Wall clock time and date at job start Tue Mar 31 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47457 * 2 1 4 4 C 1.50709 * 109.47107 * 240.00376 * 2 1 3 5 5 H 1.07998 * 119.99934 * 239.99927 * 4 2 1 6 6 C 1.37875 * 119.99752 * 60.00008 * 4 2 1 7 7 N 1.31520 * 120.00122 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46896 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47524 * 119.99751 * 8 6 4 11 11 H 1.48504 * 109.46911 * 239.99831 * 8 6 4 12 12 N 1.46498 * 109.47362 * 120.00416 * 2 1 3 13 13 C 1.34776 * 120.00130 * 275.00033 * 12 2 1 14 14 O 1.21592 * 119.99787 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99929 * 179.97438 * 13 12 2 16 16 C 1.40156 * 119.99812 * 184.64309 * 15 13 12 17 17 C 1.38853 * 120.18789 * 144.95321 * 16 15 13 18 18 C 1.37871 * 120.27575 * 179.80922 * 17 16 15 19 19 C 1.39290 * 120.33132 * 359.97438 * 18 17 16 20 20 C 1.38877 * 118.99467 * 0.36988 * 19 18 17 21 21 C 1.37706 * 120.84842 * 359.43506 * 20 19 18 22 22 C 1.51666 * 107.05172 * 179.02329 * 20 19 18 23 23 C 1.54702 * 101.95252 * 344.85270 * 22 20 19 24 24 H 1.09000 * 110.74936 * 266.93516 * 23 22 20 25 25 C 1.52992 * 110.90521 * 143.65462 * 23 22 20 26 26 O 1.36241 * 129.80663 * 180.94457 * 19 18 17 27 27 H 1.08996 * 109.47557 * 59.99848 * 1 2 3 28 28 H 1.09006 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47313 * 299.99240 * 1 2 3 30 30 H 0.97002 * 119.99502 * 180.02562 * 7 6 4 31 31 H 0.97001 * 119.99695 * 95.00023 * 12 2 1 32 32 H 0.96995 * 120.00070 * 4.64432 * 15 13 12 33 33 H 1.08000 * 119.86023 * 359.78233 * 17 16 15 34 34 H 1.07998 * 119.83471 * 179.97438 * 18 17 16 35 35 H 1.08004 * 120.04193 * 180.36567 * 21 20 19 36 36 H 1.08996 * 110.92992 * 103.02012 * 22 20 19 37 37 H 1.08999 * 110.93047 * 226.68440 * 22 20 19 38 38 H 1.08998 * 109.47705 * 305.09576 * 25 23 22 39 39 H 1.08999 * 109.47751 * 65.09609 * 25 23 22 40 40 H 1.08999 * 109.47556 * 185.09915 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 3.1463 -2.2868 -3.6040 10 1 1.1660 -1.5864 -4.8162 11 1 3.1464 -0.1869 -4.8166 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1614 2.4117 15 7 2.5959 -0.6540 3.4576 16 6 2.6378 0.0180 4.6868 17 6 2.3788 -0.6673 5.8664 18 6 2.4234 -0.0089 7.0769 19 6 2.7290 1.3491 7.1282 20 6 2.9795 2.0280 5.9428 21 6 2.9398 1.3731 4.7321 22 6 3.2545 3.4741 6.3081 23 6 2.7328 3.5419 7.7629 24 1 1.6947 3.8732 7.7859 25 6 3.6114 4.4591 8.6157 26 8 2.8420 2.1777 8.2037 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 0.7080 1.1610 -3.4844 31 1 2.2490 -1.6318 1.1524 32 1 2.8899 -1.5765 3.3989 33 1 2.1411 -1.7203 5.8354 34 1 2.2204 -0.5487 7.9899 35 1 3.1426 1.9126 3.8187 36 1 4.3220 3.6900 6.2666 37 1 2.6962 4.1518 5.6621 38 1 4.6485 4.1294 8.5540 39 1 3.5330 5.4822 8.2481 40 1 3.2788 4.4194 9.6530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933149554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:02 Heat of formation + Delta-G solvation = -36.814279 kcal Electronic energy + Delta-G solvation = -22460.264193 eV Core-core repulsion = 19047.397413 eV Total energy + Delta-G solvation = -3412.866780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15016 -39.74302 -37.44253 -34.94798 -33.91933 -33.18319 -32.37506 -31.01774 -29.46088 -28.04526 -26.57102 -25.26856 -22.95856 -21.82601 -21.72825 -20.95832 -19.83852 -18.24274 -17.61726 -17.15187 -16.56135 -15.93129 -15.36844 -14.97217 -14.68549 -14.24206 -14.09401 -13.77470 -13.49739 -13.19094 -13.13478 -12.93808 -12.58419 -12.42033 -12.35373 -12.23251 -11.77272 -11.39507 -11.21473 -11.10868 -10.99070 -10.74171 -10.68171 -10.31275 -10.25639 -9.62006 -9.37970 -9.05531 -8.73677 -8.58485 -8.01961 -7.45691 -6.14766 -4.23927 1.33586 1.49573 3.09338 3.22175 3.27378 3.30937 3.34328 3.62503 3.99270 4.29884 4.39334 4.42668 4.79185 4.93100 4.97938 5.04751 5.12021 5.18113 5.32593 5.34482 5.44902 5.59601 5.74551 5.80767 5.84725 5.99454 6.10229 6.44054 6.48836 6.58443 6.79145 6.95082 6.96986 7.11414 7.23138 7.32929 7.44812 7.60672 7.81869 7.98563 8.13464 8.71399 8.83568 9.22815 9.44795 10.91326 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.003014 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.533241 B = 9287.969747 C = 9723.605485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.719 5.719 13 C 0.693 3.307 14 O -0.584 6.584 15 N -0.695 5.695 16 C 0.154 3.846 17 C -0.121 4.121 18 C -0.119 4.119 19 C 0.077 3.923 20 C -0.155 4.155 21 C -0.071 4.071 22 C -0.105 4.105 23 C 0.077 3.923 24 H 0.084 0.916 25 C -0.148 4.148 26 O -0.307 6.307 27 H 0.091 0.909 28 H 0.026 0.974 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.403 0.597 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 0.555 18.965 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.462 6.462 15 N -0.343 5.343 16 C 0.058 3.942 17 C -0.142 4.142 18 C -0.139 4.139 19 C 0.031 3.969 20 C -0.156 4.156 21 C -0.092 4.092 22 C -0.143 4.143 23 C 0.021 3.979 24 H 0.102 0.898 25 C -0.205 4.205 26 O -0.222 6.222 27 H 0.109 0.891 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.238 0.762 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.164 0.836 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.082 1.717 18.950 19.460 hybrid contribution 0.429 -1.319 -1.094 1.767 sum 4.511 0.398 17.856 18.421 Atomic orbital electron populations 1.22104 0.98534 0.99115 1.00941 1.18684 0.90861 0.93745 0.78867 0.93277 1.21248 1.32438 1.13257 0.90238 0.92012 1.24886 0.94820 0.94975 0.99061 1.69919 1.35829 1.22463 1.23816 0.86377 0.78591 0.79497 0.82518 1.19758 1.20858 1.20866 1.45862 1.68574 1.13320 1.09239 1.16170 0.78592 0.85508 0.80430 1.90863 1.57181 1.14142 1.83988 1.42766 1.68778 1.16273 1.06501 1.17304 1.00320 0.92007 0.84524 1.20563 1.02850 1.00302 0.90506 1.19894 1.04866 0.91081 0.98035 1.19448 0.99296 0.92206 0.85937 1.20602 1.05466 0.96114 0.93432 1.20536 0.97700 0.93522 0.97426 1.21846 1.02772 0.93904 0.95733 1.23339 1.00194 0.81212 0.93193 0.89786 1.21866 0.99950 0.98511 1.00177 1.86819 1.88553 1.16194 1.30593 0.89096 0.95508 0.96581 0.92593 0.78147 0.76232 0.85045 0.85456 0.83582 0.89178 0.88938 0.91514 0.90366 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.15 0.34 -3.35 16 2 C 0.28 7.08 2.56 -69.08 -0.18 6.90 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.72 -14.79 5.07 -59.81 -0.30 -15.09 16 13 C 0.69 13.98 8.38 -86.92 -0.73 13.25 16 14 O -0.58 -13.99 13.45 5.29 0.07 -13.92 16 15 N -0.69 -10.68 5.36 -14.16 -0.08 -10.76 16 16 C 0.15 2.37 6.31 -83.57 -0.53 1.84 16 17 C -0.12 -1.52 9.94 -39.49 -0.39 -1.92 16 18 C -0.12 -1.50 10.06 -39.32 -0.40 -1.90 16 19 C 0.08 1.07 7.03 -38.95 -0.27 0.80 16 20 C -0.15 -2.25 6.27 -104.10 -0.65 -2.90 16 21 C -0.07 -1.18 8.69 -39.53 -0.34 -1.52 16 22 C -0.11 -1.20 6.65 -26.51 -0.18 -1.38 16 23 C 0.08 0.79 4.25 -25.84 -0.11 0.68 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.15 -1.10 9.61 37.15 0.36 -0.74 16 26 O -0.31 -4.02 10.82 -20.51 -0.22 -4.24 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 6.74 8.56 -40.82 -0.35 6.39 16 32 H 0.40 4.70 8.84 -40.82 -0.36 4.34 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.15 2.74 6.24 -52.48 -0.33 2.42 16 36 H 0.09 0.91 7.91 -51.93 -0.41 0.50 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -31.65 334.23 -8.86 -40.51 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.50 Total: 9.95 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.47 Total: -2.85 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.25 Total: -49.91 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.15 Total: -18.16 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.65 -8.86 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933149554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.695 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds