Wall clock time and date at job start Tue Mar 31 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.54109 * 2 1 4 4 C 1.54103 * 110.48712 * 237.37927 * 2 1 3 5 5 O 1.43739 * 107.29417 * 243.35343 * 4 2 1 6 6 C 1.44382 * 106.97776 * 333.48976 * 5 4 2 7 7 C 1.54817 * 110.48740 * 122.61313 * 2 1 3 8 8 H 1.09006 * 110.93289 * 21.34760 * 7 2 1 9 9 N 1.46500 * 110.90709 * 257.75721 * 7 2 1 10 10 C 1.34773 * 120.00116 * 160.84343 * 9 7 2 11 11 O 1.21591 * 119.99608 * 359.97438 * 10 9 7 12 12 N 1.34767 * 120.00304 * 179.97438 * 10 9 7 13 13 C 1.39960 * 120.00294 * 175.48472 * 12 10 9 14 14 C 1.39291 * 119.94627 * 215.60417 * 13 12 10 15 15 C 1.38484 * 120.42520 * 179.97438 * 14 13 12 16 16 C 1.37687 * 120.32609 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.87932 * 0.02562 * 16 15 14 18 18 C 1.41409 * 120.20683 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99824 * 204.67777 * 18 17 16 20 20 C 1.39929 * 119.99903 * 24.95545 * 18 17 16 21 21 N 1.30823 * 120.00370 * 14.97917 * 20 18 17 22 22 Si 1.86799 * 119.99890 * 194.97703 * 20 18 17 23 23 H 1.48501 * 109.47318 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47414 * 120.00229 * 22 20 18 25 25 H 1.48503 * 109.47126 * 240.00060 * 22 20 18 26 26 C 1.38230 * 119.94645 * 35.88403 * 13 12 10 27 27 H 1.08997 * 109.47328 * 297.38671 * 1 2 3 28 28 H 1.08997 * 109.47401 * 57.38753 * 1 2 3 29 29 H 1.09002 * 109.47116 * 177.38853 * 1 2 3 30 30 H 1.09004 * 109.87432 * 123.93279 * 4 2 1 31 31 H 1.08996 * 109.87624 * 2.78051 * 4 2 1 32 32 H 1.09006 * 110.61505 * 281.55845 * 6 5 4 33 33 H 1.09001 * 110.75868 * 158.62886 * 6 5 4 34 34 H 0.96999 * 119.99855 * 340.83901 * 9 7 2 35 35 H 0.97001 * 120.00070 * 355.48762 * 12 10 9 36 36 H 1.07993 * 119.78730 * 0.02562 * 14 13 12 37 37 H 1.08004 * 119.84082 * 180.02562 * 15 14 13 38 38 H 1.07998 * 120.06126 * 180.02562 * 16 15 14 39 39 H 0.97002 * 120.00533 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.16133 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0693 -0.7782 -1.2159 5 8 2.7955 -1.9110 -0.7103 6 6 3.2659 -1.5561 0.6078 7 6 2.0718 -0.7816 1.2216 8 1 1.3199 -1.4693 1.6087 9 7 2.5267 0.1357 2.2694 10 6 2.6676 -0.3041 3.5355 11 8 2.4168 -1.4622 3.8082 12 7 3.0865 0.5396 4.4993 13 6 3.1425 0.1096 5.8300 14 6 2.8386 0.9960 6.8606 15 6 2.8904 0.5809 8.1807 16 6 3.2426 -0.7139 8.4891 17 6 3.5523 -1.6207 7.4582 18 6 3.9155 -2.9520 7.7670 19 1 4.5187 -3.5215 7.0754 20 6 3.4885 -3.5335 8.9660 21 7 2.5294 -2.9751 9.6588 22 14 4.2879 -5.1071 9.5775 23 1 5.3385 -5.5337 8.6187 24 1 4.9002 -4.8664 10.9087 25 1 3.2599 -6.1728 9.6910 26 6 3.5050 -1.1925 6.1197 27 1 -0.3634 0.4727 0.9124 28 1 -0.3634 0.5538 -0.8656 29 1 -0.3633 -1.0266 -0.0468 30 1 2.7351 -0.1410 -1.7980 31 1 1.2400 -1.1166 -1.8368 32 1 4.1456 -0.9158 0.5419 33 1 3.4857 -2.4491 1.1929 34 1 2.7264 1.0596 2.0518 35 1 3.3491 1.4450 4.2707 36 1 2.5601 2.0133 6.6285 37 1 2.6525 1.2761 8.9723 38 1 3.2812 -1.0331 9.5200 39 1 2.2336 -3.3779 10.4901 40 1 3.7448 -1.8794 5.3215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931687855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:41 Heat of formation + Delta-G solvation = -53.715473 kcal Electronic energy + Delta-G solvation = -22653.291536 eV Core-core repulsion = 19239.691865 eV Total energy + Delta-G solvation = -3413.599671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41740 -39.26596 -37.24882 -34.83146 -34.33072 -33.11968 -32.66578 -29.77024 -29.11479 -27.50774 -26.46708 -25.25031 -23.07479 -21.51288 -20.95826 -20.80055 -19.98394 -18.04130 -17.62578 -16.81176 -16.17201 -15.48271 -15.40637 -15.03128 -14.79985 -14.56706 -14.13528 -14.08444 -13.87247 -13.07848 -12.91905 -12.83442 -12.60443 -12.36175 -12.05695 -11.72961 -11.48189 -11.27312 -11.19212 -11.07877 -10.98422 -10.63980 -10.44970 -10.15978 -9.93046 -9.70629 -9.53898 -9.17407 -8.96145 -8.81970 -7.39474 -6.85512 -6.65764 -4.28960 2.72998 2.83460 3.00445 3.13012 3.19344 3.24202 3.65971 3.84995 4.00640 4.14947 4.47090 4.56711 4.61809 4.70156 4.90800 5.07341 5.10862 5.34863 5.46967 5.56604 5.62820 5.76072 5.79236 5.81351 5.94348 6.27238 6.40498 6.44328 6.70862 6.80057 6.81927 7.09036 7.16008 7.29325 7.37625 7.72330 7.86177 8.04283 8.15558 8.29509 8.44616 8.71846 8.93227 9.01829 9.06788 10.27510 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.003636 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.000664 B = 7699.726212 C = 8611.199056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 H 0.087 0.913 4 C 0.052 3.948 5 O -0.374 6.374 6 C 0.034 3.966 7 C 0.140 3.860 8 H 0.107 0.893 9 N -0.741 5.741 10 C 0.697 3.303 11 O -0.560 6.560 12 N -0.680 5.680 13 C 0.164 3.836 14 C -0.263 4.263 15 C -0.093 4.093 16 C -0.174 4.174 17 C 0.117 3.883 18 C -0.455 4.455 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.796 5.796 22 Si 0.909 3.091 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.275 1.275 26 C -0.209 4.209 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.393 0.607 35 H 0.394 0.606 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.278 0.722 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 8.102 -15.648 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 H 0.106 0.894 4 C -0.026 4.026 5 O -0.292 6.292 6 C -0.044 4.044 7 C 0.033 3.967 8 H 0.124 0.876 9 N -0.399 5.399 10 C 0.397 3.603 11 O -0.435 6.435 12 N -0.326 5.326 13 C 0.072 3.928 14 C -0.285 4.285 15 C -0.112 4.112 16 C -0.194 4.194 17 C 0.114 3.886 18 C -0.485 4.485 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.422 5.422 22 Si 0.734 3.266 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.230 4.230 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.227 0.773 35 H 0.227 0.773 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.440 6.756 -15.325 16.810 hybrid contribution 0.356 0.564 0.209 0.699 sum -1.083 7.320 -15.116 16.830 Atomic orbital electron populations 1.21816 0.93178 1.02715 1.02310 1.22768 0.97771 1.00227 0.94614 0.89421 1.23218 0.95878 0.88094 0.95366 1.88914 1.72145 1.36788 1.31367 1.24045 0.96208 1.01063 0.83070 1.22370 0.96547 0.91377 0.86400 0.87555 1.45030 1.74214 1.13623 1.07033 1.16001 0.78660 0.85431 0.80199 1.91004 1.55681 1.16110 1.80658 1.42542 1.68757 1.15043 1.06279 1.17233 1.00991 0.94779 0.79789 1.20013 1.17754 0.98167 0.92546 1.20450 1.00509 0.96092 0.94154 1.21408 1.06215 0.91744 1.00004 1.17527 0.88070 0.92996 0.89992 1.19607 1.28790 0.97486 1.02598 0.90457 1.25895 0.93317 0.99095 0.95959 1.69831 1.20588 1.38470 1.13304 0.86250 0.80066 0.81107 0.79221 1.18415 1.19788 1.20023 1.21096 1.10575 0.94751 0.96595 0.91921 0.92145 0.91835 0.92279 0.89471 0.91938 0.87870 0.77306 0.77304 0.89463 0.89116 0.86083 0.91065 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.92 37.16 0.33 -0.79 16 2 C -0.13 -1.13 3.38 -89.09 -0.30 -1.43 16 3 H 0.09 0.58 7.73 -51.93 -0.40 0.18 16 4 C 0.05 0.45 7.37 37.73 0.28 0.73 16 5 O -0.37 -4.63 11.52 -35.23 -0.41 -5.04 16 6 C 0.03 0.42 7.41 38.21 0.28 0.71 16 7 C 0.14 1.67 2.96 -65.92 -0.19 1.47 16 8 H 0.11 1.54 7.45 -51.93 -0.39 1.15 16 9 N -0.74 -9.16 5.23 -56.71 -0.30 -9.46 16 10 C 0.70 12.51 8.40 -86.93 -0.73 11.78 16 11 O -0.56 -12.91 13.56 5.29 0.07 -12.84 16 12 N -0.68 -12.03 5.34 -14.27 -0.08 -12.10 16 13 C 0.16 3.74 6.28 -83.76 -0.53 3.22 16 14 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 15 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 16 C -0.17 -4.62 8.69 -38.84 -0.34 -4.95 16 17 C 0.12 3.26 5.58 -106.85 -0.60 2.67 16 18 C -0.46 -12.67 9.06 -37.74 -0.34 -13.01 16 19 H 0.08 2.11 7.89 -52.48 -0.41 1.69 16 20 C 0.07 1.93 5.20 -17.35 -0.09 1.84 16 21 N -0.80 -21.22 10.81 55.55 0.60 -20.62 16 22 Si 0.91 19.38 29.59 -169.99 -5.03 14.35 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.21 -5.48 8.43 -38.69 -0.33 -5.81 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.66 7.69 -51.93 -0.40 0.26 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.39 3.46 8.36 -40.82 -0.34 3.12 16 35 H 0.39 5.24 8.84 -40.82 -0.36 4.88 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.12 3.30 6.08 -52.49 -0.32 2.98 16 39 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.11 3.05 6.27 -52.48 -0.33 2.72 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -32.32 332.59 -8.93 -41.25 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -5.47 Total: 11.82 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -3.34 Total: -12.37 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.23 Total: -42.19 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.33 Total: -17.88 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.32 -8.93 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.462 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds