.55342 * 111.00850 * 123.79147 * 2 1 3 5 5 O 1.44375 * 103.49932 * 155.20353 * 4 2 1 6 6 C 1.43739 * 106.97917 * 319.90851 * 5 4 2 7 7 C 1.54096 * 107.29272 * 26.51271 * 6 5 4 8 8 H 1.08999 * 110.48801 * 116.78523 * 7 6 5 9 9 N 1.46504 * 110.48967 * 239.29132 * 7 6 5 10 10 C 1.34770 * 120.00470 * 271.75832 * 9 7 6 11 11 O 1.21580 * 119.99828 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00134 * 179.72293 * 10 9 7 13 13 C 1.39242 * 119.99854 * 175.98529 * 12 10 9 14 14 C 1.39483 * 119.83083 * 215.02085 * 13 12 10 15 15 C 1.36380 * 120.16567 * 179.71782 * 14 13 12 16 16 C 1.40861 * 119.82748 * 0.55682 * 15 14 13 17 17 C 1.41158 * 120.16234 * 179.74173 * 16 15 14 18 18 H 1.08001 * 120.00012 * 214.76257 * 17 16 15 19 19 C 1.39889 * 120.00402 * 34.76300 * 17 16 15 20 20 N 1.30885 * 119.99467 * 355.56261 * 19 17 16 21 21 Si 1.86796 * 120.00397 * 175.55633 * 19 17 16 22 22 H 1.48506 * 109.47041 * 90.00173 * 21 19 17 23 23 H 1.48499 * 109.47213 * 209.99876 * 21 19 17 24 24 H 1.48497 * 109.47476 * 330.00266 * 21 19 17 25 25 C 1.40867 * 119.67564 * 359.71960 * 16 15 14 26 26 C 1.36378 * 119.82871 * 359.97438 * 25 16 15 27 27 H 1.08992 * 109.47522 * 183.64644 * 1 2 3 28 28 H 1.09005 * 109.46727 * 303.64330 * 1 2 3 29 29 H 1.09001 * 109.47013 * 63.63843 * 1 2 3 30 30 H 1.08997 * 110.63979 * 36.68642 * 4 2 1 31 31 H 1.08998 * 110.58326 * 273.69740 * 4 2 1 32 32 H 1.09001 * 109.88081 * 267.08777 * 6 5 4 33 33 H 1.09003 * 110.00638 * 146.00908 * 6 5 4 34 34 H 0.96998 * 119.99497 * 91.75044 * 9 7 6 35 35 H 0.96997 * 119.99869 * 355.98004 * 12 10 9 36 36 H 1.08004 * 119.91858 * 359.97438 * 14 13 12 37 37 H 1.07995 * 120.08493 * 180.27449 * 15 14 13 38 38 H 0.96997 * 119.99806 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.08973 * 179.97438 * 25 16 15 40 40 H 1.08001 * 119.91691 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0869 -0.8065 1.2052 5 8 3.3975 -1.2167 0.7595 6 6 3.2733 -1.5881 -0.6235 7 6 2.0824 -0.8012 -1.2040 8 1 2.4186 -0.1252 -1.9902 9 7 1.0637 -1.7191 -1.7199 10 6 1.1333 -2.1565 -2.9928 11 8 2.0411 -1.7889 -3.7131 12 7 0.1993 -3.0053 -3.4656 13 6 0.2229 -3.3916 -4.8032 14 6 -0.9750 -3.6074 -5.4843 15 6 -0.9599 -3.9803 -6.7961 16 6 0.2698 -4.1588 -7.4596 17 6 0.2937 -4.5499 -8.8157 18 1 1.0765 -5.2008 -9.1763 19 6 -0.6965 -4.0946 -9.6927 20 7 -1.6930 -3.3775 -9.2389 21 14 -0.5965 -4.5098 -11.5112 22 1 -1.3077 -5.7882 -11.7669 23 1 -1.2298 -3.4243 -12.3023 24 1 0.8272 -4.6471 -11.9101 25 6 1.4755 -3.9445 -6.7634 26 6 1.4444 -3.5658 -5.4537 27 1 -0.3634 -1.0255 0.0654 28 1 -0.3633 0.5694 0.8556 29 1 -0.3633 0.4563 -0.9208 30 1 1.4611 -1.6756 1.4080 31 1 2.1629 -0.1724 2.0884 32 1 3.0849 -2.6587 -0.7044 33 1 4.1854 -1.3309 -1.1621 34 1 0.3393 -2.0121 -1.1453 35 1 -0.4893 -3.3471 -2.8742 36 1 -1.9169 -3.4749 -4.9729 37 1 -1.8882 -4.1428 -7.3234 38 1 -2.3798 -3.0621 -9.8469 39 1 2.4221 -4.0798 -7.2655 40 1 2.3679 -3.4007 -4.9186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925996166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:28 Heat of formation + Delta-G solvation = -46.858593 kcal Electronic energy + Delta-G solvation = -22594.210606 eV Core-core repulsion = 19180.908272 eV Total energy + Delta-G solvation = -3413.302334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56093 -39.23789 -37.33989 -35.01796 -34.35096 -32.99789 -32.30346 -29.63246 -29.27960 -28.30780 -26.60725 -24.89859 -22.90905 -21.87711 -21.05528 -20.22651 -20.10583 -18.26047 -17.25590 -16.85209 -16.41086 -15.86005 -15.57077 -15.18219 -14.92368 -14.46388 -14.27500 -13.87326 -13.67171 -13.21454 -12.98112 -12.68659 -12.51099 -12.17368 -12.08033 -11.70450 -11.52906 -11.35308 -11.30740 -11.12602 -10.97945 -10.94359 -10.70140 -10.10078 -9.92100 -9.53797 -9.45030 -9.22119 -9.03523 -8.86016 -7.51812 -6.81842 -6.58917 -4.31191 2.66409 2.93149 3.10281 3.11011 3.14556 3.19085 3.63540 3.72003 4.00282 4.16876 4.44719 4.57207 4.64088 4.73464 4.87233 5.07430 5.10109 5.24558 5.35495 5.44872 5.66707 5.67706 5.74128 5.80355 5.85708 6.20653 6.39788 6.46928 6.68875 6.77938 6.81735 7.06672 7.17195 7.28334 7.41560 7.67610 7.87585 7.98509 8.11829 8.33306 8.45200 8.66598 8.93462 8.96059 9.08706 10.32308 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.002963 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.780765 B = 9446.224321 C = 9769.952760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 H 0.098 0.902 4 C 0.049 3.951 5 O -0.378 6.378 6 C 0.035 3.965 7 C 0.137 3.863 8 H 0.105 0.895 9 N -0.745 5.745 10 C 0.694 3.306 11 O -0.576 6.576 12 N -0.666 5.666 13 C 0.022 3.978 14 C -0.123 4.123 15 C -0.141 4.141 16 C 0.098 3.902 17 C -0.462 4.462 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.814 5.814 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.204 4.204 26 C -0.086 4.086 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.393 0.607 35 H 0.391 0.609 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.277 0.723 39 H 0.095 0.905 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 4.503 17.255 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 H 0.116 0.884 4 C -0.028 4.028 5 O -0.296 6.296 6 C -0.043 4.043 7 C 0.030 3.970 8 H 0.123 0.877 9 N -0.404 5.404 10 C 0.395 3.605 11 O -0.453 6.453 12 N -0.312 5.312 13 C -0.071 4.071 14 C -0.143 4.143 15 C -0.161 4.161 16 C 0.096 3.904 17 C -0.493 4.493 18 H 0.093 0.907 19 C -0.145 4.145 20 N -0.441 5.441 21 Si 0.740 3.260 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.224 4.224 26 C -0.106 4.106 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.229 0.771 35 H 0.224 0.776 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.285 4.968 16.614 17.388 hybrid contribution -0.940 -0.303 -0.424 1.074 sum 0.345 4.665 16.190 16.852 Atomic orbital electron populations 1.21653 0.93450 1.01923 1.02820 1.23074 0.97265 1.00523 0.94495 0.88352 1.23717 0.84586 0.97477 0.96993 1.88887 1.28774 1.86526 1.25437 1.23750 0.99440 0.99329 0.81817 1.22040 0.87619 0.90896 0.96462 0.87677 1.45301 1.30960 1.51794 1.12300 1.16045 0.83431 0.79522 0.81489 1.90913 1.35437 1.61917 1.56988 1.42106 1.31322 1.46990 1.10739 1.17072 0.94296 1.13208 0.82493 1.20289 0.94125 1.04452 0.95483 1.21173 0.99599 1.03647 0.91643 1.17713 0.90716 0.89197 0.92809 1.19482 1.09270 1.27002 0.93506 0.90674 1.25865 0.93942 0.93393 1.01339 1.69768 1.09398 1.28136 1.36811 0.86205 0.79468 0.78657 0.81678 1.19572 1.20350 1.18754 1.20811 0.97471 1.09356 0.94763 1.20420 0.95712 0.99287 0.95207 0.92450 0.91890 0.91461 0.92137 0.88850 0.91717 0.88892 0.77094 0.77596 0.89198 0.85049 0.91227 0.88639 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.48 37.16 0.32 -0.63 16 2 C -0.13 -1.08 3.71 -88.42 -0.33 -1.41 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.05 0.40 7.19 38.40 0.28 0.67 16 5 O -0.38 -4.34 11.52 -35.23 -0.41 -4.74 16 6 C 0.03 0.41 7.50 37.73 0.28 0.69 16 7 C 0.14 1.53 3.26 -66.40 -0.22 1.32 16 8 H 0.11 1.38 7.61 -51.93 -0.40 0.98 16 9 N -0.74 -8.95 4.47 -57.19 -0.26 -9.21 16 10 C 0.69 11.99 8.39 -86.93 -0.73 11.26 16 11 O -0.58 -12.47 13.44 5.29 0.07 -12.40 16 12 N -0.67 -11.54 5.31 -14.10 -0.07 -11.61 16 13 C 0.02 0.49 6.31 -83.57 -0.53 -0.04 16 14 C -0.12 -2.80 9.90 -39.79 -0.39 -3.19 16 15 C -0.14 -3.62 8.61 -39.26 -0.34 -3.96 16 16 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 17 C -0.46 -12.41 9.02 -37.86 -0.34 -12.75 16 18 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 19 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 20 N -0.81 -21.29 10.59 55.54 0.59 -20.71 16 21 Si 0.91 19.16 29.56 -169.99 -5.03 14.14 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 C -0.20 -5.22 9.74 -39.26 -0.38 -5.60 16 26 C -0.09 -2.08 8.61 -39.79 -0.34 -2.42 16 27 H 0.06 0.34 6.28 -51.93 -0.33 0.02 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.44 8.02 -51.93 -0.42 0.03 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.81 7.93 -51.93 -0.41 0.39 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.39 3.58 6.39 -40.82 -0.26 3.32 16 35 H 0.39 5.23 8.83 -40.82 -0.36 4.87 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 37 H 0.13 3.49 6.13 -52.49 -0.32 3.17 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 40 H 0.11 2.61 6.22 -52.49 -0.33 2.28 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -31.24 328.30 -8.89 -40.13 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.32 Total: 11.79 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.41 Total: -12.34 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.26 Total: -41.52 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.33 Total: -17.14 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.24 -8.89 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925996166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.728 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds