Wall clock time and date at job start Tue Mar 31 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.56606 * 2 1 4 4 C 1.54482 * 110.51023 * 237.32463 * 2 1 3 5 5 O 1.44418 * 104.80409 * 265.32942 * 4 2 1 6 6 C 1.44426 * 105.27581 * 319.49047 * 5 4 2 7 7 C 1.54472 * 104.80181 * 40.51088 * 6 5 4 8 8 H 1.09004 * 110.62543 * 217.31665 * 7 6 5 9 9 N 1.46501 * 110.51308 * 94.66685 * 7 6 5 10 10 C 1.34778 * 120.00001 * 90.35483 * 9 7 6 11 11 O 1.21585 * 120.00059 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99800 * 180.02562 * 10 9 7 13 13 C 1.39958 * 119.99850 * 174.85675 * 12 10 9 14 14 C 1.39288 * 119.94902 * 146.84573 * 13 12 10 15 15 C 1.38485 * 120.43349 * 180.27223 * 14 13 12 16 16 C 1.37685 * 120.31721 * 359.44974 * 15 14 13 17 17 C 1.40751 * 119.88154 * 0.52824 * 16 15 14 18 18 C 1.41406 * 120.20484 * 179.72703 * 17 16 15 19 19 H 1.08007 * 119.99836 * 150.81921 * 18 17 16 20 20 C 1.39937 * 120.00353 * 330.81706 * 18 17 16 21 21 N 1.30822 * 119.99732 * 344.38615 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 164.38505 * 20 18 17 23 23 H 1.48502 * 109.47116 * 60.00039 * 22 20 18 24 24 H 1.48501 * 109.47087 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47294 * 300.00231 * 22 20 18 26 26 C 1.38237 * 119.94890 * 326.82584 * 13 12 10 27 27 H 1.08996 * 109.47509 * 297.31779 * 1 2 3 28 28 H 1.09001 * 109.47609 * 57.32073 * 1 2 3 29 29 H 1.09001 * 109.47207 * 177.31767 * 1 2 3 30 30 H 1.09003 * 110.37269 * 24.16664 * 4 2 1 31 31 H 1.09005 * 110.36803 * 146.39143 * 4 2 1 32 32 H 1.08998 * 110.37352 * 281.67654 * 6 5 4 33 33 H 1.09002 * 110.37276 * 159.34010 * 6 5 4 34 34 H 0.97001 * 120.00360 * 270.35394 * 9 7 6 35 35 H 0.96999 * 120.00376 * 354.85053 * 12 10 9 36 36 H 1.08005 * 119.78005 * 0.02562 * 14 13 12 37 37 H 1.07994 * 119.84276 * 179.70674 * 15 14 13 38 38 H 1.08005 * 120.05914 * 180.28011 * 16 15 14 39 39 H 0.96999 * 120.00102 * 180.02562 * 21 20 18 40 40 H 1.08000 * 120.15568 * 359.97432 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9128 1.0205 0.0000 4 6 2.0712 -0.7811 -1.2179 5 8 2.3069 -2.1176 -0.7240 6 6 2.8757 -1.9421 0.5919 7 6 2.0714 -0.7814 1.2179 8 1 2.7200 -0.1465 1.8215 9 7 0.9661 -1.3007 2.0273 10 6 1.1521 -1.5553 3.3377 11 8 2.2370 -1.3536 3.8482 12 7 0.1354 -2.0334 4.0821 13 6 0.3557 -2.3993 5.4149 14 6 -0.6541 -2.2288 6.3589 15 6 -0.4451 -2.5822 7.6815 16 6 0.7609 -3.1170 8.0757 17 6 1.7905 -3.2955 7.1328 18 6 3.0337 -3.8389 7.5313 19 1 3.6271 -4.4031 6.8269 20 6 3.4953 -3.6455 8.8381 21 7 2.9511 -2.7275 9.5948 22 14 4.8883 -4.6981 9.5019 23 1 6.0978 -4.5056 8.6621 24 1 5.1883 -4.2977 10.9001 25 1 4.4868 -6.1274 9.4711 26 6 1.5752 -2.9298 5.7923 27 1 -0.3634 0.4716 0.9130 28 1 -0.3634 0.5549 -0.8650 29 1 -0.3634 -1.0265 -0.0481 30 1 1.3309 -0.7972 -2.0179 31 1 3.0012 -0.3359 -1.5714 32 1 3.9301 -1.6762 0.5172 33 1 2.7535 -2.8502 1.1823 34 1 0.1004 -1.4612 1.6201 35 1 -0.7491 -2.1239 3.6942 36 1 -1.6052 -1.8145 6.0582 37 1 -1.2331 -2.4415 8.4064 38 1 0.9179 -3.3954 9.1073 39 1 3.2713 -2.5932 10.5005 40 1 2.3586 -3.0631 5.0609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931687854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:38 Heat of formation + Delta-G solvation = -69.729011 kcal Electronic energy + Delta-G solvation = -22831.631059 eV Core-core repulsion = 19417.336989 eV Total energy + Delta-G solvation = -3414.294070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.77899 -40.46689 -38.98932 -36.24754 -35.87500 -34.81927 -33.27514 -31.73181 -30.50547 -29.13136 -27.34230 -27.22090 -24.29595 -23.10404 -22.71652 -21.73609 -21.00070 -19.66073 -19.40388 -17.83946 -17.45915 -17.16883 -16.79678 -16.50749 -16.20126 -16.07155 -15.72443 -15.10927 -14.92601 -14.66232 -14.32711 -14.06700 -13.91622 -13.61832 -13.25906 -13.15914 -12.80869 -12.78432 -12.56920 -12.24681 -12.22718 -12.09202 -11.97325 -11.74544 -11.57034 -11.31919 -11.02404 -10.89369 -10.72070 -10.07755 -9.34329 -8.67115 -8.59307 -6.36044 0.93688 1.03545 1.36283 1.48037 1.51518 1.64732 2.14878 2.22920 2.76473 2.98094 3.24385 3.42861 3.74142 3.77932 3.93961 4.10928 4.26543 4.45734 4.48479 4.55237 4.64536 4.70811 4.77461 4.83230 4.97090 5.04306 5.07852 5.11941 5.13741 5.18197 5.29553 5.32878 5.43343 5.69496 5.80354 5.84913 6.06173 6.10615 6.17842 6.38893 6.69911 6.95679 7.01793 7.07485 7.58182 8.37970 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.003734 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.371628 B = 7497.795924 C = 8458.842396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 H 0.112 0.888 4 C 0.043 3.957 5 O -0.391 6.391 6 C 0.035 3.965 7 C 0.129 3.871 8 H 0.088 0.912 9 N -0.717 5.717 10 C 0.693 3.307 11 O -0.616 6.616 12 N -0.669 5.669 13 C 0.175 3.825 14 C -0.248 4.248 15 C -0.090 4.090 16 C -0.195 4.195 17 C 0.092 3.908 18 C -0.508 4.508 19 H 0.065 0.935 20 C 0.037 3.963 21 N -0.830 5.830 22 Si 0.982 3.018 23 H -0.266 1.266 24 H -0.263 1.263 25 H -0.257 1.257 26 C -0.234 4.234 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.413 0.587 35 H 0.418 0.582 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.288 0.712 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 5.363 -18.013 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 H 0.130 0.870 4 C -0.033 4.033 5 O -0.310 6.310 6 C -0.043 4.043 7 C 0.022 3.978 8 H 0.106 0.894 9 N -0.376 5.376 10 C 0.393 3.607 11 O -0.495 6.495 12 N -0.317 5.317 13 C 0.081 3.919 14 C -0.269 4.269 15 C -0.109 4.109 16 C -0.215 4.215 17 C 0.090 3.910 18 C -0.538 4.538 19 H 0.083 0.917 20 C -0.177 4.177 21 N -0.456 5.456 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.187 1.187 25 H -0.181 1.181 26 C -0.256 4.256 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.255 0.745 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.518 5.475 -17.516 19.164 hybrid contribution 0.252 -0.354 0.401 0.592 sum -5.266 5.121 -17.115 18.625 Atomic orbital electron populations 1.21785 0.92725 1.02493 1.03455 1.22830 0.98560 1.00658 0.92233 0.87023 1.23765 1.01573 0.81588 0.96369 1.89133 1.83243 1.27824 1.30786 1.23835 0.97582 0.98994 0.83923 1.22253 0.88296 0.94809 0.92405 0.89428 1.45152 1.16186 1.70300 1.05982 1.16246 0.84002 0.78181 0.82227 1.90976 1.26491 1.59393 1.72616 1.42328 1.12400 1.66739 1.10279 1.17303 0.94935 0.96873 0.82747 1.20444 0.99816 1.14258 0.92399 1.20821 0.96482 0.98087 0.95477 1.21222 0.93339 1.07624 0.99325 1.17805 0.93245 0.88805 0.91178 1.19707 1.04267 1.32383 0.97474 0.91724 1.26695 1.00278 0.94719 0.96058 1.69863 1.40062 1.26341 1.09373 0.85268 0.77467 0.79188 0.77808 1.19014 1.18661 1.18147 1.20961 0.97664 1.09964 0.97060 0.92048 0.89607 0.92043 0.86761 0.90659 0.90495 0.90966 0.74733 0.74467 0.84869 0.85728 0.88346 0.90173 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.79 71.98 0.56 -1.05 16 2 C -0.12 -1.74 3.72 -9.78 -0.04 -1.77 16 3 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.04 0.60 7.18 72.49 0.52 1.12 16 5 O -0.39 -8.77 11.65 -148.98 -1.74 -10.51 16 6 C 0.03 0.86 7.35 72.48 0.53 1.39 16 7 C 0.13 2.96 3.46 46.00 0.16 3.12 16 8 H 0.09 2.39 7.55 -2.38 -0.02 2.37 16 9 N -0.72 -18.04 4.56 -452.98 -2.06 -20.10 16 10 C 0.69 25.46 8.30 179.05 1.49 26.95 16 11 O -0.62 -29.78 13.65 -3.98 -0.05 -29.84 16 12 N -0.67 -23.45 5.35 -317.32 -1.70 -25.15 16 13 C 0.18 8.01 6.28 38.10 0.24 8.25 16 14 C -0.25 -10.43 9.97 22.58 0.23 -10.21 16 15 C -0.09 -4.13 10.02 22.20 0.22 -3.91 16 16 C -0.20 -10.65 8.66 22.75 0.20 -10.45 16 17 C 0.09 5.42 5.52 -21.31 -0.12 5.30 16 18 C -0.51 -30.13 9.04 23.46 0.21 -29.92 16 19 H 0.06 3.79 7.89 -2.91 -0.02 3.77 16 20 C 0.04 1.98 5.15 85.25 0.44 2.42 16 21 N -0.83 -46.17 11.15 21.82 0.24 -45.92 16 22 Si 0.98 41.08 29.59 68.60 2.03 43.11 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 C -0.23 -12.95 8.39 22.85 0.19 -12.76 16 27 H 0.06 0.75 7.78 -2.39 -0.02 0.73 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.69 7.00 -2.39 -0.02 0.68 16 30 H 0.11 1.12 7.87 -2.39 -0.02 1.10 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 34 H 0.41 7.62 5.99 -92.71 -0.56 7.07 16 35 H 0.42 10.41 8.83 -92.71 -0.82 9.59 16 36 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.10 5.56 6.43 -2.91 -0.02 5.54 16 39 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 40 H 0.08 4.99 6.38 -2.91 -0.02 4.97 16 Total: -1.00 -75.41 328.86 1.25 -74.16 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.30 Total: 35.76 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.83 Total: -21.51 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -3.52 Total: -91.18 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.79 Total: -40.35 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -75.41 1.25 -74.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.430 kcal (2) G-P(sol) polarization free energy of solvation -75.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds