Wall clock time and date at job start Tue Mar 31 2020 06:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47181 * 2 1 4 4 C 1.50705 * 109.46849 * 240.00688 * 2 1 3 5 5 H 1.08006 * 119.99352 * 239.99613 * 4 2 1 6 6 C 1.37876 * 120.00343 * 59.99384 * 4 2 1 7 7 N 1.31514 * 119.99882 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99925 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47529 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47146 * 120.00180 * 8 6 4 11 11 H 1.48498 * 109.47421 * 240.00107 * 8 6 4 12 12 N 1.46493 * 109.47419 * 120.00383 * 2 1 3 13 13 C 1.46498 * 120.00144 * 60.00119 * 12 2 1 14 14 C 1.34780 * 119.99869 * 239.99846 * 12 2 1 15 15 O 1.21593 * 119.99729 * 355.39872 * 14 12 2 16 16 C 1.47522 * 120.00120 * 175.40427 * 14 12 2 17 17 C 1.39983 * 120.60060 * 47.95212 * 16 14 12 18 18 C 1.38339 * 118.35150 * 179.76363 * 17 16 14 19 19 C 1.38350 * 119.45505 * 0.56035 * 18 17 16 20 20 C 1.50700 * 119.40654 * 179.70202 * 19 18 17 21 21 C 1.53008 * 117.50037 * 343.72135 * 20 19 18 22 22 C 1.53007 * 117.49922 * 275.06506 * 20 19 18 23 23 N 1.31880 * 121.18691 * 359.67791 * 19 18 17 24 24 C 1.32229 * 121.80328 * 0.02562 * 23 19 18 25 25 O 1.35431 * 119.80373 * 179.97438 * 24 23 19 26 26 H 1.09006 * 109.46462 * 299.99420 * 1 2 3 27 27 H 1.09001 * 109.46715 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47611 * 60.00027 * 1 2 3 29 29 H 0.96999 * 119.99719 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47282 * 95.16599 * 13 12 2 31 31 H 1.09008 * 109.46884 * 215.16408 * 13 12 2 32 32 H 1.08999 * 109.47204 * 335.15786 * 13 12 2 33 33 H 1.08004 * 120.82347 * 0.02562 * 17 16 14 34 34 H 1.07999 * 120.27518 * 180.25961 * 18 17 16 35 35 H 1.09005 * 115.55475 * 129.39442 * 20 19 18 36 36 H 1.09002 * 117.49530 * 0.02562 * 21 20 19 37 37 H 1.09000 * 117.49840 * 145.02171 * 21 20 19 38 38 H 1.09003 * 117.49467 * 214.98343 * 22 20 19 39 39 H 1.09000 * 117.49727 * 359.96990 * 22 20 19 40 40 H 0.96696 * 114.00074 * 270.02156 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 3.1453 -2.2875 -3.6041 10 1 1.1658 -1.5865 -4.8162 11 1 3.1463 -0.1872 -4.8167 12 7 2.0184 -0.6906 1.1960 13 6 1.6645 -2.0932 1.4278 14 6 2.7933 -0.0357 2.0832 15 8 3.1561 1.1013 1.8504 16 6 3.2013 -0.6982 3.3365 17 6 3.7235 -1.9968 3.3188 18 6 4.0959 -2.5716 4.5208 19 6 3.9324 -1.8589 5.6953 20 6 4.3321 -2.4888 7.0047 21 6 4.5405 -4.0044 7.0252 22 6 3.3085 -3.3918 7.6959 23 7 3.4336 -0.6381 5.6895 24 6 3.0675 -0.0403 4.5683 25 8 2.5593 1.2144 4.6095 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 0.7092 1.1619 -3.4844 30 1 2.4609 -2.7357 1.0523 31 1 1.5341 -2.2632 2.4966 32 1 0.7352 -2.3243 0.9072 33 1 3.8369 -2.5350 2.3893 34 1 4.5062 -3.5704 4.5427 35 1 4.9789 -1.8832 7.6397 36 1 4.3889 -4.5459 6.0914 37 1 5.3241 -4.3960 7.6738 38 1 3.2821 -3.3805 8.7856 39 1 2.3458 -3.5299 7.2037 40 1 1.5982 1.2464 4.7102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931939662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:50 Heat of formation + Delta-G solvation = -2.938918 kcal Electronic energy + Delta-G solvation = -23125.367163 eV Core-core repulsion = 19713.969329 eV Total energy + Delta-G solvation = -3411.397834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87562 -38.86703 -37.77767 -36.32400 -35.33428 -33.29943 -32.28721 -30.35943 -29.13233 -26.40673 -25.36884 -25.09543 -23.59565 -22.49311 -21.82661 -20.91894 -19.01323 -18.28061 -17.13818 -16.87285 -16.49599 -16.06945 -15.61784 -15.08363 -15.02412 -14.53921 -14.28306 -13.70096 -13.55241 -13.08736 -12.71295 -12.57174 -12.26395 -12.22176 -11.78122 -11.65442 -11.64426 -11.56997 -11.10804 -10.87310 -10.84933 -10.77002 -10.73171 -10.29239 -10.22094 -9.83809 -9.68736 -9.20557 -9.04413 -8.71409 -8.46343 -7.66888 -6.10825 -4.18969 0.72462 1.10046 3.11340 3.23747 3.29339 3.32197 3.34642 3.49215 3.84174 3.87422 4.23996 4.36762 4.53890 4.60201 4.74618 4.89561 4.93716 5.00735 5.20659 5.31863 5.36586 5.45641 5.52584 5.64253 5.72248 5.78268 5.91977 5.97015 6.00660 6.19149 6.36195 6.70097 6.75801 6.99005 7.35252 7.44209 7.55595 7.66701 7.84521 7.96353 8.14161 8.42916 8.78065 8.95942 9.47654 10.94624 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026119 B = 0.003926 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.754638 B = 7129.614705 C = 7684.295774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.586 5.586 13 C 0.084 3.916 14 C 0.549 3.451 15 O -0.526 6.526 16 C -0.183 4.183 17 C -0.030 4.030 18 C -0.187 4.187 19 C 0.190 3.810 20 C -0.109 4.109 21 C -0.172 4.172 22 C -0.161 4.161 23 N -0.502 5.502 24 C 0.358 3.642 25 O -0.463 6.463 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.095 0.905 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 -11.288 16.917 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.317 5.317 13 C -0.059 4.059 14 C 0.334 3.666 15 O -0.403 6.403 16 C -0.190 4.190 17 C -0.056 4.056 18 C -0.207 4.207 19 C 0.052 3.948 20 C -0.128 4.128 21 C -0.209 4.209 22 C -0.198 4.198 23 N -0.221 5.221 24 C 0.178 3.822 25 O -0.270 6.270 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.766 -9.857 17.282 20.087 hybrid contribution -0.076 -0.994 -1.630 1.911 sum 2.690 -10.851 15.652 19.235 Atomic orbital electron populations 1.22109 0.98072 0.99410 1.00953 1.19002 0.90869 0.94598 0.79729 0.91729 1.21333 1.31867 1.13011 0.90205 0.92216 1.24896 0.94923 0.94972 0.99002 1.69883 1.36357 1.22558 1.23732 0.86426 0.78594 0.79572 0.82711 1.19827 1.20925 1.20871 1.48200 1.48636 1.11554 1.23344 1.21708 1.01588 0.83218 0.99430 1.17827 0.79981 0.86079 0.82743 1.90797 1.54603 1.18021 1.76844 1.21360 1.06153 0.95577 0.95900 1.21879 0.92053 0.92456 0.99213 1.21848 1.04178 1.02445 0.92259 1.20130 0.92601 0.88461 0.93648 1.20806 1.04165 0.92566 0.95288 1.23131 1.00570 0.93916 1.03296 1.22986 0.94458 1.02288 1.00089 1.66872 1.13815 1.10554 1.30815 1.19010 0.92678 0.84160 0.86334 1.84793 1.27088 1.20457 1.94650 0.96966 0.95061 0.88636 0.92679 0.93278 0.93191 0.90366 0.83343 0.83933 0.85905 0.88036 0.87943 0.88101 0.88545 0.74145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.96 37.16 0.33 -3.09 16 2 C 0.26 6.50 2.63 -69.08 -0.18 6.32 16 3 H 0.06 1.90 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.01 8.37 -34.44 -0.29 -14.30 16 5 H 0.06 1.56 7.65 -52.48 -0.40 1.16 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.59 -12.35 2.75 -176.50 -0.49 -12.84 16 13 C 0.08 1.37 8.27 59.85 0.49 1.87 16 14 C 0.55 11.76 6.99 -12.47 -0.09 11.67 16 15 O -0.53 -13.60 15.86 -4.30 -0.07 -13.66 16 16 C -0.18 -3.14 4.94 -104.69 -0.52 -3.66 16 17 C -0.03 -0.41 7.88 -38.89 -0.31 -0.72 16 18 C -0.19 -2.12 9.34 -39.50 -0.37 -2.48 16 19 C 0.19 2.36 6.46 -82.53 -0.53 1.83 16 20 C -0.11 -1.01 6.21 -91.76 -0.57 -1.58 16 21 C -0.17 -1.13 9.79 -26.69 -0.26 -1.39 16 22 C -0.16 -1.19 10.24 -26.69 -0.27 -1.46 16 23 N -0.50 -7.65 10.28 -9.21 -0.09 -7.75 16 24 C 0.36 6.00 7.75 -16.61 -0.13 5.87 16 25 O -0.46 -7.77 12.60 -27.56 -0.35 -8.12 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 28 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.05 0.73 7.06 -51.93 -0.37 0.37 16 31 H 0.05 0.68 6.24 -51.92 -0.32 0.35 16 32 H 0.08 1.29 6.44 -51.93 -0.33 0.95 16 33 H 0.15 1.83 6.28 -52.48 -0.33 1.50 16 34 H 0.14 1.14 6.22 -52.49 -0.33 0.82 16 35 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.10 0.60 6.37 -51.93 -0.33 0.27 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.40 4.73 9.06 45.56 0.41 5.14 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -33.57 330.76 -7.46 -41.02 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.27 Total: 4.29 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.78 Total: 0.50 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.05 Total: -44.82 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.42 Total: -21.78 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.57 -7.46 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931939662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.085 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds