Wall clock time and date at job start Tue Mar 31 2020 06:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.82977 * 2 1 4 4 C 1.55342 * 111.00850 * 123.79147 * 2 1 3 5 5 O 1.44375 * 103.49932 * 155.20353 * 4 2 1 6 6 C 1.43739 * 106.97917 * 319.90851 * 5 4 2 7 7 C 1.54096 * 107.29272 * 26.51271 * 6 5 4 8 8 H 1.08999 * 110.48801 * 116.78523 * 7 6 5 9 9 N 1.46504 * 110.48967 * 239.29132 * 7 6 5 10 10 C 1.34770 * 120.00470 * 271.75832 * 9 7 6 11 11 O 1.21580 * 119.99828 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00134 * 179.72293 * 10 9 7 13 13 C 1.39242 * 119.99854 * 175.98529 * 12 10 9 14 14 C 1.39483 * 119.83083 * 215.02085 * 13 12 10 15 15 C 1.36380 * 120.16567 * 179.71782 * 14 13 12 16 16 C 1.40861 * 119.82748 * 0.55682 * 15 14 13 17 17 C 1.41158 * 120.16234 * 179.74173 * 16 15 14 18 18 H 1.08001 * 120.00012 * 214.76257 * 17 16 15 19 19 C 1.39889 * 120.00402 * 34.76300 * 17 16 15 20 20 N 1.30885 * 119.99467 * 355.56261 * 19 17 16 21 21 Si 1.86796 * 120.00397 * 175.55633 * 19 17 16 22 22 H 1.48506 * 109.47041 * 90.00173 * 21 19 17 23 23 H 1.48499 * 109.47213 * 209.99876 * 21 19 17 24 24 H 1.48497 * 109.47476 * 330.00266 * 21 19 17 25 25 C 1.40867 * 119.67564 * 359.71960 * 16 15 14 26 26 C 1.36378 * 119.82871 * 359.97438 * 25 16 15 27 27 H 1.08992 * 109.47522 * 183.64644 * 1 2 3 28 28 H 1.09005 * 109.46727 * 303.64330 * 1 2 3 29 29 H 1.09001 * 109.47013 * 63.63843 * 1 2 3 30 30 H 1.08997 * 110.63979 * 36.68642 * 4 2 1 31 31 H 1.08998 * 110.58326 * 273.69740 * 4 2 1 32 32 H 1.09001 * 109.88081 * 267.08777 * 6 5 4 33 33 H 1.09003 * 110.00638 * 146.00908 * 6 5 4 34 34 H 0.96998 * 119.99497 * 91.75044 * 9 7 6 35 35 H 0.96997 * 119.99869 * 355.98004 * 12 10 9 36 36 H 1.08004 * 119.91858 * 359.97438 * 14 13 12 37 37 H 1.07995 * 120.08493 * 180.27449 * 15 14 13 38 38 H 0.96997 * 119.99806 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.08973 * 179.97438 * 25 16 15 40 40 H 1.08001 * 119.91691 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0869 -0.8065 1.2052 5 8 3.3975 -1.2167 0.7595 6 6 3.2733 -1.5881 -0.6235 7 6 2.0824 -0.8012 -1.2040 8 1 2.4186 -0.1252 -1.9902 9 7 1.0637 -1.7191 -1.7199 10 6 1.1333 -2.1565 -2.9928 11 8 2.0411 -1.7889 -3.7131 12 7 0.1993 -3.0053 -3.4656 13 6 0.2229 -3.3916 -4.8032 14 6 -0.9750 -3.6074 -5.4843 15 6 -0.9599 -3.9803 -6.7961 16 6 0.2698 -4.1588 -7.4596 17 6 0.2937 -4.5499 -8.8157 18 1 1.0765 -5.2008 -9.1763 19 6 -0.6965 -4.0946 -9.6927 20 7 -1.6930 -3.3775 -9.2389 21 14 -0.5965 -4.5098 -11.5112 22 1 -1.3077 -5.7882 -11.7669 23 1 -1.2298 -3.4243 -12.3023 24 1 0.8272 -4.6471 -11.9101 25 6 1.4755 -3.9445 -6.7634 26 6 1.4444 -3.5658 -5.4537 27 1 -0.3634 -1.0255 0.0654 28 1 -0.3633 0.5694 0.8556 29 1 -0.3633 0.4563 -0.9208 30 1 1.4611 -1.6756 1.4080 31 1 2.1629 -0.1724 2.0884 32 1 3.0849 -2.6587 -0.7044 33 1 4.1854 -1.3309 -1.1621 34 1 0.3393 -2.0121 -1.1453 35 1 -0.4893 -3.3471 -2.8742 36 1 -1.9169 -3.4749 -4.9729 37 1 -1.8882 -4.1428 -7.3234 38 1 -2.3798 -3.0621 -9.8469 39 1 2.4221 -4.0798 -7.2655 40 1 2.3679 -3.4007 -4.9186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925996166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:27 Heat of formation + Delta-G solvation = -67.421226 kcal Electronic energy + Delta-G solvation = -22595.102269 eV Core-core repulsion = 19180.908272 eV Total energy + Delta-G solvation = -3414.193997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.74689 -40.45094 -39.06367 -36.29192 -35.87017 -34.70560 -33.28130 -31.47355 -30.84138 -29.65685 -27.22546 -26.71516 -24.01303 -23.30393 -22.76196 -21.83284 -21.04024 -19.66123 -19.16341 -18.24813 -17.36915 -17.10426 -16.83303 -16.61435 -16.02626 -15.87228 -15.59059 -15.41325 -14.86906 -14.55823 -14.37994 -13.99560 -13.80481 -13.57664 -13.28538 -13.19313 -13.08289 -12.84014 -12.76009 -12.47095 -12.22009 -11.97261 -11.83054 -11.66660 -11.38969 -11.23800 -11.01661 -10.73753 -10.65602 -10.17526 -9.44503 -8.68034 -8.48411 -6.30769 0.85753 1.16322 1.40260 1.47263 1.54597 1.69219 2.16996 2.25726 2.82643 2.93441 3.33751 3.40371 3.70092 3.77907 3.82021 4.15106 4.22165 4.40801 4.44676 4.53867 4.64207 4.71882 4.74311 4.86493 4.94522 5.01463 5.11551 5.14785 5.16634 5.29626 5.34333 5.41988 5.46126 5.70486 5.81266 5.84953 6.04531 6.12449 6.25521 6.41923 6.70408 6.98928 7.02937 7.12473 7.63361 8.44230 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.002963 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.780765 B = 9446.224321 C = 9769.952760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 H 0.106 0.894 4 C 0.045 3.955 5 O -0.394 6.394 6 C 0.039 3.961 7 C 0.131 3.869 8 H 0.084 0.916 9 N -0.718 5.718 10 C 0.694 3.306 11 O -0.621 6.621 12 N -0.657 5.657 13 C 0.041 3.959 14 C -0.119 4.119 15 C -0.158 4.158 16 C 0.066 3.934 17 C -0.499 4.499 18 H 0.071 0.929 19 C 0.028 3.972 20 N -0.842 5.842 21 Si 0.987 3.013 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.264 1.264 25 C -0.220 4.220 26 C -0.098 4.098 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.412 0.588 35 H 0.414 0.586 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.284 0.716 39 H 0.094 0.906 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 5.055 19.126 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 H 0.124 0.876 4 C -0.031 4.031 5 O -0.313 6.313 6 C -0.039 4.039 7 C 0.025 3.975 8 H 0.102 0.898 9 N -0.377 5.377 10 C 0.394 3.606 11 O -0.501 6.501 12 N -0.305 5.305 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.178 4.178 16 C 0.064 3.936 17 C -0.530 4.530 18 H 0.089 0.911 19 C -0.184 4.184 20 N -0.470 5.470 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.188 1.188 25 C -0.240 4.240 26 C -0.118 4.118 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.251 0.749 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.018 5.520 18.584 19.387 hybrid contribution -0.511 -0.406 -0.777 1.014 sum -0.529 5.114 17.808 18.535 Atomic orbital electron populations 1.21667 0.92038 1.02863 1.03169 1.23056 0.98306 1.00297 0.92478 0.87567 1.23972 0.83274 0.98336 0.97481 1.88879 1.30890 1.86671 1.24865 1.23593 0.99198 0.98776 0.82372 1.22131 0.87629 0.90636 0.97096 0.89826 1.45038 1.31408 1.50794 1.10497 1.16199 0.82527 0.79216 0.82627 1.90895 1.37193 1.63351 1.58692 1.41861 1.32190 1.47171 1.09299 1.17079 0.93320 1.10583 0.84332 1.20532 0.95800 1.03067 0.94555 1.21162 0.98683 1.04948 0.92978 1.18017 0.91597 0.90536 0.93490 1.19705 1.10469 1.28508 0.94315 0.91092 1.26710 0.93145 0.92800 1.05734 1.69827 1.09968 1.28676 1.38535 0.85118 0.79378 0.78903 0.75744 1.18385 1.19421 1.18816 1.20922 0.97274 1.10150 0.95627 1.20521 0.96706 0.99660 0.94927 0.91430 0.89776 0.92693 0.90855 0.86624 0.92557 0.89847 0.74857 0.74856 0.85639 0.86280 0.90534 0.88811 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.48 71.98 0.61 -0.78 16 2 C -0.12 -1.63 3.71 -9.37 -0.03 -1.66 16 3 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.05 0.59 7.19 72.79 0.52 1.11 16 5 O -0.39 -8.36 11.52 -148.98 -1.72 -10.08 16 6 C 0.04 0.88 7.50 72.35 0.54 1.43 16 7 C 0.13 2.78 3.26 45.98 0.15 2.93 16 8 H 0.08 2.19 7.61 -2.39 -0.02 2.17 16 9 N -0.72 -15.79 4.47 -453.10 -2.03 -17.82 16 10 C 0.69 23.06 8.39 179.06 1.50 24.56 16 11 O -0.62 -26.97 13.44 -3.97 -0.05 -27.03 16 12 N -0.66 -21.44 5.31 -316.79 -1.68 -23.13 16 13 C 0.04 1.79 6.31 38.56 0.24 2.03 16 14 C -0.12 -5.30 9.90 22.14 0.22 -5.08 16 15 C -0.16 -8.24 8.61 22.48 0.19 -8.05 16 16 C 0.07 3.68 5.55 -21.28 -0.12 3.56 16 17 C -0.50 -27.79 9.02 23.39 0.21 -27.58 16 18 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 19 C 0.03 1.44 5.42 85.23 0.46 1.90 16 20 N -0.84 -44.73 10.59 21.82 0.23 -44.50 16 21 Si 0.99 39.59 29.56 68.60 2.03 41.62 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 C -0.22 -11.65 9.74 22.48 0.22 -11.43 16 26 C -0.10 -4.80 8.61 22.14 0.19 -4.61 16 27 H 0.07 0.53 6.28 -2.39 -0.02 0.51 16 28 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.79 8.02 -2.39 -0.02 0.77 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.36 7.93 -2.39 -0.02 1.34 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.41 6.12 6.39 -92.71 -0.59 5.53 16 35 H 0.41 9.70 8.83 -92.71 -0.82 8.89 16 36 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.12 6.48 6.13 -2.91 -0.02 6.46 16 38 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 39 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.11 5.25 6.22 -2.91 -0.02 5.23 16 Total: -1.00 -70.00 328.30 1.36 -68.64 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.33 Total: 33.96 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.92 Total: -21.67 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.48 Total: -85.45 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.77 Total: -37.10 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -70.00 1.36 -68.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925996166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.219 kcal (2) G-P(sol) polarization free energy of solvation -70.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds