Wall clock time and date at job start Tue Mar 31 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.54109 * 2 1 4 4 C 1.54103 * 110.48712 * 237.37927 * 2 1 3 5 5 O 1.43739 * 107.29417 * 243.35343 * 4 2 1 6 6 C 1.44382 * 106.97776 * 333.48976 * 5 4 2 7 7 C 1.54817 * 110.48740 * 122.61313 * 2 1 3 8 8 H 1.09006 * 110.93289 * 21.34760 * 7 2 1 9 9 N 1.46500 * 110.90709 * 257.75721 * 7 2 1 10 10 C 1.34773 * 120.00116 * 160.84343 * 9 7 2 11 11 O 1.21591 * 119.99608 * 359.97438 * 10 9 7 12 12 N 1.34767 * 120.00304 * 179.97438 * 10 9 7 13 13 C 1.39960 * 120.00294 * 175.48472 * 12 10 9 14 14 C 1.39291 * 119.94627 * 215.60417 * 13 12 10 15 15 C 1.38484 * 120.42520 * 179.97438 * 14 13 12 16 16 C 1.37687 * 120.32609 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.87932 * 0.02562 * 16 15 14 18 18 C 1.41409 * 120.20683 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99824 * 204.67777 * 18 17 16 20 20 C 1.39929 * 119.99903 * 24.95545 * 18 17 16 21 21 N 1.30823 * 120.00370 * 14.97917 * 20 18 17 22 22 Si 1.86799 * 119.99890 * 194.97703 * 20 18 17 23 23 H 1.48501 * 109.47318 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47414 * 120.00229 * 22 20 18 25 25 H 1.48503 * 109.47126 * 240.00060 * 22 20 18 26 26 C 1.38230 * 119.94645 * 35.88403 * 13 12 10 27 27 H 1.08997 * 109.47328 * 297.38671 * 1 2 3 28 28 H 1.08997 * 109.47401 * 57.38753 * 1 2 3 29 29 H 1.09002 * 109.47116 * 177.38853 * 1 2 3 30 30 H 1.09004 * 109.87432 * 123.93279 * 4 2 1 31 31 H 1.08996 * 109.87624 * 2.78051 * 4 2 1 32 32 H 1.09006 * 110.61505 * 281.55845 * 6 5 4 33 33 H 1.09001 * 110.75868 * 158.62886 * 6 5 4 34 34 H 0.96999 * 119.99855 * 340.83901 * 9 7 2 35 35 H 0.97001 * 120.00070 * 355.48762 * 12 10 9 36 36 H 1.07993 * 119.78730 * 0.02562 * 14 13 12 37 37 H 1.08004 * 119.84082 * 180.02562 * 15 14 13 38 38 H 1.07998 * 120.06126 * 180.02562 * 16 15 14 39 39 H 0.97002 * 120.00533 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.16133 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0693 -0.7782 -1.2159 5 8 2.7955 -1.9110 -0.7103 6 6 3.2659 -1.5561 0.6078 7 6 2.0718 -0.7816 1.2216 8 1 1.3199 -1.4693 1.6087 9 7 2.5267 0.1357 2.2694 10 6 2.6676 -0.3041 3.5355 11 8 2.4168 -1.4622 3.8082 12 7 3.0865 0.5396 4.4993 13 6 3.1425 0.1096 5.8300 14 6 2.8386 0.9960 6.8606 15 6 2.8904 0.5809 8.1807 16 6 3.2426 -0.7139 8.4891 17 6 3.5523 -1.6207 7.4582 18 6 3.9155 -2.9520 7.7670 19 1 4.5187 -3.5215 7.0754 20 6 3.4885 -3.5335 8.9660 21 7 2.5294 -2.9751 9.6588 22 14 4.2879 -5.1071 9.5775 23 1 5.3385 -5.5337 8.6187 24 1 4.9002 -4.8664 10.9087 25 1 3.2599 -6.1728 9.6910 26 6 3.5050 -1.1925 6.1197 27 1 -0.3634 0.4727 0.9124 28 1 -0.3634 0.5538 -0.8656 29 1 -0.3633 -1.0266 -0.0468 30 1 2.7351 -0.1410 -1.7980 31 1 1.2400 -1.1166 -1.8368 32 1 4.1456 -0.9158 0.5419 33 1 3.4857 -2.4491 1.1929 34 1 2.7264 1.0596 2.0518 35 1 3.3491 1.4450 4.2707 36 1 2.5601 2.0133 6.6285 37 1 2.6525 1.2761 8.9723 38 1 3.2812 -1.0331 9.5200 39 1 2.2336 -3.3779 10.4901 40 1 3.7448 -1.8794 5.3215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931687855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:41 Heat of formation + Delta-G solvation = -76.512605 kcal Electronic energy + Delta-G solvation = -22654.280094 eV Core-core repulsion = 19239.691865 eV Total energy + Delta-G solvation = -3414.588229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68501 -40.46160 -39.01419 -36.27407 -35.83498 -34.83133 -33.68021 -31.72689 -30.44250 -28.99748 -27.24795 -27.15819 -24.29979 -22.99154 -22.63141 -21.93305 -21.45310 -19.62269 -19.21891 -17.96887 -17.35579 -17.09155 -16.69615 -16.52499 -16.36137 -15.92641 -15.63038 -15.19080 -14.93200 -14.73598 -14.64962 -14.03364 -13.59562 -13.57933 -13.41337 -13.16721 -13.13738 -12.83037 -12.57818 -12.35758 -12.19585 -12.01511 -11.89416 -11.81570 -11.56582 -11.31438 -11.02196 -10.79281 -10.66110 -10.12622 -9.36468 -8.69054 -8.59166 -6.35699 0.93973 1.04622 1.36237 1.48762 1.52047 1.57732 2.13919 2.22311 2.75256 2.92440 3.28468 3.37113 3.74830 3.78508 3.84004 4.03462 4.18876 4.44056 4.49777 4.66759 4.69387 4.72149 4.73671 4.86438 4.94186 5.01872 5.07372 5.13256 5.16321 5.21754 5.28981 5.34984 5.40037 5.73263 5.83886 5.84868 6.07771 6.14718 6.18740 6.38806 6.71512 6.96497 7.03186 7.09717 7.58917 8.35611 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.003636 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.000664 B = 7699.726212 C = 8611.199056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.118 0.882 4 C 0.046 3.954 5 O -0.396 6.396 6 C 0.037 3.963 7 C 0.135 3.865 8 H 0.074 0.926 9 N -0.712 5.712 10 C 0.694 3.306 11 O -0.616 6.616 12 N -0.666 5.666 13 C 0.172 3.828 14 C -0.248 4.248 15 C -0.092 4.092 16 C -0.200 4.200 17 C 0.086 3.914 18 C -0.501 4.501 19 H 0.063 0.937 20 C 0.034 3.966 21 N -0.826 5.826 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.256 1.256 25 H -0.266 1.266 26 C -0.236 4.236 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.417 0.583 35 H 0.420 0.580 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.288 0.712 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 10.731 -16.994 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 H 0.136 0.864 4 C -0.031 4.031 5 O -0.315 6.315 6 C -0.041 4.041 7 C 0.028 3.972 8 H 0.093 0.907 9 N -0.370 5.370 10 C 0.394 3.606 11 O -0.495 6.495 12 N -0.315 5.315 13 C 0.079 3.921 14 C -0.270 4.270 15 C -0.111 4.111 16 C -0.220 4.220 17 C 0.084 3.916 18 C -0.531 4.531 19 H 0.081 0.919 20 C -0.180 4.180 21 N -0.453 5.453 22 Si 0.804 3.196 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.191 1.191 26 C -0.258 4.258 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.255 0.745 35 H 0.257 0.743 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.705 9.478 -16.739 19.311 hybrid contribution 0.375 -0.119 0.468 0.612 sum -1.329 9.359 -16.271 18.817 Atomic orbital electron populations 1.21828 0.92695 1.02348 1.03102 1.22751 0.98030 1.01042 0.92013 0.86384 1.23494 0.96546 0.87452 0.95566 1.88892 1.72774 1.38848 1.30983 1.23901 0.96952 1.00039 0.83219 1.22407 0.95882 0.91673 0.87235 0.90739 1.44697 1.72550 1.14805 1.04956 1.16221 0.78215 0.84559 0.81572 1.90989 1.57869 1.18758 1.81850 1.42249 1.68565 1.16220 1.04472 1.17278 0.98906 0.93597 0.82360 1.20451 1.15180 0.99855 0.91490 1.20837 0.98923 0.95308 0.96005 1.21375 1.08387 0.93211 0.99000 1.17860 0.89028 0.93633 0.91115 1.19797 1.30739 0.98350 1.04198 0.91863 1.26724 0.93355 1.02536 0.95350 1.69868 1.21330 1.40194 1.13882 0.85149 0.78962 0.76592 0.78893 1.18708 1.18051 1.19086 1.21051 1.12788 0.96444 0.95535 0.92677 0.89557 0.93082 0.89929 0.88197 0.90366 0.90966 0.74504 0.74254 0.84899 0.85875 0.87574 0.90137 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.92 71.98 0.64 -1.24 16 2 C -0.12 -1.65 3.38 -9.80 -0.03 -1.69 16 3 H 0.12 0.98 7.73 -2.38 -0.02 0.96 16 4 C 0.05 0.67 7.37 72.36 0.53 1.21 16 5 O -0.40 -9.52 11.52 -148.98 -1.72 -11.24 16 6 C 0.04 0.92 7.41 72.66 0.54 1.46 16 7 C 0.13 3.12 2.96 46.29 0.14 3.25 16 8 H 0.07 2.25 7.45 -2.38 -0.02 2.23 16 9 N -0.71 -16.36 5.23 -451.60 -2.36 -18.72 16 10 C 0.69 24.70 8.40 179.06 1.50 26.20 16 11 O -0.62 -29.71 13.56 -4.00 -0.05 -29.77 16 12 N -0.67 -22.45 5.34 -317.34 -1.69 -24.14 16 13 C 0.17 7.76 6.28 38.09 0.24 8.00 16 14 C -0.25 -10.33 9.97 22.58 0.23 -10.11 16 15 C -0.09 -4.21 10.02 22.20 0.22 -3.99 16 16 C -0.20 -10.89 8.69 22.75 0.20 -10.69 16 17 C 0.09 5.06 5.58 -21.31 -0.12 4.94 16 18 C -0.50 -29.69 9.06 23.46 0.21 -29.48 16 19 H 0.06 3.74 7.89 -2.91 -0.02 3.72 16 20 C 0.03 1.86 5.20 85.25 0.44 2.30 16 21 N -0.83 -45.51 10.81 21.82 0.24 -45.28 16 22 Si 0.98 41.02 29.59 68.60 2.03 43.05 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 26 C -0.24 -12.98 8.43 22.85 0.19 -12.78 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 1.22 7.69 -2.39 -0.02 1.20 16 32 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.42 5.78 8.36 -92.71 -0.78 5.00 16 35 H 0.42 9.65 8.84 -92.71 -0.82 8.83 16 36 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 38 H 0.11 6.01 6.08 -2.91 -0.02 5.99 16 39 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 40 H 0.09 5.17 6.27 -2.91 -0.02 5.15 16 Total: -1.00 -76.41 332.59 0.86 -75.55 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.52 Total: 33.16 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.93 Total: -22.62 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -3.82 Total: -88.14 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.77 Total: -41.00 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -76.41 0.86 -75.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.962 kcal (2) G-P(sol) polarization free energy of solvation -76.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds