Wall clock time and date at job start Tue Mar 31 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47181 * 2 1 4 4 C 1.50705 * 109.46849 * 240.00688 * 2 1 3 5 5 H 1.08006 * 119.99352 * 239.99613 * 4 2 1 6 6 C 1.37876 * 120.00343 * 59.99384 * 4 2 1 7 7 N 1.31514 * 119.99882 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99925 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47529 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47146 * 120.00180 * 8 6 4 11 11 H 1.48498 * 109.47421 * 240.00107 * 8 6 4 12 12 N 1.46493 * 109.47419 * 120.00383 * 2 1 3 13 13 C 1.46498 * 120.00144 * 60.00119 * 12 2 1 14 14 C 1.34780 * 119.99869 * 239.99846 * 12 2 1 15 15 O 1.21593 * 119.99729 * 355.39872 * 14 12 2 16 16 C 1.47522 * 120.00120 * 175.40427 * 14 12 2 17 17 C 1.39983 * 120.60060 * 47.95212 * 16 14 12 18 18 C 1.38339 * 118.35150 * 179.76363 * 17 16 14 19 19 C 1.38350 * 119.45505 * 0.56035 * 18 17 16 20 20 C 1.50700 * 119.40654 * 179.70202 * 19 18 17 21 21 C 1.53008 * 117.50037 * 343.72135 * 20 19 18 22 22 C 1.53007 * 117.49922 * 275.06506 * 20 19 18 23 23 N 1.31880 * 121.18691 * 359.67791 * 19 18 17 24 24 C 1.32229 * 121.80328 * 0.02562 * 23 19 18 25 25 O 1.35431 * 119.80373 * 179.97438 * 24 23 19 26 26 H 1.09006 * 109.46462 * 299.99420 * 1 2 3 27 27 H 1.09001 * 109.46715 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47611 * 60.00027 * 1 2 3 29 29 H 0.96999 * 119.99719 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47282 * 95.16599 * 13 12 2 31 31 H 1.09008 * 109.46884 * 215.16408 * 13 12 2 32 32 H 1.08999 * 109.47204 * 335.15786 * 13 12 2 33 33 H 1.08004 * 120.82347 * 0.02562 * 17 16 14 34 34 H 1.07999 * 120.27518 * 180.25961 * 18 17 16 35 35 H 1.09005 * 115.55475 * 129.39442 * 20 19 18 36 36 H 1.09002 * 117.49530 * 0.02562 * 21 20 19 37 37 H 1.09000 * 117.49840 * 145.02171 * 21 20 19 38 38 H 1.09003 * 117.49467 * 214.98343 * 22 20 19 39 39 H 1.09000 * 117.49727 * 359.96990 * 22 20 19 40 40 H 0.96696 * 114.00074 * 270.02156 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 3.1453 -2.2875 -3.6041 10 1 1.1658 -1.5865 -4.8162 11 1 3.1463 -0.1872 -4.8167 12 7 2.0184 -0.6906 1.1960 13 6 1.6645 -2.0932 1.4278 14 6 2.7933 -0.0357 2.0832 15 8 3.1561 1.1013 1.8504 16 6 3.2013 -0.6982 3.3365 17 6 3.7235 -1.9968 3.3188 18 6 4.0959 -2.5716 4.5208 19 6 3.9324 -1.8589 5.6953 20 6 4.3321 -2.4888 7.0047 21 6 4.5405 -4.0044 7.0252 22 6 3.3085 -3.3918 7.6959 23 7 3.4336 -0.6381 5.6895 24 6 3.0675 -0.0403 4.5683 25 8 2.5593 1.2144 4.6095 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 0.7092 1.1619 -3.4844 30 1 2.4609 -2.7357 1.0523 31 1 1.5341 -2.2632 2.4966 32 1 0.7352 -2.3243 0.9072 33 1 3.8369 -2.5350 2.3893 34 1 4.5062 -3.5704 4.5427 35 1 4.9789 -1.8832 7.6397 36 1 4.3889 -4.5459 6.0914 37 1 5.3241 -4.3960 7.6738 38 1 3.2821 -3.3805 8.7856 39 1 2.3458 -3.5299 7.2037 40 1 1.5982 1.2464 4.7102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931939662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:49 Heat of formation + Delta-G solvation = -27.743096 kcal Electronic energy + Delta-G solvation = -23126.442753 eV Core-core repulsion = 19713.969329 eV Total energy + Delta-G solvation = -3412.473424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.05770 -40.34650 -38.83407 -37.28285 -37.10583 -35.00437 -33.70661 -31.69050 -30.73022 -27.83824 -27.32051 -26.32491 -24.63711 -23.43372 -22.93047 -22.03299 -20.61107 -19.47211 -18.62584 -18.23967 -17.90162 -17.45915 -17.21364 -16.37255 -16.11184 -15.95307 -15.63540 -15.00205 -14.84653 -14.49933 -14.18602 -13.90468 -13.74924 -13.47119 -13.13324 -12.98261 -12.92381 -12.86961 -12.71758 -12.62076 -12.23804 -12.20577 -12.11862 -11.60053 -11.32818 -11.20325 -11.05944 -10.87089 -10.56417 -10.42513 -9.82843 -9.39194 -8.15449 -6.32171 -0.40402 0.03762 1.41245 1.43327 1.54285 1.69836 2.13946 2.35710 2.46997 2.48186 3.04463 3.13036 3.30573 3.57401 3.72595 3.92191 3.97621 4.08582 4.20394 4.34424 4.38654 4.52652 4.62401 4.73389 4.80055 4.82546 4.86182 4.93473 4.97716 5.02840 5.11123 5.23058 5.31260 5.40385 5.44102 5.58617 5.64396 6.00113 6.13653 6.45296 6.69753 6.75361 6.78523 7.23736 7.42093 8.89382 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026119 B = 0.003926 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.754638 B = 7129.614705 C = 7684.295774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.589 5.589 13 C 0.081 3.919 14 C 0.547 3.453 15 O -0.587 6.587 16 C -0.208 4.208 17 C -0.023 4.023 18 C -0.170 4.170 19 C 0.193 3.807 20 C -0.136 4.136 21 C -0.148 4.148 22 C -0.159 4.159 23 N -0.520 5.520 24 C 0.345 3.655 25 O -0.487 6.487 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.165 0.835 34 H 0.187 0.813 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 -15.347 18.147 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.026 0.974 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.319 5.319 13 C -0.061 4.061 14 C 0.334 3.666 15 O -0.469 6.469 16 C -0.215 4.215 17 C -0.049 4.049 18 C -0.189 4.189 19 C 0.054 3.946 20 C -0.154 4.154 21 C -0.185 4.185 22 C -0.196 4.196 23 N -0.239 5.239 24 C 0.166 3.834 25 O -0.296 6.296 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.182 0.818 34 H 0.204 0.796 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 3.592 -13.969 18.538 23.488 hybrid contribution -0.316 0.235 -1.868 1.909 sum 3.276 -13.734 16.670 21.846 Atomic orbital electron populations 1.21891 0.96776 1.00356 1.00093 1.18608 0.91789 0.92191 0.81431 0.97429 1.21598 1.31933 1.13109 0.90934 0.91795 1.25757 0.95057 0.95636 1.02108 1.70031 1.37369 1.23912 1.24414 0.85378 0.78213 0.78493 0.78754 1.18608 1.19932 1.21401 1.48152 1.48278 1.13381 1.22064 1.21976 1.02120 0.80360 1.01642 1.18443 0.78933 0.85417 0.83784 1.90749 1.56954 1.20853 1.78309 1.20999 1.09515 0.97381 0.93579 1.22080 0.91067 0.90831 1.00927 1.22247 1.02287 1.03799 0.90540 1.20850 0.90482 0.87485 0.95735 1.20889 1.05990 0.94309 0.94253 1.23305 1.00114 0.91172 1.03905 1.23083 0.94461 1.01174 1.00885 1.66968 1.14822 1.12126 1.29977 1.19120 0.93336 0.84125 0.86825 1.84734 1.28594 1.21457 1.94802 0.96059 0.93030 0.91224 0.92635 0.91390 0.90103 0.90450 0.81799 0.79612 0.86010 0.86713 0.86014 0.86843 0.88967 0.72508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.96 71.98 0.64 -5.69 16 2 C 0.26 13.66 2.63 44.25 0.12 13.78 16 3 H 0.01 0.49 6.91 -2.39 -0.02 0.47 16 4 C -0.54 -28.98 8.37 25.60 0.21 -28.76 16 5 H 0.06 3.31 7.65 -2.91 -0.02 3.29 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 N -0.59 -25.13 2.75 -830.58 -2.29 -27.42 16 13 C 0.08 2.48 8.27 127.77 1.06 3.53 16 14 C 0.55 24.24 6.99 86.69 0.61 24.84 16 15 O -0.59 -32.46 15.86 5.15 0.08 -32.37 16 16 C -0.21 -7.10 4.94 -19.91 -0.10 -7.20 16 17 C -0.02 -0.58 7.88 22.72 0.18 -0.40 16 18 C -0.17 -3.16 9.34 22.32 0.21 -2.96 16 19 C 0.19 4.29 6.46 42.58 0.28 4.56 16 20 C -0.14 -2.07 6.21 -11.53 -0.07 -2.14 16 21 C -0.15 -1.21 9.79 30.62 0.30 -0.91 16 22 C -0.16 -1.78 10.24 30.62 0.31 -1.46 16 23 N -0.52 -15.44 10.28 -296.06 -3.04 -18.48 16 24 C 0.34 11.72 7.75 85.13 0.66 12.37 16 25 O -0.49 -17.24 12.60 -78.11 -0.98 -18.22 16 26 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.05 2.19 6.66 -2.39 -0.02 2.18 16 28 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.07 1.83 7.06 -2.39 -0.02 1.81 16 31 H 0.08 1.98 6.24 -2.38 -0.01 1.96 16 32 H 0.08 2.38 6.44 -2.39 -0.02 2.37 16 33 H 0.16 3.48 6.28 -2.91 -0.02 3.46 16 34 H 0.19 1.84 6.22 -2.91 -0.02 1.82 16 35 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.11 0.66 6.37 -2.39 -0.02 0.64 16 37 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.41 10.63 9.06 -74.06 -0.67 9.96 16 Total: -1.00 -77.62 330.76 1.30 -76.32 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.41 Total: 17.41 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 4.85 Total: 10.77 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -5.09 Total: -98.59 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.90 Total: -50.59 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -77.62 1.30 -76.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931939662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.578 kcal (2) G-P(sol) polarization free energy of solvation -77.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds