Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46822 * 2 1 4 4 C 1.50700 * 109.47348 * 239.99705 * 2 1 3 5 5 H 1.07997 * 120.00317 * 245.62390 * 4 2 1 6 6 C 1.37880 * 119.99840 * 65.63059 * 4 2 1 7 7 N 1.31510 * 119.99985 * 197.51088 * 6 4 2 8 8 Si 1.86805 * 120.00129 * 17.50740 * 6 4 2 9 9 H 1.48497 * 109.47073 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47126 * 300.00378 * 8 6 4 11 11 H 1.48501 * 109.47003 * 60.00063 * 8 6 4 12 12 N 1.46501 * 109.47268 * 119.99940 * 2 1 3 13 13 C 1.34778 * 119.99901 * 275.00711 * 12 2 1 14 14 O 1.21515 * 120.00314 * 359.97438 * 13 12 2 15 15 C 1.48160 * 120.00023 * 179.97438 * 13 12 2 16 16 C 1.39389 * 120.66619 * 359.97438 * 15 13 12 17 17 C 1.38862 * 118.61942 * 179.97438 * 16 15 13 18 18 O 1.35679 * 119.70110 * 180.17750 * 17 16 15 19 19 N 1.31841 * 120.59956 * 0.15123 * 17 16 15 20 20 C 1.32730 * 122.69463 * 359.92595 * 19 17 16 21 21 C 1.37468 * 120.23451 * 359.55386 * 20 19 17 22 22 C 1.50492 * 122.87910 * 180.44694 * 21 20 19 23 23 C 1.52767 * 110.63352 * 342.73053 * 22 21 20 24 24 C 1.53318 * 108.33809 * 50.65517 * 23 22 21 25 25 C 1.50759 * 117.46137 * 179.58852 * 20 19 17 26 26 H 1.09003 * 109.46882 * 186.34096 * 1 2 3 27 27 H 1.09002 * 109.47544 * 306.34237 * 1 2 3 28 28 H 1.08998 * 109.46939 * 66.34452 * 1 2 3 29 29 H 0.96994 * 120.00369 * 354.88368 * 7 6 4 30 30 H 0.96994 * 120.00239 * 94.99613 * 12 2 1 31 31 H 1.08002 * 120.69133 * 359.96878 * 16 15 13 32 32 H 0.96703 * 113.99872 * 89.99899 * 18 17 16 33 33 H 1.09002 * 109.39054 * 222.32644 * 22 21 20 34 34 H 1.09000 * 109.02669 * 102.90576 * 22 21 20 35 35 H 1.08995 * 109.69396 * 290.93963 * 23 22 21 36 36 H 1.09002 * 109.68666 * 170.36326 * 23 22 21 37 37 H 1.09009 * 109.64180 * 170.53515 * 24 23 22 38 38 H 1.09004 * 109.64466 * 49.91391 * 24 23 22 39 39 H 1.08999 * 109.25080 * 282.43413 * 25 20 19 40 40 H 1.08997 * 109.25077 * 41.89527 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5763 -1.6384 -1.1339 6 6 1.7977 -0.1756 -2.4794 7 7 1.9163 -0.9295 -3.5504 8 14 1.3111 1.6198 -2.6503 9 1 1.1169 1.9455 -4.0860 10 1 0.0452 1.8620 -1.9126 11 1 2.3838 2.4790 -2.0879 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8583 1.1609 2.4117 15 6 2.6403 -0.7168 3.5670 16 6 2.9749 -2.0691 3.5204 17 6 3.4335 -2.6811 4.6794 18 8 3.7689 -3.9957 4.6580 19 7 3.5464 -1.9964 5.8004 20 6 3.2372 -0.7086 5.8882 21 6 2.7862 -0.0281 4.7822 22 6 2.4284 1.4333 4.8118 23 6 2.2241 1.9085 6.2493 24 6 3.4390 1.4750 7.0779 25 6 3.4024 -0.0439 7.2312 26 1 -0.3633 -1.0214 0.1135 27 1 -0.3634 0.6090 0.8278 28 1 -0.3633 0.4123 -0.9413 29 1 2.2402 -1.8401 -3.4691 30 1 2.2490 -1.6317 1.1527 31 1 2.8795 -2.6292 2.6020 32 1 4.6957 -4.1616 4.4372 33 1 1.5100 1.5926 4.2467 34 1 3.2355 2.0062 4.3552 35 1 1.3201 1.4586 6.6599 36 1 2.1354 2.9947 6.2679 37 1 3.3980 1.9436 8.0613 38 1 4.3554 1.7697 6.5664 39 1 2.5667 -0.3202 7.8741 40 1 4.3333 -0.3812 7.6870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931155331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = -79.581876 kcal Electronic energy + Delta-G solvation = -23212.014392 eV Core-core repulsion = 19797.293070 eV Total energy + Delta-G solvation = -3414.721322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26273 -40.46150 -38.96145 -36.98245 -36.62169 -34.72540 -34.30575 -31.86598 -30.77963 -30.41250 -26.96676 -26.07012 -24.44947 -24.32531 -22.65243 -21.69578 -20.78975 -20.05880 -19.38616 -18.27033 -17.96838 -17.01393 -16.85821 -16.37733 -16.19701 -15.61009 -15.30672 -15.20208 -14.79142 -14.69948 -14.64951 -14.44445 -14.22876 -13.87144 -13.51605 -13.38808 -13.28341 -12.87660 -12.58914 -12.44408 -12.00781 -11.88954 -11.76173 -11.65607 -11.57673 -11.23512 -11.15081 -10.92089 -10.49654 -10.28448 -10.03398 -9.70578 -8.83604 -6.48126 -0.50364 -0.17652 1.45507 1.50533 1.69283 1.72922 2.14597 2.38122 2.40757 2.60869 2.98713 3.30015 3.49604 3.64438 3.73822 3.98041 4.04905 4.11767 4.33747 4.39802 4.46124 4.49601 4.62693 4.67776 4.72392 4.74851 4.76934 5.00232 5.02498 5.06128 5.15003 5.24718 5.34959 5.39780 5.45208 5.46830 5.56091 5.59820 5.96749 6.47316 6.50582 6.63735 6.75147 7.13719 7.29481 8.56750 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.004528 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.111861 B = 6182.942689 C = 7289.018122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.245 3.755 3 H 0.031 0.969 4 C -0.617 4.617 5 H 0.040 0.960 6 C -0.003 4.003 7 N -0.925 5.925 8 Si 1.073 2.927 9 H -0.282 1.282 10 H -0.245 1.245 11 H -0.272 1.272 12 N -0.693 5.693 13 C 0.545 3.455 14 O -0.558 6.558 15 C -0.086 4.086 16 C -0.158 4.158 17 C 0.307 3.693 18 O -0.484 6.484 19 N -0.505 5.505 20 C 0.150 3.850 21 C -0.088 4.088 22 C -0.080 4.080 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.064 4.064 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.258 0.742 30 H 0.402 0.598 31 H 0.154 0.846 32 H 0.421 0.579 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.460 1.820 21.874 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.141 3.859 3 H 0.048 0.952 4 C -0.655 4.655 5 H 0.058 0.942 6 C -0.204 4.204 7 N -0.560 5.560 8 Si 0.895 3.105 9 H -0.208 1.208 10 H -0.170 1.170 11 H -0.197 1.197 12 N -0.342 5.342 13 C 0.332 3.668 14 O -0.439 6.439 15 C -0.097 4.097 16 C -0.180 4.180 17 C 0.127 3.873 18 O -0.294 6.294 19 N -0.225 5.225 20 C 0.014 3.986 21 C -0.091 4.091 22 C -0.117 4.117 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.102 4.102 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.238 0.762 31 H 0.172 0.828 32 H 0.283 0.717 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.531 3.184 21.584 21.964 hybrid contribution 0.956 -2.016 -0.632 2.319 sum 3.486 1.168 20.952 21.272 Atomic orbital electron populations 1.22392 0.97324 1.00842 1.00728 1.18820 0.91618 0.93291 0.82197 0.95169 1.22216 1.41026 1.09755 0.92461 0.94202 1.26856 0.94001 1.07952 0.91628 1.70982 1.42955 1.09699 1.32355 0.83693 0.78889 0.71242 0.76702 1.20787 1.16959 1.19707 1.46113 1.64575 1.14270 1.09247 1.18483 0.78304 0.86557 0.83485 1.90663 1.52240 1.16258 1.84711 1.20357 1.00748 0.94150 0.94443 1.22404 1.01511 0.93812 1.00291 1.18840 0.96058 0.84893 0.87514 1.84756 1.35219 1.17007 1.92421 1.66939 1.17505 1.09092 1.28995 1.21292 0.93416 0.87436 0.96440 1.20830 0.97759 0.98797 0.91684 1.20688 1.03134 0.88909 0.99012 1.21676 0.98984 1.02041 0.93040 1.21610 0.98286 0.93377 1.01918 1.20532 1.04669 0.95202 0.89759 0.93141 0.93924 0.92208 0.93246 0.76246 0.82800 0.71732 0.89691 0.90942 0.91282 0.89633 0.87935 0.91629 0.88358 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.68 9.16 71.98 0.66 -6.02 16 2 C 0.24 11.44 2.14 44.24 0.09 11.54 16 3 H 0.03 1.51 6.23 -2.39 -0.01 1.50 16 4 C -0.62 -33.04 9.00 25.60 0.23 -32.81 16 5 H 0.04 2.26 7.96 -2.91 -0.02 2.24 16 6 C 0.00 -0.18 5.29 84.66 0.45 0.26 16 7 N -0.93 -55.17 13.69 21.45 0.29 -54.87 16 8 Si 1.07 49.01 26.29 68.60 1.80 50.82 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.25 -10.13 5.76 99.48 0.57 -9.56 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.69 -27.71 5.03 -448.68 -2.25 -29.96 16 13 C 0.54 20.68 7.71 86.88 0.67 21.35 16 14 O -0.56 -23.47 12.87 -3.76 -0.05 -23.52 16 15 C -0.09 -2.72 5.91 -19.83 -0.12 -2.83 16 16 C -0.16 -4.37 9.55 22.70 0.22 -4.16 16 17 C 0.31 8.03 7.75 84.84 0.66 8.68 16 18 O -0.48 -10.43 13.56 -89.97 -1.22 -11.65 16 19 N -0.51 -13.42 10.18 -297.41 -3.03 -16.45 16 20 C 0.15 3.69 6.62 42.26 0.28 3.97 16 21 C -0.09 -2.46 5.77 -19.58 -0.11 -2.57 16 22 C -0.08 -2.10 4.29 29.70 0.13 -1.98 16 23 C -0.12 -2.12 5.99 30.62 0.18 -1.94 16 24 C -0.11 -1.59 5.97 30.60 0.18 -1.40 16 25 C -0.06 -1.06 5.91 29.77 0.18 -0.88 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 2.62 4.88 -2.39 -0.01 2.61 16 29 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 30 H 0.40 14.48 6.64 -92.71 -0.62 13.86 16 31 H 0.15 3.85 6.51 -2.91 -0.02 3.83 16 32 H 0.42 4.70 9.06 -74.06 -0.67 4.03 16 33 H 0.08 2.69 5.91 -2.39 -0.01 2.67 16 34 H 0.07 2.02 8.11 -2.39 -0.02 2.00 16 35 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -68.07 321.74 -1.12 -69.20 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.37 Total: 25.24 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 3.70 Total: -8.80 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -4.99 Total: -101.29 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.27 Total: -35.17 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 1.80 Total: 50.82 kcal Total: -68.07 -1.12 -69.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.384 kcal (2) G-P(sol) polarization free energy of solvation -68.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds