Wall clock time and date at job start Tue Mar 31 2020 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.56606 * 2 1 4 4 C 1.54482 * 110.51023 * 237.32463 * 2 1 3 5 5 O 1.44418 * 104.80409 * 265.32942 * 4 2 1 6 6 C 1.44426 * 105.27581 * 319.49047 * 5 4 2 7 7 C 1.54472 * 104.80181 * 40.51088 * 6 5 4 8 8 H 1.09004 * 110.62543 * 217.31665 * 7 6 5 9 9 N 1.46501 * 110.51308 * 94.66685 * 7 6 5 10 10 C 1.34778 * 120.00001 * 90.35483 * 9 7 6 11 11 O 1.21585 * 120.00059 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99800 * 180.02562 * 10 9 7 13 13 C 1.39958 * 119.99850 * 174.85675 * 12 10 9 14 14 C 1.39288 * 119.94902 * 146.84573 * 13 12 10 15 15 C 1.38485 * 120.43349 * 180.27223 * 14 13 12 16 16 C 1.37685 * 120.31721 * 359.44974 * 15 14 13 17 17 C 1.40751 * 119.88154 * 0.52824 * 16 15 14 18 18 C 1.41406 * 120.20484 * 179.72703 * 17 16 15 19 19 H 1.08007 * 119.99836 * 150.81921 * 18 17 16 20 20 C 1.39937 * 120.00353 * 330.81706 * 18 17 16 21 21 N 1.30822 * 119.99732 * 344.38615 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 164.38505 * 20 18 17 23 23 H 1.48502 * 109.47116 * 60.00039 * 22 20 18 24 24 H 1.48501 * 109.47087 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47294 * 300.00231 * 22 20 18 26 26 C 1.38237 * 119.94890 * 326.82584 * 13 12 10 27 27 H 1.08996 * 109.47509 * 297.31779 * 1 2 3 28 28 H 1.09001 * 109.47609 * 57.32073 * 1 2 3 29 29 H 1.09001 * 109.47207 * 177.31767 * 1 2 3 30 30 H 1.09003 * 110.37269 * 24.16664 * 4 2 1 31 31 H 1.09005 * 110.36803 * 146.39143 * 4 2 1 32 32 H 1.08998 * 110.37352 * 281.67654 * 6 5 4 33 33 H 1.09002 * 110.37276 * 159.34010 * 6 5 4 34 34 H 0.97001 * 120.00360 * 270.35394 * 9 7 6 35 35 H 0.96999 * 120.00376 * 354.85053 * 12 10 9 36 36 H 1.08005 * 119.78005 * 0.02562 * 14 13 12 37 37 H 1.07994 * 119.84276 * 179.70674 * 15 14 13 38 38 H 1.08005 * 120.05914 * 180.28011 * 16 15 14 39 39 H 0.96999 * 120.00102 * 180.02562 * 21 20 18 40 40 H 1.08000 * 120.15568 * 359.97432 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9128 1.0205 0.0000 4 6 2.0712 -0.7811 -1.2179 5 8 2.3069 -2.1176 -0.7240 6 6 2.8757 -1.9421 0.5919 7 6 2.0714 -0.7814 1.2179 8 1 2.7200 -0.1465 1.8215 9 7 0.9661 -1.3007 2.0273 10 6 1.1521 -1.5553 3.3377 11 8 2.2370 -1.3536 3.8482 12 7 0.1354 -2.0334 4.0821 13 6 0.3557 -2.3993 5.4149 14 6 -0.6541 -2.2288 6.3589 15 6 -0.4451 -2.5822 7.6815 16 6 0.7609 -3.1170 8.0757 17 6 1.7905 -3.2955 7.1328 18 6 3.0337 -3.8389 7.5313 19 1 3.6271 -4.4031 6.8269 20 6 3.4953 -3.6455 8.8381 21 7 2.9511 -2.7275 9.5948 22 14 4.8883 -4.6981 9.5019 23 1 6.0978 -4.5056 8.6621 24 1 5.1883 -4.2977 10.9001 25 1 4.4868 -6.1274 9.4711 26 6 1.5752 -2.9298 5.7923 27 1 -0.3634 0.4716 0.9130 28 1 -0.3634 0.5549 -0.8650 29 1 -0.3634 -1.0265 -0.0481 30 1 1.3309 -0.7972 -2.0179 31 1 3.0012 -0.3359 -1.5714 32 1 3.9301 -1.6762 0.5172 33 1 2.7535 -2.8502 1.1823 34 1 0.1004 -1.4612 1.6201 35 1 -0.7491 -2.1239 3.6942 36 1 -1.6052 -1.8145 6.0582 37 1 -1.2331 -2.4415 8.4064 38 1 0.9179 -3.3954 9.1073 39 1 3.2713 -2.5932 10.5005 40 1 2.3586 -3.0631 5.0609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931687854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:39 Heat of formation + Delta-G solvation = -47.379519 kcal Electronic energy + Delta-G solvation = -22830.661912 eV Core-core repulsion = 19417.336989 eV Total energy + Delta-G solvation = -3413.324923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54410 -39.21759 -37.22140 -34.87439 -34.32021 -33.01606 -32.30829 -29.76380 -29.24516 -27.57448 -26.68175 -25.22785 -23.07999 -21.76073 -20.86827 -20.20828 -19.97763 -18.18569 -17.65800 -16.71739 -16.36247 -15.58916 -15.38638 -14.90625 -14.78200 -14.50984 -14.32344 -13.99907 -13.58427 -13.24100 -12.98170 -12.83862 -12.53737 -12.20139 -11.84075 -11.63508 -11.41047 -11.34378 -11.28772 -11.07722 -11.05767 -10.62699 -10.48873 -10.14005 -10.03015 -9.70211 -9.54169 -9.14675 -8.88131 -8.86438 -7.36047 -6.81832 -6.64764 -4.28035 2.76325 2.90375 3.04891 3.12961 3.16724 3.25988 3.67734 3.82279 4.02412 4.22332 4.50407 4.59844 4.63644 4.72199 4.92203 5.11267 5.17992 5.32959 5.43231 5.45137 5.61082 5.69537 5.75724 5.79913 5.88750 6.25930 6.42963 6.51919 6.63771 6.82395 6.83212 7.08781 7.14518 7.27940 7.39130 7.73430 7.86145 8.02255 8.14870 8.29741 8.46830 8.71336 8.94587 9.02738 9.08035 10.31541 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.003734 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.371628 B = 7497.795924 C = 8458.842396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 H 0.094 0.906 4 C 0.047 3.953 5 O -0.374 6.374 6 C 0.032 3.968 7 C 0.137 3.863 8 H 0.106 0.894 9 N -0.742 5.742 10 C 0.695 3.305 11 O -0.563 6.563 12 N -0.681 5.681 13 C 0.168 3.832 14 C -0.262 4.262 15 C -0.092 4.092 16 C -0.170 4.170 17 C 0.123 3.877 18 C -0.463 4.463 19 H 0.076 0.924 20 C 0.077 3.923 21 N -0.798 5.798 22 Si 0.908 3.092 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.264 1.264 26 C -0.208 4.208 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.396 0.604 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.279 0.721 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 4.437 -16.506 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 H 0.112 0.888 4 C -0.030 4.030 5 O -0.293 6.293 6 C -0.046 4.046 7 C 0.030 3.970 8 H 0.124 0.876 9 N -0.401 5.401 10 C 0.396 3.604 11 O -0.438 6.438 12 N -0.327 5.327 13 C 0.076 3.924 14 C -0.283 4.283 15 C -0.111 4.111 16 C -0.190 4.190 17 C 0.120 3.880 18 C -0.493 4.493 19 H 0.094 0.906 20 C -0.140 4.140 21 N -0.424 5.424 22 Si 0.733 3.267 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.189 1.189 26 C -0.229 4.229 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.232 0.768 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.726 4.535 -15.928 16.975 hybrid contribution -0.166 -0.157 0.109 0.253 sum -3.892 4.378 -15.819 16.869 Atomic orbital electron populations 1.21760 0.93947 1.02166 1.02542 1.22822 0.97598 1.00444 0.94540 0.88792 1.23508 1.00126 0.83286 0.96107 1.89150 1.83212 1.25512 1.31382 1.23985 0.96906 1.00146 0.83549 1.22086 0.88640 0.94693 0.91564 0.87574 1.45347 1.14949 1.71881 1.07974 1.16034 0.84921 0.78549 0.80911 1.90998 1.24360 1.57269 1.71180 1.42587 1.11086 1.67203 1.11824 1.17247 0.96034 0.98678 0.80450 1.20001 0.98596 1.16363 0.93363 1.20431 0.96938 0.99745 0.93965 1.21254 0.92068 1.05527 1.00167 1.17473 0.92524 0.87902 0.90093 1.19484 1.03322 1.30414 0.96060 0.90569 1.25853 0.97666 0.93922 0.96564 1.69817 1.38463 1.25321 1.08800 0.86379 0.81257 0.81061 0.78047 1.19065 1.20425 1.18892 1.21012 0.96359 1.07812 0.97741 0.91634 0.91921 0.91981 0.88956 0.92050 0.91228 0.88312 0.76764 0.77326 0.89365 0.89051 0.86845 0.90981 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.79 37.15 0.29 -0.77 16 2 C -0.13 -1.12 3.72 -89.06 -0.33 -1.45 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.05 0.39 7.18 37.94 0.27 0.66 16 5 O -0.37 -4.45 11.65 -35.23 -0.41 -4.86 16 6 C 0.03 0.39 7.35 37.93 0.28 0.67 16 7 C 0.14 1.62 3.46 -66.37 -0.23 1.39 16 8 H 0.11 1.42 7.55 -51.93 -0.39 1.03 16 9 N -0.74 -9.69 4.56 -57.15 -0.26 -9.95 16 10 C 0.70 12.76 8.30 -86.92 -0.72 12.04 16 11 O -0.56 -13.08 13.65 5.29 0.07 -13.01 16 12 N -0.68 -12.34 5.35 -14.27 -0.08 -12.41 16 13 C 0.17 3.87 6.28 -83.76 -0.53 3.34 16 14 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 15 C -0.09 -2.17 10.02 -39.69 -0.40 -2.56 16 16 C -0.17 -4.53 8.66 -38.83 -0.34 -4.86 16 17 C 0.12 3.44 5.52 -106.85 -0.59 2.85 16 18 C -0.46 -12.94 9.04 -37.74 -0.34 -13.28 16 19 H 0.08 2.07 7.89 -52.48 -0.41 1.66 16 20 C 0.08 2.02 5.15 -17.35 -0.09 1.93 16 21 N -0.80 -21.52 11.15 55.55 0.62 -20.90 16 22 Si 0.91 19.49 29.59 -169.99 -5.03 14.46 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 26 C -0.21 -5.48 8.39 -38.69 -0.32 -5.81 16 27 H 0.06 0.51 7.78 -51.93 -0.40 0.10 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 7.00 -51.93 -0.36 0.09 16 30 H 0.09 0.63 7.87 -51.93 -0.41 0.22 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.39 8.06 -51.93 -0.42 0.97 16 34 H 0.40 4.09 5.99 -40.82 -0.24 3.84 16 35 H 0.39 5.46 8.83 -40.82 -0.36 5.10 16 36 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.11 3.08 6.43 -52.48 -0.34 2.75 16 39 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 40 H 0.11 2.97 6.38 -52.49 -0.34 2.63 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -32.49 328.86 -8.91 -41.41 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.35 Total: 12.36 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -3.44 Total: -12.06 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.28 Total: -43.26 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.34 Total: -17.86 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.49 -8.91 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.971 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds