Wall clock time and date at job start Tue Mar 31 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46822 * 2 1 4 4 C 1.50700 * 109.47348 * 239.99705 * 2 1 3 5 5 H 1.07997 * 120.00317 * 245.62390 * 4 2 1 6 6 C 1.37880 * 119.99840 * 65.63059 * 4 2 1 7 7 N 1.31510 * 119.99985 * 197.51088 * 6 4 2 8 8 Si 1.86805 * 120.00129 * 17.50740 * 6 4 2 9 9 H 1.48497 * 109.47073 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47126 * 300.00378 * 8 6 4 11 11 H 1.48501 * 109.47003 * 60.00063 * 8 6 4 12 12 N 1.46501 * 109.47268 * 119.99940 * 2 1 3 13 13 C 1.34778 * 119.99901 * 275.00711 * 12 2 1 14 14 O 1.21515 * 120.00314 * 359.97438 * 13 12 2 15 15 C 1.48160 * 120.00023 * 179.97438 * 13 12 2 16 16 C 1.39389 * 120.66619 * 359.97438 * 15 13 12 17 17 C 1.38862 * 118.61942 * 179.97438 * 16 15 13 18 18 O 1.35679 * 119.70110 * 180.17750 * 17 16 15 19 19 N 1.31841 * 120.59956 * 0.15123 * 17 16 15 20 20 C 1.32730 * 122.69463 * 359.92595 * 19 17 16 21 21 C 1.37468 * 120.23451 * 359.55386 * 20 19 17 22 22 C 1.50492 * 122.87910 * 180.44694 * 21 20 19 23 23 C 1.52767 * 110.63352 * 342.73053 * 22 21 20 24 24 C 1.53318 * 108.33809 * 50.65517 * 23 22 21 25 25 C 1.50759 * 117.46137 * 179.58852 * 20 19 17 26 26 H 1.09003 * 109.46882 * 186.34096 * 1 2 3 27 27 H 1.09002 * 109.47544 * 306.34237 * 1 2 3 28 28 H 1.08998 * 109.46939 * 66.34452 * 1 2 3 29 29 H 0.96994 * 120.00369 * 354.88368 * 7 6 4 30 30 H 0.96994 * 120.00239 * 94.99613 * 12 2 1 31 31 H 1.08002 * 120.69133 * 359.96878 * 16 15 13 32 32 H 0.96703 * 113.99872 * 89.99899 * 18 17 16 33 33 H 1.09002 * 109.39054 * 222.32644 * 22 21 20 34 34 H 1.09000 * 109.02669 * 102.90576 * 22 21 20 35 35 H 1.08995 * 109.69396 * 290.93963 * 23 22 21 36 36 H 1.09002 * 109.68666 * 170.36326 * 23 22 21 37 37 H 1.09009 * 109.64180 * 170.53515 * 24 23 22 38 38 H 1.09004 * 109.64466 * 49.91391 * 24 23 22 39 39 H 1.08999 * 109.25080 * 282.43413 * 25 20 19 40 40 H 1.08997 * 109.25077 * 41.89527 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5763 -1.6384 -1.1339 6 6 1.7977 -0.1756 -2.4794 7 7 1.9163 -0.9295 -3.5504 8 14 1.3111 1.6198 -2.6503 9 1 1.1169 1.9455 -4.0860 10 1 0.0452 1.8620 -1.9126 11 1 2.3838 2.4790 -2.0879 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8583 1.1609 2.4117 15 6 2.6403 -0.7168 3.5670 16 6 2.9749 -2.0691 3.5204 17 6 3.4335 -2.6811 4.6794 18 8 3.7689 -3.9957 4.6580 19 7 3.5464 -1.9964 5.8004 20 6 3.2372 -0.7086 5.8882 21 6 2.7862 -0.0281 4.7822 22 6 2.4284 1.4333 4.8118 23 6 2.2241 1.9085 6.2493 24 6 3.4390 1.4750 7.0779 25 6 3.4024 -0.0439 7.2312 26 1 -0.3633 -1.0214 0.1135 27 1 -0.3634 0.6090 0.8278 28 1 -0.3633 0.4123 -0.9413 29 1 2.2402 -1.8401 -3.4691 30 1 2.2490 -1.6317 1.1527 31 1 2.8795 -2.6292 2.6020 32 1 4.6957 -4.1616 4.4372 33 1 1.5100 1.5926 4.2467 34 1 3.2355 2.0062 4.3552 35 1 1.3201 1.4586 6.6599 36 1 2.1354 2.9947 6.2679 37 1 3.3980 1.9436 8.0613 38 1 4.3554 1.7697 6.5664 39 1 2.5667 -0.3202 7.8741 40 1 4.3333 -0.3812 7.6870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931155331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:34 Heat of formation + Delta-G solvation = -54.943787 kcal Electronic energy + Delta-G solvation = -23210.946004 eV Core-core repulsion = 19797.293070 eV Total energy + Delta-G solvation = -3413.652934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13004 -39.01227 -37.99670 -35.74081 -35.17268 -33.38061 -32.52500 -30.43099 -29.74095 -29.16868 -25.14406 -24.67272 -23.44153 -23.30721 -21.12606 -20.32146 -19.53329 -18.75592 -17.74111 -17.11350 -16.56274 -15.96022 -15.40227 -15.11235 -14.78595 -14.36002 -14.17579 -13.89505 -13.77654 -13.39695 -13.21086 -12.90465 -12.76363 -12.36952 -12.23294 -11.93872 -11.78635 -11.67165 -11.51907 -10.98920 -10.90874 -10.76357 -10.54294 -10.13887 -9.95710 -9.81708 -9.76041 -9.17113 -9.01099 -8.69588 -8.39202 -8.31537 -6.65319 -4.29262 0.69271 0.87962 3.00404 3.33477 3.39768 3.41214 3.53409 3.66335 3.78137 4.28252 4.36032 4.63500 4.70372 4.75763 4.82451 4.94925 5.05863 5.10792 5.29754 5.39624 5.47962 5.48594 5.58539 5.72757 5.79889 5.84572 5.95382 6.09921 6.23546 6.30248 6.31221 6.44493 6.55946 6.59407 6.86334 7.16867 7.26133 7.33983 7.53524 7.77624 8.15616 8.28877 8.56950 8.78134 9.39960 10.75790 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.004528 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.111861 B = 6182.942689 C = 7289.018122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.242 3.758 3 H 0.044 0.956 4 C -0.621 4.621 5 H 0.062 0.938 6 C 0.040 3.960 7 N -0.895 5.895 8 Si 1.042 2.958 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.690 5.690 13 C 0.543 3.457 14 O -0.537 6.537 15 C -0.070 4.070 16 C -0.156 4.156 17 C 0.305 3.695 18 O -0.480 6.480 19 N -0.497 5.497 20 C 0.147 3.853 21 C -0.079 4.079 22 C -0.083 4.083 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.065 4.065 26 H 0.044 0.956 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.269 0.731 30 H 0.393 0.607 31 H 0.146 0.854 32 H 0.399 0.601 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 1.186 19.236 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.139 3.861 3 H 0.062 0.938 4 C -0.658 4.658 5 H 0.080 0.920 6 C -0.167 4.167 7 N -0.528 5.528 8 Si 0.869 3.131 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.206 1.206 12 N -0.337 5.337 13 C 0.328 3.672 14 O -0.416 6.416 15 C -0.081 4.081 16 C -0.178 4.178 17 C 0.124 3.876 18 O -0.287 6.287 19 N -0.216 5.216 20 C 0.011 3.989 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.162 4.162 24 C -0.159 4.159 25 C -0.102 4.102 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.164 0.836 32 H 0.256 0.744 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.454 2.584 18.919 19.251 hybrid contribution 0.895 -1.715 0.114 1.938 sum 3.349 0.869 19.033 19.345 Atomic orbital electron populations 1.22509 0.98600 1.00278 1.00576 1.19093 0.90746 0.94252 0.82049 0.93813 1.22048 1.42107 1.10639 0.91040 0.92036 1.25694 0.94169 1.05151 0.91659 1.70876 1.40637 1.09889 1.31384 0.84080 0.77639 0.75000 0.76347 1.20805 1.19690 1.20570 1.46297 1.63913 1.13852 1.09651 1.18108 0.79151 0.86790 0.83117 1.90670 1.51505 1.15228 1.84222 1.20562 0.98937 0.93369 0.95217 1.22339 1.01564 0.94372 0.99524 1.18767 0.96668 0.84350 0.87803 1.84806 1.33104 1.18313 1.92451 1.66791 1.17244 1.08637 1.28954 1.20729 0.94976 0.87719 0.95445 1.20635 0.97489 0.98269 0.91783 1.20773 1.04978 0.89404 0.96841 1.21685 0.97988 1.01211 0.95339 1.21612 0.99319 0.94216 1.00733 1.20370 1.03523 0.94647 0.91689 0.93649 0.95063 0.91699 0.92041 0.77227 0.83631 0.74351 0.87082 0.89858 0.91716 0.90977 0.90891 0.91359 0.89741 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.16 37.16 0.34 -3.22 16 2 C 0.24 5.66 2.14 -69.08 -0.15 5.51 16 3 H 0.04 1.10 6.23 -51.93 -0.32 0.78 16 4 C -0.62 -16.42 9.00 -34.44 -0.31 -16.73 16 5 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 6 C 0.04 1.11 5.29 -17.82 -0.09 1.01 16 7 N -0.90 -26.20 13.69 55.43 0.76 -25.44 16 8 Si 1.04 24.50 26.29 -169.99 -4.47 20.03 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.27 -5.94 5.76 56.52 0.33 -5.61 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 N -0.69 -13.75 5.03 -55.78 -0.28 -14.03 16 13 C 0.54 10.29 7.71 -12.19 -0.09 10.20 16 14 O -0.54 -11.21 12.87 5.35 0.07 -11.14 16 15 C -0.07 -1.11 5.91 -104.57 -0.62 -1.73 16 16 C -0.16 -2.22 9.55 -38.92 -0.37 -2.59 16 17 C 0.30 4.22 7.75 -17.32 -0.13 4.08 16 18 O -0.48 -5.65 13.56 -18.74 -0.25 -5.90 16 19 N -0.50 -7.10 10.18 -9.62 -0.10 -7.20 16 20 C 0.15 1.96 6.62 -82.46 -0.55 1.41 16 21 C -0.08 -1.14 5.77 -104.18 -0.60 -1.74 16 22 C -0.08 -1.11 4.29 -28.10 -0.12 -1.24 16 23 C -0.12 -1.24 5.99 -26.69 -0.16 -1.40 16 24 C -0.12 -1.04 5.97 -26.72 -0.16 -1.20 16 25 C -0.06 -0.64 5.91 -28.00 -0.17 -0.80 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.47 4.88 -51.93 -0.25 1.22 16 29 H 0.27 7.80 8.73 -40.82 -0.36 7.45 16 30 H 0.39 7.04 6.64 -40.82 -0.27 6.77 16 31 H 0.15 1.86 6.51 -52.49 -0.34 1.52 16 32 H 0.40 2.66 9.06 45.56 0.41 3.07 16 33 H 0.11 1.74 5.91 -51.93 -0.31 1.43 16 34 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 35 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -31.62 321.74 -7.14 -38.76 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -4.53 Total: 8.52 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.18 Total: -8.44 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.38 Total: -46.66 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.19 Total: -17.04 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.47 Total: 20.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.62 -7.14 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.188 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds