Wall clock time and date at job start Tue Mar 31 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21520 * 119.99606 * 0.02562 * 13 12 2 15 15 C 1.48159 * 120.00090 * 180.02562 * 13 12 2 16 16 C 1.39383 * 120.66231 * 359.97438 * 15 13 12 17 17 C 1.38867 * 118.61437 * 180.02562 * 16 15 13 18 18 O 1.35686 * 119.70037 * 180.15818 * 17 16 15 19 19 N 1.31837 * 120.60503 * 0.13484 * 17 16 15 20 20 C 1.32737 * 122.68971 * 359.94239 * 19 17 16 21 21 C 1.37463 * 120.23545 * 359.53409 * 20 19 17 22 22 C 1.50490 * 122.87908 * 180.42169 * 21 20 19 23 23 C 1.52761 * 110.64205 * 342.77320 * 22 21 20 24 24 C 1.53327 * 108.33774 * 50.63768 * 23 22 21 25 25 C 1.50759 * 117.45901 * 179.59119 * 20 19 17 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 31 31 H 1.08004 * 120.69731 * 359.97438 * 16 15 13 32 32 H 0.96703 * 113.99876 * 89.99816 * 18 17 16 33 33 H 1.09001 * 109.40470 * 222.35648 * 22 21 20 34 34 H 1.08996 * 109.00661 * 102.94550 * 22 21 20 35 35 H 1.09003 * 109.69148 * 290.92746 * 23 22 21 36 36 H 1.08998 * 109.69369 * 170.34493 * 23 22 21 37 37 H 1.08997 * 109.64315 * 170.54605 * 24 23 22 38 38 H 1.08997 * 109.64015 * 49.90750 * 24 23 22 39 39 H 1.08999 * 109.24826 * 282.43532 * 25 20 19 40 40 H 1.08998 * 109.25236 * 41.89982 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8585 1.1609 -2.4115 15 6 2.6406 -0.7169 -3.5669 16 6 2.9761 -2.0689 -3.5199 17 6 3.4346 -2.6810 -4.6790 18 8 3.7644 -3.9970 -4.6590 19 7 3.5521 -1.9953 -5.7988 20 6 3.2452 -0.7068 -5.8860 21 6 2.7741 -0.0314 -4.7853 22 6 2.3996 1.4257 -4.8194 23 6 2.9996 2.1073 -6.0479 24 6 2.6470 1.2713 -7.2838 25 6 3.4335 -0.0363 -7.2231 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7081 1.1610 3.4844 30 1 2.2490 -1.6317 -1.1525 31 1 2.8821 -2.6287 -2.6011 32 1 3.0301 -4.5898 -4.8699 33 1 2.7703 1.9161 -3.9193 34 1 1.3137 1.5124 -4.8546 35 1 4.0828 2.1676 -5.9421 36 1 2.5838 3.1095 -6.1516 37 1 2.9171 1.8196 -8.1863 38 1 1.5784 1.0562 -7.2880 39 1 4.4924 0.1739 -7.3737 40 1 3.0836 -0.7024 -8.0117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931155332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:36 Heat of formation + Delta-G solvation = -78.431308 kcal Electronic energy + Delta-G solvation = -23134.744027 eV Core-core repulsion = 19720.072597 eV Total energy + Delta-G solvation = -3414.671430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21240 -40.36416 -38.92130 -36.87601 -36.58270 -34.66285 -34.16046 -31.45475 -30.69967 -30.22570 -27.37519 -26.05431 -24.43956 -24.30158 -22.80971 -21.67631 -20.69734 -19.82009 -18.75063 -18.19416 -17.56676 -17.04811 -16.91131 -16.37411 -16.19402 -15.73864 -15.36390 -15.19475 -14.77764 -14.68608 -14.40577 -14.26233 -13.89431 -13.68073 -13.34325 -12.98718 -12.89329 -12.83534 -12.75397 -12.56889 -12.30385 -12.18491 -11.79898 -11.74754 -11.56328 -11.16892 -11.13723 -10.87475 -10.62434 -10.23407 -9.86414 -9.65575 -8.19900 -6.37671 -0.45202 -0.13508 1.44666 1.46214 1.54078 1.80097 2.20363 2.40950 2.47581 2.65075 3.10834 3.34516 3.57136 3.68313 3.78226 4.01332 4.05546 4.15505 4.38205 4.43844 4.51929 4.63502 4.71022 4.77478 4.80586 4.88858 5.03318 5.04188 5.05852 5.16322 5.25888 5.33875 5.40126 5.45582 5.50909 5.59085 5.63541 5.84324 6.05502 6.55656 6.67267 6.79087 6.79512 7.23637 7.39198 8.86099 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.004202 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.252601 B = 6661.359784 C = 7684.851493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H 0.005 0.995 4 C -0.551 4.551 5 H 0.072 0.928 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.264 1.264 12 N -0.694 5.694 13 C 0.540 3.460 14 O -0.566 6.566 15 C -0.085 4.085 16 C -0.156 4.156 17 C 0.309 3.691 18 O -0.482 6.482 19 N -0.505 5.505 20 C 0.150 3.850 21 C -0.090 4.090 22 C -0.079 4.079 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.064 4.064 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.069 0.931 29 H 0.267 0.733 30 H 0.403 0.597 31 H 0.160 0.840 32 H 0.422 0.578 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -5.186 -18.525 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.023 0.977 4 C -0.589 4.589 5 H 0.090 0.910 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.343 5.343 13 C 0.327 3.673 14 O -0.447 6.447 15 C -0.096 4.096 16 C -0.177 4.177 17 C 0.128 3.872 18 O -0.293 6.293 19 N -0.225 5.225 20 C 0.014 3.986 21 C -0.093 4.093 22 C -0.117 4.117 23 C -0.158 4.158 24 C -0.151 4.151 25 C -0.101 4.101 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.239 0.761 31 H 0.177 0.823 32 H 0.283 0.717 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.661 -4.540 -18.914 19.793 hybrid contribution -0.533 -0.577 2.049 2.195 sum 3.128 -5.117 -16.865 17.899 Atomic orbital electron populations 1.21899 0.97904 0.99575 0.99838 1.18435 0.91342 0.92101 0.81257 0.97690 1.21483 1.32929 1.13741 0.90774 0.90986 1.25748 0.94758 0.95528 1.02172 1.70028 1.36684 1.23767 1.24783 0.85413 0.78602 0.78770 0.77661 1.19726 1.21054 1.18855 1.46266 1.64294 1.14200 1.09542 1.18555 0.78500 0.86530 0.83703 1.90675 1.52007 1.16698 1.85304 1.20389 1.00773 0.94316 0.94131 1.22424 0.99876 0.94298 1.01146 1.18842 0.93882 0.86621 0.87856 1.84764 1.41335 1.11608 1.91555 1.66937 1.16518 1.09735 1.29353 1.21253 0.93446 0.87654 0.96275 1.20802 0.98457 0.98428 0.91641 1.20645 1.01062 0.89385 1.00583 1.21679 1.01091 0.99597 0.93433 1.21602 1.00193 0.94443 0.98839 1.20523 1.02722 0.96612 0.90243 0.94111 0.96641 0.91208 0.92427 0.76121 0.82261 0.71689 0.90315 0.91093 0.91405 0.89819 0.87908 0.91550 0.88454 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.26 71.98 0.67 -5.98 16 2 C 0.27 13.91 2.56 44.25 0.11 14.02 16 3 H 0.01 0.31 7.58 -2.39 -0.02 0.29 16 4 C -0.55 -28.85 8.73 25.60 0.22 -28.63 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -51.63 11.32 21.44 0.24 -51.38 16 8 Si 0.97 41.50 29.54 68.60 2.03 43.52 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 N -0.69 -29.04 5.03 -448.66 -2.25 -31.29 16 13 C 0.54 22.10 7.71 86.88 0.67 22.77 16 14 O -0.57 -26.57 12.87 -3.78 -0.05 -26.62 16 15 C -0.09 -2.82 5.91 -19.83 -0.12 -2.93 16 16 C -0.16 -4.32 9.55 22.70 0.22 -4.10 16 17 C 0.31 8.05 7.75 84.84 0.66 8.70 16 18 O -0.48 -10.11 13.56 -90.04 -1.22 -11.34 16 19 N -0.51 -13.64 10.18 -297.40 -3.03 -16.66 16 20 C 0.15 3.83 6.62 42.26 0.28 4.11 16 21 C -0.09 -2.69 5.77 -19.58 -0.11 -2.81 16 22 C -0.08 -2.30 4.29 29.70 0.13 -2.17 16 23 C -0.12 -2.40 5.99 30.62 0.18 -2.22 16 24 C -0.11 -1.72 5.97 30.61 0.18 -1.54 16 25 C -0.06 -1.12 5.91 29.77 0.18 -0.94 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 3.80 6.07 -2.38 -0.01 3.79 16 29 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 30 H 0.40 14.33 6.66 -92.71 -0.62 13.72 16 31 H 0.16 3.84 6.51 -2.91 -0.02 3.82 16 32 H 0.42 4.28 9.06 -74.06 -0.67 3.61 16 33 H 0.08 2.81 5.91 -2.39 -0.01 2.80 16 34 H 0.07 2.17 8.11 -2.39 -0.02 2.15 16 35 H 0.07 1.31 8.10 -2.39 -0.02 1.30 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -67.91 326.12 -0.77 -68.68 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.20 Total: 25.38 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 3.72 Total: -0.29 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -5.04 Total: -99.34 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.27 Total: -37.96 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -67.91 -0.77 -68.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.755 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds