Wall clock time and date at job start Tue Mar 31 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21520 * 119.99606 * 0.02562 * 13 12 2 15 15 C 1.48159 * 120.00090 * 180.02562 * 13 12 2 16 16 C 1.39383 * 120.66231 * 359.97438 * 15 13 12 17 17 C 1.38867 * 118.61437 * 180.02562 * 16 15 13 18 18 O 1.35686 * 119.70037 * 180.15818 * 17 16 15 19 19 N 1.31837 * 120.60503 * 0.13484 * 17 16 15 20 20 C 1.32737 * 122.68971 * 359.94239 * 19 17 16 21 21 C 1.37463 * 120.23545 * 359.53409 * 20 19 17 22 22 C 1.50490 * 122.87908 * 180.42169 * 21 20 19 23 23 C 1.52761 * 110.64205 * 342.77320 * 22 21 20 24 24 C 1.53327 * 108.33774 * 50.63768 * 23 22 21 25 25 C 1.50759 * 117.45901 * 179.59119 * 20 19 17 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 31 31 H 1.08004 * 120.69731 * 359.97438 * 16 15 13 32 32 H 0.96703 * 113.99876 * 89.99816 * 18 17 16 33 33 H 1.09001 * 109.40470 * 222.35648 * 22 21 20 34 34 H 1.08996 * 109.00661 * 102.94550 * 22 21 20 35 35 H 1.09003 * 109.69148 * 290.92746 * 23 22 21 36 36 H 1.08998 * 109.69369 * 170.34493 * 23 22 21 37 37 H 1.08997 * 109.64315 * 170.54605 * 24 23 22 38 38 H 1.08997 * 109.64015 * 49.90750 * 24 23 22 39 39 H 1.08999 * 109.24826 * 282.43532 * 25 20 19 40 40 H 1.08998 * 109.25236 * 41.89982 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8585 1.1609 -2.4115 15 6 2.6406 -0.7169 -3.5669 16 6 2.9761 -2.0689 -3.5199 17 6 3.4346 -2.6810 -4.6790 18 8 3.7644 -3.9970 -4.6590 19 7 3.5521 -1.9953 -5.7988 20 6 3.2452 -0.7068 -5.8860 21 6 2.7741 -0.0314 -4.7853 22 6 2.3996 1.4257 -4.8194 23 6 2.9996 2.1073 -6.0479 24 6 2.6470 1.2713 -7.2838 25 6 3.4335 -0.0363 -7.2231 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7081 1.1610 3.4844 30 1 2.2490 -1.6317 -1.1525 31 1 2.8821 -2.6287 -2.6011 32 1 3.0301 -4.5898 -4.8699 33 1 2.7703 1.9161 -3.9193 34 1 1.3137 1.5124 -4.8546 35 1 4.0828 2.1676 -5.9421 36 1 2.5838 3.1095 -6.1516 37 1 2.9171 1.8196 -8.1863 38 1 1.5784 1.0562 -7.2880 39 1 4.4924 0.1739 -7.3737 40 1 3.0836 -0.7024 -8.0117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931155332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:36 Heat of formation + Delta-G solvation = -55.331644 kcal Electronic energy + Delta-G solvation = -23133.742350 eV Core-core repulsion = 19720.072597 eV Total energy + Delta-G solvation = -3413.669753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04227 -38.84755 -37.92396 -35.67157 -34.99143 -33.28380 -32.45545 -30.13853 -29.64203 -28.68299 -25.34990 -24.76381 -23.36805 -23.24404 -21.19385 -20.31319 -19.38889 -18.65401 -17.29119 -16.94723 -15.97944 -15.83210 -15.28727 -15.11282 -14.63782 -14.28759 -14.23715 -13.97201 -13.83130 -13.37887 -13.06877 -12.78434 -12.49919 -12.29011 -11.88398 -11.77954 -11.61070 -11.18176 -11.03882 -10.93504 -10.85160 -10.77319 -10.69394 -10.35732 -10.29031 -9.84166 -9.67557 -9.13667 -8.87800 -8.63985 -8.59881 -8.03508 -6.18286 -4.28212 0.78530 0.95124 3.10779 3.22652 3.28089 3.29189 3.49636 3.78849 3.89820 4.30569 4.35270 4.72358 4.78521 4.82628 4.89187 5.04095 5.13729 5.15781 5.37444 5.47433 5.54851 5.56442 5.65332 5.80459 5.87069 5.91161 6.02364 6.18501 6.30936 6.39033 6.63312 6.74774 6.87807 7.05117 7.31264 7.38791 7.45036 7.61077 7.81952 7.84249 8.06403 8.49594 8.67059 8.92332 9.39223 10.87593 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.004202 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.252601 B = 6661.359784 C = 7684.851493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.696 5.696 13 C 0.542 3.458 14 O -0.535 6.535 15 C -0.069 4.069 16 C -0.157 4.157 17 C 0.303 3.697 18 O -0.480 6.480 19 N -0.498 5.498 20 C 0.146 3.854 21 C -0.079 4.079 22 C -0.083 4.083 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.064 4.064 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.092 0.908 29 H 0.266 0.734 30 H 0.389 0.611 31 H 0.146 0.854 32 H 0.398 0.602 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 -3.443 -16.920 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.343 5.343 13 C 0.326 3.674 14 O -0.414 6.414 15 C -0.080 4.080 16 C -0.179 4.179 17 C 0.122 3.878 18 O -0.287 6.287 19 N -0.218 5.218 20 C 0.010 3.990 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.162 4.162 24 C -0.159 4.159 25 C -0.102 4.102 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.222 0.778 31 H 0.164 0.836 32 H 0.255 0.745 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.753 -2.747 -17.280 17.712 hybrid contribution -0.263 -1.104 1.615 1.973 sum 2.490 -3.851 -15.665 16.323 Atomic orbital electron populations 1.22084 0.98169 0.99250 1.01065 1.18834 0.91180 0.94072 0.79601 0.93022 1.21155 1.32776 1.13399 0.90252 0.92076 1.24868 0.94698 0.94914 0.99052 1.69881 1.35608 1.22361 1.24125 0.86490 0.79228 0.79599 0.81702 1.20113 1.21063 1.20113 1.46549 1.63846 1.13636 1.10304 1.18062 0.79422 0.86818 0.83064 1.90681 1.50908 1.15170 1.84656 1.20652 0.98819 0.93336 0.95145 1.22334 1.00148 0.95197 1.00177 1.18774 0.94957 0.85765 0.88255 1.84813 1.39955 1.12381 1.91523 1.66781 1.16294 1.09435 1.29253 1.20717 0.95030 0.87884 0.95360 1.20639 0.97935 0.98088 0.91524 1.20769 1.01709 0.89446 1.00059 1.21689 1.01150 0.99036 0.94369 1.21610 1.00411 0.95127 0.98705 1.20364 1.01645 0.96128 0.92055 0.95402 0.96541 0.88947 0.92421 0.77752 0.83610 0.74494 0.86979 0.89925 0.91715 0.91002 0.90954 0.91399 0.89785 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.55 2.56 -69.08 -0.18 6.37 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.95 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.34 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.70 -14.24 5.03 -55.77 -0.28 -14.52 16 13 C 0.54 10.69 7.71 -12.18 -0.09 10.59 16 14 O -0.53 -11.85 12.87 5.35 0.07 -11.78 16 15 C -0.07 -1.12 5.91 -104.57 -0.62 -1.74 16 16 C -0.16 -2.26 9.55 -38.92 -0.37 -2.63 16 17 C 0.30 4.26 7.75 -17.32 -0.13 4.12 16 18 O -0.48 -5.68 13.56 -18.76 -0.25 -5.94 16 19 N -0.50 -7.27 10.18 -9.61 -0.10 -7.37 16 20 C 0.15 2.00 6.62 -82.45 -0.55 1.45 16 21 C -0.08 -1.19 5.77 -104.18 -0.60 -1.79 16 22 C -0.08 -1.17 4.29 -28.11 -0.12 -1.29 16 23 C -0.12 -1.33 5.99 -26.68 -0.16 -1.49 16 24 C -0.12 -1.09 5.97 -26.71 -0.16 -1.25 16 25 C -0.06 -0.66 5.91 -28.00 -0.17 -0.83 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.95 6.66 -40.82 -0.27 6.67 16 31 H 0.15 1.86 6.51 -52.48 -0.34 1.52 16 32 H 0.40 2.62 9.06 45.56 0.41 3.03 16 33 H 0.11 1.88 5.91 -51.93 -0.31 1.57 16 34 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 35 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -30.80 326.12 -7.80 -38.60 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.56 Total: 8.73 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -3.20 Total: -4.23 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.25 Total: -45.60 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.19 Total: -17.72 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.80 -7.80 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.732 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds