Wall clock time and date at job start Tue Mar 31 2020 06:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.83309 * 2 1 4 4 C 1.55003 * 110.90560 * 123.64987 * 2 1 3 5 5 O 1.44377 * 103.49055 * 155.21980 * 4 2 1 6 6 C 1.43751 * 106.97693 * 319.93564 * 5 4 2 7 7 C 1.54105 * 107.28812 * 26.51417 * 6 5 4 8 8 H 1.08999 * 110.48327 * 239.15894 * 7 6 5 9 9 N 1.46504 * 110.48704 * 116.65008 * 7 6 5 10 10 C 1.34771 * 119.99913 * 86.44683 * 9 7 6 11 11 O 1.21588 * 120.00702 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99787 * 180.02562 * 10 9 7 13 13 C 1.39966 * 120.00103 * 174.63842 * 12 10 9 14 14 C 1.39280 * 119.94723 * 145.77786 * 13 12 10 15 15 C 1.38495 * 120.43034 * 180.02562 * 14 13 12 16 16 C 1.37681 * 120.31762 * 0.02562 * 15 14 13 17 17 C 1.40741 * 119.88458 * 359.97438 * 16 15 14 18 18 C 1.41408 * 120.20922 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00106 * 205.17375 * 18 17 16 20 20 C 1.39933 * 119.99640 * 25.18134 * 18 17 16 21 21 N 1.30826 * 120.00265 * 16.78219 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 196.78202 * 20 18 17 23 23 H 1.48500 * 109.47323 * 94.96206 * 22 20 18 24 24 H 1.48499 * 109.47381 * 214.96675 * 22 20 18 25 25 H 1.48502 * 109.47488 * 334.96379 * 22 20 18 26 26 C 1.38234 * 119.94049 * 325.50593 * 13 12 10 27 27 H 1.08997 * 109.47343 * 183.64810 * 1 2 3 28 28 H 1.09009 * 109.46930 * 303.64838 * 1 2 3 29 29 H 1.08995 * 109.47119 * 63.64486 * 1 2 3 30 30 H 1.08991 * 110.61874 * 36.71428 * 4 2 1 31 31 H 1.08997 * 110.74750 * 273.78380 * 4 2 1 32 32 H 1.08997 * 109.87686 * 267.09319 * 6 5 4 33 33 H 1.08998 * 109.88276 * 145.93511 * 6 5 4 34 34 H 0.96996 * 119.99934 * 266.45011 * 9 7 6 35 35 H 0.97001 * 120.00085 * 354.90930 * 12 10 9 36 36 H 1.07997 * 119.78682 * 359.97438 * 14 13 12 37 37 H 1.07997 * 119.83573 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.05557 * 179.97438 * 16 15 14 39 39 H 0.97003 * 120.00099 * 180.02562 * 21 20 18 40 40 H 1.07995 * 120.16700 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8024 1.2054 5 8 3.3940 -1.2145 0.7626 6 6 3.2717 -1.5884 -0.6200 7 6 2.0824 -0.8014 -1.2038 8 1 1.3256 -1.4844 -1.5897 9 7 2.5373 0.1071 -2.2593 10 6 2.6491 -0.3354 -3.5274 11 8 2.3720 -1.4885 -3.7956 12 7 3.0681 0.5003 -4.4982 13 6 3.2919 0.0143 -5.7915 14 6 3.0241 0.8222 -6.8940 15 6 3.2414 0.3513 -8.1781 16 6 3.7245 -0.9223 -8.3789 17 6 3.9997 -1.7501 -7.2744 18 6 4.4956 -3.0594 -7.4727 19 1 4.3312 -3.8185 -6.7223 20 6 5.1995 -3.3714 -8.6412 21 7 5.6845 -2.4133 -9.3883 22 14 5.4466 -5.1562 -9.1342 23 1 4.3830 -5.5576 -10.0897 24 1 6.7754 -5.3124 -9.7784 25 1 5.3777 -6.0175 -7.9265 26 6 3.7837 -1.2649 -5.9724 27 1 -0.3634 -1.0255 0.0654 28 1 -0.3633 0.5695 0.8556 29 1 -0.3633 0.4562 -0.9208 30 1 1.4561 -1.6704 1.4088 31 1 2.1580 -0.1689 2.0892 32 1 3.0824 -2.6589 -0.6991 33 1 4.1853 -1.3310 -1.1559 34 1 2.7580 1.0271 -2.0454 35 1 3.2183 1.4378 -4.2997 36 1 2.6437 1.8222 -6.7465 37 1 3.0308 0.9861 -9.0261 38 1 3.8920 -1.2854 -9.3822 39 1 6.1721 -2.6296 -10.1985 40 1 3.9963 -1.8904 -5.1180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931687851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:34 Heat of formation + Delta-G solvation = -54.880521 kcal Electronic energy + Delta-G solvation = -22653.474616 eV Core-core repulsion = 19239.824425 eV Total energy + Delta-G solvation = -3413.650191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43960 -39.23869 -37.25100 -34.81100 -34.32679 -33.14296 -32.68682 -29.78213 -29.10532 -27.52197 -26.46666 -25.25620 -23.12464 -21.54949 -20.93489 -20.77868 -19.92267 -17.97775 -17.66558 -16.91499 -16.13355 -15.65978 -15.38929 -15.04048 -14.73440 -14.55063 -14.34726 -13.98691 -13.45883 -13.30644 -13.07159 -12.90513 -12.54463 -12.21943 -11.97761 -11.68547 -11.55721 -11.25195 -11.15607 -11.10948 -11.06927 -10.88011 -10.42799 -10.19746 -9.93307 -9.68004 -9.47857 -9.09916 -8.99691 -8.92943 -7.40982 -6.86634 -6.67213 -4.30000 2.72765 2.86110 3.01480 3.12143 3.17580 3.24622 3.65498 3.75460 3.99666 4.18557 4.45552 4.56237 4.68149 4.71225 4.86536 5.11630 5.12457 5.31582 5.43436 5.48694 5.62915 5.72954 5.76441 5.81046 5.90220 6.26609 6.42781 6.54185 6.62160 6.80318 6.81947 7.07746 7.12430 7.27573 7.36995 7.71541 7.85095 8.02830 8.14606 8.27691 8.44072 8.70172 8.92224 9.00637 9.05641 10.25389 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.003620 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.926528 B = 7732.100538 C = 8671.526856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 H 0.091 0.909 4 C 0.051 3.949 5 O -0.378 6.378 6 C 0.033 3.967 7 C 0.139 3.861 8 H 0.104 0.896 9 N -0.742 5.742 10 C 0.698 3.302 11 O -0.565 6.565 12 N -0.680 5.680 13 C 0.168 3.832 14 C -0.263 4.263 15 C -0.092 4.092 16 C -0.173 4.173 17 C 0.121 3.879 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.076 3.924 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.209 4.209 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.394 0.606 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 6.381 15.312 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 H 0.109 0.891 4 C -0.026 4.026 5 O -0.297 6.297 6 C -0.045 4.045 7 C 0.032 3.968 8 H 0.122 0.878 9 N -0.399 5.399 10 C 0.398 3.602 11 O -0.440 6.440 12 N -0.326 5.326 13 C 0.076 3.924 14 C -0.284 4.284 15 C -0.111 4.111 16 C -0.193 4.193 17 C 0.117 3.883 18 C -0.488 4.488 19 H 0.096 0.904 20 C -0.141 4.141 21 N -0.422 5.422 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.231 4.231 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.228 0.772 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.431 5.311 15.002 17.164 hybrid contribution 0.210 0.265 -0.252 0.422 sum -6.221 5.577 14.749 16.951 Atomic orbital electron populations 1.21719 0.93152 1.02597 1.02467 1.22995 0.97254 1.00454 0.94513 0.89106 1.23599 0.84644 0.97639 0.96705 1.88898 1.28694 1.86455 1.25604 1.23745 0.99742 0.99169 0.81810 1.22195 0.96156 0.91696 0.86750 0.87780 1.45170 1.73865 1.14521 1.06390 1.15987 0.78588 0.85319 0.80267 1.90984 1.54975 1.16730 1.81287 1.42586 1.69921 1.11277 1.08858 1.17226 0.99533 0.95026 0.80627 1.20000 1.16737 0.99771 0.91938 1.20444 0.99963 0.96161 0.94532 1.21342 1.04315 0.94092 0.99551 1.17488 0.87970 0.92786 0.90013 1.19602 1.30274 0.96107 1.02835 0.90363 1.25894 0.93427 0.99325 0.95486 1.69831 1.25737 1.34036 1.12571 0.86300 0.78131 0.82702 0.79595 1.19367 1.20349 1.18551 1.20992 1.09776 0.95079 0.97249 0.91992 0.92018 0.91850 0.91768 0.88781 0.91277 0.89084 0.77210 0.77267 0.89401 0.89076 0.86339 0.91004 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.13 -1.09 3.44 -88.61 -0.30 -1.40 16 3 H 0.09 0.67 7.75 -51.93 -0.40 0.26 16 4 C 0.05 0.43 7.17 38.22 0.27 0.71 16 5 O -0.38 -4.59 11.52 -35.23 -0.41 -5.00 16 6 C 0.03 0.42 7.50 37.73 0.28 0.71 16 7 C 0.14 1.62 2.93 -66.40 -0.19 1.42 16 8 H 0.10 1.38 7.39 -51.93 -0.38 1.00 16 9 N -0.74 -9.37 5.05 -57.18 -0.29 -9.66 16 10 C 0.70 12.54 8.28 -86.92 -0.72 11.82 16 11 O -0.56 -12.80 13.82 5.29 0.07 -12.72 16 12 N -0.68 -12.20 5.34 -14.27 -0.08 -12.27 16 13 C 0.17 3.85 6.25 -83.76 -0.52 3.33 16 14 C -0.26 -5.84 9.97 -39.10 -0.39 -6.23 16 15 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 16 C -0.17 -4.60 8.69 -38.84 -0.34 -4.94 16 17 C 0.12 3.36 5.57 -106.85 -0.59 2.76 16 18 C -0.46 -12.77 9.05 -37.74 -0.34 -13.11 16 19 H 0.08 2.16 7.90 -52.48 -0.41 1.74 16 20 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 21 N -0.80 -20.95 10.94 55.55 0.61 -20.35 16 22 Si 0.91 19.35 29.59 -169.99 -5.03 14.32 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 26 C -0.21 -5.51 8.39 -38.68 -0.32 -5.84 16 27 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.01 -51.93 -0.42 0.07 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 34 H 0.39 3.73 8.37 -40.82 -0.34 3.39 16 35 H 0.39 5.42 8.84 -40.82 -0.36 5.06 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.12 3.23 6.16 -52.48 -0.32 2.90 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.11 2.89 6.49 -52.49 -0.34 2.55 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -32.04 333.08 -8.91 -40.95 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.49 Total: 11.84 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -3.32 Total: -12.12 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.24 Total: -42.28 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.33 Total: -17.72 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.04 -8.91 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.934 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds