Wall clock time and date at job start Tue Mar 31 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46858 * 2 1 4 4 C 1.50700 * 109.46925 * 119.99363 * 2 1 3 5 5 H 1.07995 * 119.99667 * 119.99725 * 4 2 1 6 6 C 1.37872 * 120.00175 * 300.00181 * 4 2 1 7 7 N 1.31508 * 120.00299 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46948 * 89.99765 * 8 6 4 10 10 H 1.48493 * 109.47446 * 210.00184 * 8 6 4 11 11 H 1.48504 * 109.46989 * 330.00593 * 8 6 4 12 12 N 1.46497 * 109.47157 * 239.99564 * 2 1 3 13 13 C 1.46498 * 120.00237 * 300.00007 * 12 2 1 14 14 C 1.34781 * 119.99844 * 119.99871 * 12 2 1 15 15 O 1.21589 * 119.99919 * 4.72216 * 14 12 2 16 16 C 1.47521 * 120.00006 * 184.71342 * 14 12 2 17 17 C 1.39992 * 120.59738 * 314.22916 * 16 14 12 18 18 C 1.38336 * 118.34727 * 179.97438 * 17 16 14 19 19 C 1.38356 * 119.45890 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.40483 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.50120 * 343.74353 * 20 19 18 22 22 C 1.52995 * 117.50189 * 275.08042 * 20 19 18 23 23 N 1.31879 * 121.18909 * 359.97087 * 19 18 17 24 24 C 1.32246 * 121.79495 * 359.74829 * 23 19 18 25 25 O 1.35424 * 119.79746 * 180.28802 * 24 23 19 26 26 H 1.08998 * 109.47676 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47669 * 300.00536 * 1 2 3 28 28 H 1.09005 * 109.47198 * 60.00213 * 1 2 3 29 29 H 0.97000 * 120.00301 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47154 * 275.15879 * 13 12 2 31 31 H 1.09000 * 109.47028 * 155.15254 * 13 12 2 32 32 H 1.09008 * 109.47101 * 35.15720 * 13 12 2 33 33 H 1.07994 * 120.82398 * 359.97438 * 17 16 14 34 34 H 1.07998 * 120.27161 * 179.97438 * 18 17 16 35 35 H 1.09006 * 115.54730 * 129.41319 * 20 19 18 36 36 H 1.08995 * 117.49249 * 0.02562 * 21 20 19 37 37 H 1.09005 * 117.49804 * 145.01866 * 21 20 19 38 38 H 1.08997 * 117.50855 * 214.98032 * 22 20 19 39 39 H 1.09006 * 117.49900 * 359.97438 * 22 20 19 40 40 H 0.96702 * 114.00103 * 270.25028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.6296 -0.5456 4.4124 10 1 1.3430 -0.9489 5.1121 11 1 2.4858 -2.5659 3.7121 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1578 1.1004 -1.8496 16 6 3.1990 -0.6973 -3.3378 17 6 3.6769 -2.0131 -3.3272 18 6 4.0440 -2.5883 -4.5306 19 6 3.9302 -1.8548 -5.6982 20 6 4.3309 -2.4824 -7.0083 21 6 5.1914 -3.7463 -6.9523 22 6 5.8086 -2.4188 -7.3994 23 7 3.4772 -0.6163 -5.6852 24 6 3.1077 -0.0212 -4.5635 25 8 2.6429 1.2503 -4.5978 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7080 1.1610 3.4843 30 1 2.3639 -2.7373 -0.8949 31 1 1.7131 -2.3086 -2.4953 32 1 0.6529 -2.2774 -1.0658 33 1 3.7571 -2.5653 -2.4026 34 1 4.4171 -3.6014 -4.5584 35 1 3.5948 -2.4097 -7.8090 36 1 5.4672 -4.1240 -5.9678 37 1 5.0216 -4.5050 -7.7164 38 1 6.0450 -2.3047 -8.4573 39 1 6.4910 -1.9226 -6.7092 40 1 3.3306 1.9233 -4.5017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931939664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:51 Heat of formation + Delta-G solvation = -26.819855 kcal Electronic energy + Delta-G solvation = -23103.278738 eV Core-core repulsion = 19690.845349 eV Total energy + Delta-G solvation = -3412.433389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.07992 -40.34891 -38.82216 -37.31759 -37.08079 -35.02920 -33.72305 -31.69086 -30.73396 -27.87963 -27.33296 -26.33157 -24.63869 -23.44231 -22.94108 -22.04866 -20.62731 -19.43974 -18.64380 -18.28637 -17.95703 -17.32905 -17.12889 -16.56304 -16.20359 -15.80987 -15.67746 -15.05007 -14.86479 -14.50827 -14.16009 -13.92766 -13.77425 -13.48213 -13.12298 -12.99143 -12.94109 -12.86419 -12.73436 -12.66515 -12.25498 -12.20100 -12.11003 -11.56409 -11.33461 -11.22531 -11.12809 -10.85094 -10.56478 -10.40147 -9.84403 -9.40848 -8.15219 -6.32417 -0.42592 0.02556 1.42525 1.43787 1.53827 1.69480 2.14898 2.33446 2.42036 2.56520 3.04823 3.13049 3.29149 3.55586 3.71048 3.91718 3.96977 4.07824 4.18321 4.30221 4.38571 4.51860 4.61377 4.72222 4.79090 4.81129 4.84436 4.91951 4.94730 5.01162 5.10206 5.22282 5.30093 5.39019 5.43017 5.55589 5.63355 5.97997 6.12453 6.43034 6.67411 6.74392 6.77948 7.20779 7.41045 8.89605 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.003893 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.050219 B = 7190.410801 C = 7761.060606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.263 3.737 3 H 0.010 0.990 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.282 1.282 10 H -0.282 1.282 11 H -0.258 1.258 12 N -0.590 5.590 13 C 0.077 3.923 14 C 0.550 3.450 15 O -0.590 6.590 16 C -0.210 4.210 17 C -0.023 4.023 18 C -0.170 4.170 19 C 0.193 3.807 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.163 4.163 23 N -0.519 5.519 24 C 0.346 3.654 25 O -0.490 6.490 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 -13.687 -17.605 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.028 0.972 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.182 1.182 12 N -0.319 5.319 13 C -0.065 4.065 14 C 0.338 3.662 15 O -0.473 6.473 16 C -0.217 4.217 17 C -0.049 4.049 18 C -0.189 4.189 19 C 0.055 3.945 20 C -0.152 4.152 21 C -0.183 4.183 22 C -0.201 4.201 23 N -0.239 5.239 24 C 0.167 3.833 25 O -0.300 6.300 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.184 0.816 34 H 0.205 0.795 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 7.043 -12.725 -18.118 23.234 hybrid contribution 0.324 0.513 1.923 2.017 sum 7.367 -12.212 -16.195 21.579 Atomic orbital electron populations 1.21904 0.97169 1.00274 0.99935 1.18593 0.91563 0.92280 0.81414 0.97209 1.21549 1.32050 1.13192 0.90828 0.91652 1.25774 0.95002 0.95643 1.02147 1.70025 1.37233 1.24009 1.24511 0.85410 0.77695 0.79325 0.78312 1.20839 1.20707 1.18199 1.48137 1.48139 1.13427 1.22185 1.22065 1.02252 0.80584 1.01636 1.18425 0.78764 0.85492 0.83536 1.90685 1.57387 1.20629 1.78555 1.21023 1.08986 0.98480 0.93193 1.22117 0.90954 0.90877 1.00954 1.22260 1.02576 1.03439 0.90654 1.20872 0.90629 0.87295 0.95746 1.20894 0.96369 1.03711 0.94193 1.23303 0.99870 0.90362 1.04802 1.23079 0.92514 1.01308 1.03165 1.66992 1.13897 1.13321 1.29662 1.19103 0.90735 0.86822 0.86661 1.84590 1.37526 1.13048 1.94822 0.93126 0.91032 0.96545 0.92603 0.91027 0.89731 0.90983 0.81646 0.79542 0.85676 0.86839 0.85782 0.86748 0.89409 0.72162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 8.93 71.98 0.64 -6.03 16 2 C 0.26 13.99 2.63 44.25 0.12 14.11 16 3 H 0.01 0.63 6.91 -2.38 -0.02 0.61 16 4 C -0.54 -29.15 8.37 25.60 0.21 -28.93 16 5 H 0.07 3.37 7.50 -2.91 -0.02 3.35 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -53.24 11.32 21.44 0.24 -53.00 16 8 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 12 N -0.59 -25.92 2.75 -830.58 -2.29 -28.21 16 13 C 0.08 2.47 8.33 127.77 1.06 3.54 16 14 C 0.55 24.45 7.04 86.69 0.61 25.06 16 15 O -0.59 -31.26 15.76 7.09 0.11 -31.14 16 16 C -0.21 -7.19 5.05 -19.91 -0.10 -7.29 16 17 C -0.02 -0.58 7.61 22.72 0.17 -0.40 16 18 C -0.17 -3.16 9.34 22.32 0.21 -2.95 16 19 C 0.19 4.28 6.46 42.58 0.28 4.56 16 20 C -0.13 -2.02 6.21 -11.54 -0.07 -2.09 16 21 C -0.15 -1.21 9.79 30.62 0.30 -0.91 16 22 C -0.16 -1.94 10.24 30.62 0.31 -1.63 16 23 N -0.52 -15.46 10.28 -296.06 -3.04 -18.50 16 24 C 0.35 11.80 7.74 85.13 0.66 12.46 16 25 O -0.49 -17.52 12.53 -76.11 -0.95 -18.47 16 26 H 0.05 2.25 6.70 -2.39 -0.02 2.24 16 27 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 28 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.74 16 30 H 0.07 2.05 7.45 -2.39 -0.02 2.04 16 31 H 0.08 2.24 5.36 -2.39 -0.01 2.23 16 32 H 0.07 2.33 6.45 -2.38 -0.02 2.31 16 33 H 0.17 3.47 6.37 -2.91 -0.02 3.45 16 34 H 0.19 1.81 6.21 -2.91 -0.02 1.79 16 35 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.11 0.69 6.37 -2.39 -0.02 0.67 16 37 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.42 12.05 9.06 -74.06 -0.67 11.38 16 Total: -1.00 -75.37 330.01 1.37 -74.00 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.42 Total: 19.99 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 4.85 Total: 10.69 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -5.09 Total: -99.71 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -0.84 Total: -49.61 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.37 1.37 -74.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931939664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.182 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds