Wall clock time and date at job start Tue Mar 31 2020 06:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.83309 * 2 1 4 4 C 1.55003 * 110.90560 * 123.64987 * 2 1 3 5 5 O 1.44377 * 103.49055 * 155.21980 * 4 2 1 6 6 C 1.43751 * 106.97693 * 319.93564 * 5 4 2 7 7 C 1.54105 * 107.28812 * 26.51417 * 6 5 4 8 8 H 1.08999 * 110.48327 * 239.15894 * 7 6 5 9 9 N 1.46504 * 110.48704 * 116.65008 * 7 6 5 10 10 C 1.34771 * 119.99913 * 86.44683 * 9 7 6 11 11 O 1.21588 * 120.00702 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99787 * 180.02562 * 10 9 7 13 13 C 1.39966 * 120.00103 * 174.63842 * 12 10 9 14 14 C 1.39280 * 119.94723 * 145.77786 * 13 12 10 15 15 C 1.38495 * 120.43034 * 180.02562 * 14 13 12 16 16 C 1.37681 * 120.31762 * 0.02562 * 15 14 13 17 17 C 1.40741 * 119.88458 * 359.97438 * 16 15 14 18 18 C 1.41408 * 120.20922 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00106 * 205.17375 * 18 17 16 20 20 C 1.39933 * 119.99640 * 25.18134 * 18 17 16 21 21 N 1.30826 * 120.00265 * 16.78219 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 196.78202 * 20 18 17 23 23 H 1.48500 * 109.47323 * 94.96206 * 22 20 18 24 24 H 1.48499 * 109.47381 * 214.96675 * 22 20 18 25 25 H 1.48502 * 109.47488 * 334.96379 * 22 20 18 26 26 C 1.38234 * 119.94049 * 325.50593 * 13 12 10 27 27 H 1.08997 * 109.47343 * 183.64810 * 1 2 3 28 28 H 1.09009 * 109.46930 * 303.64838 * 1 2 3 29 29 H 1.08995 * 109.47119 * 63.64486 * 1 2 3 30 30 H 1.08991 * 110.61874 * 36.71428 * 4 2 1 31 31 H 1.08997 * 110.74750 * 273.78380 * 4 2 1 32 32 H 1.08997 * 109.87686 * 267.09319 * 6 5 4 33 33 H 1.08998 * 109.88276 * 145.93511 * 6 5 4 34 34 H 0.96996 * 119.99934 * 266.45011 * 9 7 6 35 35 H 0.97001 * 120.00085 * 354.90930 * 12 10 9 36 36 H 1.07997 * 119.78682 * 359.97438 * 14 13 12 37 37 H 1.07997 * 119.83573 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.05557 * 179.97438 * 16 15 14 39 39 H 0.97003 * 120.00099 * 180.02562 * 21 20 18 40 40 H 1.07995 * 120.16700 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8024 1.2054 5 8 3.3940 -1.2145 0.7626 6 6 3.2717 -1.5884 -0.6200 7 6 2.0824 -0.8014 -1.2038 8 1 1.3256 -1.4844 -1.5897 9 7 2.5373 0.1071 -2.2593 10 6 2.6491 -0.3354 -3.5274 11 8 2.3720 -1.4885 -3.7956 12 7 3.0681 0.5003 -4.4982 13 6 3.2919 0.0143 -5.7915 14 6 3.0241 0.8222 -6.8940 15 6 3.2414 0.3513 -8.1781 16 6 3.7245 -0.9223 -8.3789 17 6 3.9997 -1.7501 -7.2744 18 6 4.4956 -3.0594 -7.4727 19 1 4.3312 -3.8185 -6.7223 20 6 5.1995 -3.3714 -8.6412 21 7 5.6845 -2.4133 -9.3883 22 14 5.4466 -5.1562 -9.1342 23 1 4.3830 -5.5576 -10.0897 24 1 6.7754 -5.3124 -9.7784 25 1 5.3777 -6.0175 -7.9265 26 6 3.7837 -1.2649 -5.9724 27 1 -0.3634 -1.0255 0.0654 28 1 -0.3633 0.5695 0.8556 29 1 -0.3633 0.4562 -0.9208 30 1 1.4561 -1.6704 1.4088 31 1 2.1580 -0.1689 2.0892 32 1 3.0824 -2.6589 -0.6991 33 1 4.1853 -1.3310 -1.1559 34 1 2.7580 1.0271 -2.0454 35 1 3.2183 1.4378 -4.2997 36 1 2.6437 1.8222 -6.7465 37 1 3.0308 0.9861 -9.0261 38 1 3.8920 -1.2854 -9.3822 39 1 6.1721 -2.6296 -10.1985 40 1 3.9963 -1.8904 -5.1180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931687851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:34 Heat of formation + Delta-G solvation = -77.132125 kcal Electronic energy + Delta-G solvation = -22654.439518 eV Core-core repulsion = 19239.824425 eV Total energy + Delta-G solvation = -3414.615093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70731 -40.44284 -39.01504 -36.27517 -35.79471 -34.84395 -33.69915 -31.73942 -30.44253 -29.02098 -27.25273 -27.12824 -24.33966 -22.99945 -22.64896 -21.87374 -21.43312 -19.61019 -19.19539 -18.05877 -17.36486 -17.13759 -16.71405 -16.45454 -16.31044 -16.09163 -15.78915 -15.18771 -14.88370 -14.68740 -14.18920 -14.10291 -14.02551 -13.51473 -13.35124 -13.04223 -12.92583 -12.88152 -12.77855 -12.41928 -12.17690 -12.03702 -11.93752 -11.79743 -11.54476 -11.25034 -10.98798 -10.86199 -10.79120 -10.12238 -9.38293 -8.72647 -8.58395 -6.36457 0.92855 1.03116 1.36128 1.48806 1.49986 1.62137 2.13901 2.21451 2.74604 2.90082 3.23721 3.37776 3.72903 3.76171 3.90024 4.02507 4.24779 4.44643 4.48075 4.61383 4.64992 4.70833 4.71941 4.83112 4.95483 5.05055 5.08199 5.12047 5.13352 5.19175 5.29683 5.33439 5.46096 5.69762 5.79059 5.84335 6.06306 6.11975 6.18294 6.37342 6.69720 6.95144 7.01694 7.07222 7.56597 8.33901 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.003620 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.926528 B = 7732.100538 C = 8671.526856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 H 0.109 0.891 4 C 0.046 3.954 5 O -0.393 6.393 6 C 0.036 3.964 7 C 0.134 3.866 8 H 0.086 0.914 9 N -0.716 5.716 10 C 0.695 3.305 11 O -0.615 6.615 12 N -0.669 5.669 13 C 0.176 3.824 14 C -0.250 4.250 15 C -0.090 4.090 16 C -0.199 4.199 17 C 0.090 3.910 18 C -0.504 4.504 19 H 0.061 0.939 20 C 0.039 3.961 21 N -0.822 5.822 22 Si 0.981 3.019 23 H -0.259 1.259 24 H -0.261 1.261 25 H -0.266 1.266 26 C -0.237 4.237 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.418 0.582 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.289 0.711 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 8.474 16.397 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 H 0.127 0.873 4 C -0.030 4.030 5 O -0.312 6.312 6 C -0.042 4.042 7 C 0.028 3.972 8 H 0.104 0.896 9 N -0.374 5.374 10 C 0.396 3.604 11 O -0.494 6.494 12 N -0.317 5.317 13 C 0.082 3.918 14 C -0.271 4.271 15 C -0.109 4.109 16 C -0.219 4.219 17 C 0.088 3.912 18 C -0.534 4.534 19 H 0.079 0.921 20 C -0.176 4.176 21 N -0.448 5.448 22 Si 0.801 3.199 23 H -0.184 1.184 24 H -0.185 1.185 25 H -0.190 1.190 26 C -0.259 4.259 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.252 0.748 35 H 0.256 0.744 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.313 7.493 16.149 19.246 hybrid contribution 0.428 -0.251 -0.445 0.667 sum -6.885 7.242 15.704 18.613 Atomic orbital electron populations 1.21719 0.91956 1.02862 1.03149 1.22975 0.98042 1.00623 0.92052 0.87270 1.23887 0.83141 0.98502 0.97501 1.88884 1.30950 1.86602 1.24796 1.23569 0.99211 0.98847 0.82579 1.22315 0.95413 0.92054 0.87424 0.89598 1.44922 1.72321 1.15609 1.04534 1.16192 0.78151 0.84518 0.81539 1.90966 1.57038 1.19079 1.82351 1.42325 1.69624 1.12505 1.07274 1.17278 0.97572 0.93829 0.83105 1.20438 1.14605 1.01259 0.90842 1.20831 0.98309 0.95234 0.96501 1.21309 1.06499 0.95673 0.98463 1.17815 0.88828 0.93458 0.91143 1.19747 1.32904 0.96430 1.04290 0.92094 1.26672 0.92361 1.03902 0.94666 1.69856 1.25850 1.36052 1.13030 0.85225 0.78896 0.76718 0.79027 1.18366 1.18547 1.19026 1.20942 1.12103 0.96774 0.96065 0.92286 0.89636 0.92571 0.90982 0.86102 0.92322 0.90960 0.74817 0.74410 0.84956 0.85799 0.87780 0.90006 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 71.98 0.66 -0.93 16 2 C -0.12 -1.63 3.44 -9.49 -0.03 -1.66 16 3 H 0.11 1.16 7.75 -2.39 -0.02 1.14 16 4 C 0.05 0.66 7.17 72.67 0.52 1.18 16 5 O -0.39 -9.13 11.52 -148.98 -1.72 -10.85 16 6 C 0.04 0.94 7.50 72.36 0.54 1.48 16 7 C 0.13 3.05 2.93 45.98 0.13 3.18 16 8 H 0.09 2.32 7.39 -2.39 -0.02 2.30 16 9 N -0.72 -17.20 5.05 -453.08 -2.29 -19.49 16 10 C 0.70 24.89 8.28 179.06 1.48 26.37 16 11 O -0.62 -29.00 13.82 -3.99 -0.06 -29.06 16 12 N -0.67 -23.07 5.34 -317.33 -1.70 -24.76 16 13 C 0.18 8.00 6.25 38.09 0.24 8.24 16 14 C -0.25 -10.51 9.97 22.58 0.23 -10.28 16 15 C -0.09 -4.13 10.02 22.20 0.22 -3.91 16 16 C -0.20 -10.86 8.69 22.75 0.20 -10.66 16 17 C 0.09 5.29 5.57 -21.31 -0.12 5.17 16 18 C -0.50 -29.82 9.05 23.46 0.21 -29.60 16 19 H 0.06 3.64 7.90 -2.91 -0.02 3.62 16 20 C 0.04 2.07 5.16 85.25 0.44 2.51 16 21 N -0.82 -44.40 10.94 21.82 0.24 -44.16 16 22 Si 0.98 40.74 29.59 68.60 2.03 42.77 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 C -0.24 -13.04 8.39 22.85 0.19 -12.85 16 27 H 0.06 0.72 8.09 -2.39 -0.02 0.70 16 28 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.94 8.01 -2.39 -0.02 0.92 16 31 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.11 7.93 -2.39 -0.02 2.09 16 34 H 0.41 6.70 8.37 -92.71 -0.78 5.92 16 35 H 0.42 10.21 8.84 -92.71 -0.82 9.39 16 36 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.10 5.87 6.16 -2.91 -0.02 5.85 16 39 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 40 H 0.08 4.82 6.49 -2.91 -0.02 4.80 16 Total: -1.00 -74.44 333.08 0.91 -73.53 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.52 Total: 33.76 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 4.92 Total: -21.75 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -3.75 Total: -88.41 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.77 Total: -39.91 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -74.44 0.91 -73.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.598 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds