Wall clock time and date at job start Tue Mar 31 2020 06:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46858 * 2 1 4 4 C 1.50700 * 109.46925 * 119.99363 * 2 1 3 5 5 H 1.07995 * 119.99667 * 119.99725 * 4 2 1 6 6 C 1.37872 * 120.00175 * 300.00181 * 4 2 1 7 7 N 1.31508 * 120.00299 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46948 * 89.99765 * 8 6 4 10 10 H 1.48493 * 109.47446 * 210.00184 * 8 6 4 11 11 H 1.48504 * 109.46989 * 330.00593 * 8 6 4 12 12 N 1.46497 * 109.47157 * 239.99564 * 2 1 3 13 13 C 1.46498 * 120.00237 * 300.00007 * 12 2 1 14 14 C 1.34781 * 119.99844 * 119.99871 * 12 2 1 15 15 O 1.21589 * 119.99919 * 4.72216 * 14 12 2 16 16 C 1.47521 * 120.00006 * 184.71342 * 14 12 2 17 17 C 1.39992 * 120.59738 * 314.22916 * 16 14 12 18 18 C 1.38336 * 118.34727 * 179.97438 * 17 16 14 19 19 C 1.38356 * 119.45890 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.40483 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.50120 * 343.74353 * 20 19 18 22 22 C 1.52995 * 117.50189 * 275.08042 * 20 19 18 23 23 N 1.31879 * 121.18909 * 359.97087 * 19 18 17 24 24 C 1.32246 * 121.79495 * 359.74829 * 23 19 18 25 25 O 1.35424 * 119.79746 * 180.28802 * 24 23 19 26 26 H 1.08998 * 109.47676 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47669 * 300.00536 * 1 2 3 28 28 H 1.09005 * 109.47198 * 60.00213 * 1 2 3 29 29 H 0.97000 * 120.00301 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47154 * 275.15879 * 13 12 2 31 31 H 1.09000 * 109.47028 * 155.15254 * 13 12 2 32 32 H 1.09008 * 109.47101 * 35.15720 * 13 12 2 33 33 H 1.07994 * 120.82398 * 359.97438 * 17 16 14 34 34 H 1.07998 * 120.27161 * 179.97438 * 18 17 16 35 35 H 1.09006 * 115.54730 * 129.41319 * 20 19 18 36 36 H 1.08995 * 117.49249 * 0.02562 * 21 20 19 37 37 H 1.09005 * 117.49804 * 145.01866 * 21 20 19 38 38 H 1.08997 * 117.50855 * 214.98032 * 22 20 19 39 39 H 1.09006 * 117.49900 * 359.97438 * 22 20 19 40 40 H 0.96702 * 114.00103 * 270.25028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.6296 -0.5456 4.4124 10 1 1.3430 -0.9489 5.1121 11 1 2.4858 -2.5659 3.7121 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1578 1.1004 -1.8496 16 6 3.1990 -0.6973 -3.3378 17 6 3.6769 -2.0131 -3.3272 18 6 4.0440 -2.5883 -4.5306 19 6 3.9302 -1.8548 -5.6982 20 6 4.3309 -2.4824 -7.0083 21 6 5.1914 -3.7463 -6.9523 22 6 5.8086 -2.4188 -7.3994 23 7 3.4772 -0.6163 -5.6852 24 6 3.1077 -0.0212 -4.5635 25 8 2.6429 1.2503 -4.5978 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7080 1.1610 3.4843 30 1 2.3639 -2.7373 -0.8949 31 1 1.7131 -2.3086 -2.4953 32 1 0.6529 -2.2774 -1.0658 33 1 3.7571 -2.5653 -2.4026 34 1 4.4171 -3.6014 -4.5584 35 1 3.5948 -2.4097 -7.8090 36 1 5.4672 -4.1240 -5.9678 37 1 5.0216 -4.5050 -7.7164 38 1 6.0450 -2.3047 -8.4573 39 1 6.4910 -1.9226 -6.7092 40 1 3.3306 1.9233 -4.5017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931939664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:52 Heat of formation + Delta-G solvation = -2.983863 kcal Electronic energy + Delta-G solvation = -23102.245132 eV Core-core repulsion = 19690.845349 eV Total energy + Delta-G solvation = -3411.399783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88940 -38.87238 -37.75336 -36.32582 -35.32517 -33.32828 -32.27881 -30.35407 -29.10502 -26.41671 -25.35409 -25.09242 -23.58798 -22.49123 -21.80932 -20.93185 -19.00153 -18.25568 -17.14402 -16.92870 -16.46398 -15.90423 -15.62962 -15.22834 -15.04723 -14.47745 -14.24092 -13.81110 -13.54636 -13.03254 -12.71064 -12.53100 -12.32607 -12.17740 -11.77425 -11.68790 -11.59958 -11.57767 -11.08346 -10.86223 -10.84716 -10.75109 -10.71464 -10.28858 -10.19281 -9.80920 -9.71711 -9.20562 -9.01175 -8.74755 -8.45334 -7.66010 -6.09637 -4.18076 0.71196 1.09533 3.09976 3.25303 3.29346 3.32018 3.33390 3.56826 3.73945 3.97949 4.24929 4.37396 4.54055 4.60066 4.75428 4.88081 4.92043 5.00124 5.21535 5.32293 5.36942 5.47500 5.52882 5.64169 5.72792 5.78641 5.95472 5.98187 6.00105 6.21662 6.36330 6.74356 6.80839 7.02436 7.36169 7.46570 7.57848 7.67768 7.85299 7.97765 8.15225 8.44029 8.77314 8.94732 9.48287 10.95720 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.003893 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.050219 B = 7190.410801 C = 7761.060606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.582 5.582 13 C 0.079 3.921 14 C 0.556 3.444 15 O -0.541 6.541 16 C -0.186 4.186 17 C -0.030 4.030 18 C -0.189 4.189 19 C 0.191 3.809 20 C -0.109 4.109 21 C -0.172 4.172 22 C -0.161 4.161 23 N -0.502 5.502 24 C 0.361 3.639 25 O -0.470 6.470 26 H 0.031 0.969 27 H 0.095 0.905 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -9.727 -16.484 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.065 4.065 14 C 0.342 3.658 15 O -0.419 6.419 16 C -0.193 4.193 17 C -0.056 4.056 18 C -0.209 4.209 19 C 0.053 3.947 20 C -0.128 4.128 21 C -0.209 4.209 22 C -0.199 4.199 23 N -0.221 5.221 24 C 0.181 3.819 25 O -0.278 6.278 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 5.809 -8.724 -16.969 19.945 hybrid contribution 0.651 -0.705 1.718 1.968 sum 6.460 -9.429 -15.250 19.058 Atomic orbital electron populations 1.22104 0.98052 0.99477 1.01024 1.18996 0.90948 0.94527 0.79600 0.91722 1.21284 1.31955 1.13030 0.90216 0.92275 1.24891 0.94907 0.94987 0.98972 1.69874 1.36192 1.22619 1.23825 0.86481 0.78661 0.79821 0.82329 1.20590 1.21096 1.19925 1.48166 1.48177 1.11636 1.23243 1.21818 1.01930 0.83240 0.99468 1.17763 0.79671 0.85939 0.82474 1.90732 1.55575 1.18295 1.77344 1.21380 1.05731 0.96652 0.95512 1.21907 0.91963 0.92495 0.99207 1.21849 1.04641 1.02028 0.92380 1.20141 0.92682 0.88275 0.93647 1.20803 0.95302 1.01132 0.95577 1.23130 1.03113 0.91074 1.03587 1.22988 0.94196 1.00278 1.02410 1.66901 1.12982 1.11712 1.30529 1.18993 0.89867 0.86916 0.86116 1.84649 1.36305 1.12144 1.94707 0.95043 0.88640 0.96821 0.92623 0.92802 0.92522 0.90900 0.83294 0.83920 0.85878 0.88050 0.87919 0.88077 0.88553 0.73204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.93 37.16 0.33 -3.25 16 2 C 0.26 6.64 2.63 -69.08 -0.18 6.46 16 3 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.53 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.06 1.55 7.50 -52.49 -0.39 1.16 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.58 -12.62 2.75 -176.50 -0.49 -13.10 16 13 C 0.08 1.35 8.33 59.85 0.50 1.84 16 14 C 0.56 11.95 7.04 -12.47 -0.09 11.86 16 15 O -0.54 -13.41 15.76 -6.30 -0.10 -13.51 16 16 C -0.19 -3.20 5.05 -104.69 -0.53 -3.72 16 17 C -0.03 -0.40 7.61 -38.89 -0.30 -0.70 16 18 C -0.19 -2.13 9.34 -39.50 -0.37 -2.49 16 19 C 0.19 2.37 6.46 -82.53 -0.53 1.83 16 20 C -0.11 -1.01 6.21 -91.77 -0.57 -1.58 16 21 C -0.17 -1.13 9.79 -26.69 -0.26 -1.39 16 22 C -0.16 -1.23 10.24 -26.69 -0.27 -1.50 16 23 N -0.50 -7.66 10.28 -9.21 -0.09 -7.75 16 24 C 0.36 6.07 7.74 -16.61 -0.13 5.94 16 25 O -0.47 -7.93 12.53 -29.56 -0.37 -8.31 16 26 H 0.03 0.69 6.70 -51.93 -0.35 0.35 16 27 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 0.85 7.45 -51.93 -0.39 0.46 16 31 H 0.06 0.82 5.36 -51.93 -0.28 0.54 16 32 H 0.07 1.24 6.45 -51.92 -0.33 0.91 16 33 H 0.15 1.82 6.37 -52.49 -0.33 1.49 16 34 H 0.14 1.14 6.21 -52.49 -0.33 0.81 16 35 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.10 0.61 6.37 -51.93 -0.33 0.28 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.41 5.34 9.06 45.56 0.41 5.76 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -32.83 330.01 -7.49 -40.32 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.24 Total: 5.37 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.78 Total: 0.56 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.05 Total: -45.24 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.47 Total: -21.82 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.83 -7.49 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931939664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.339 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds