Wall clock time and date at job start Tue Mar 31 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47457 * 2 1 4 4 C 1.50709 * 109.47107 * 240.00376 * 2 1 3 5 5 H 1.07998 * 119.99934 * 239.99927 * 4 2 1 6 6 C 1.37875 * 119.99752 * 60.00008 * 4 2 1 7 7 N 1.31520 * 120.00122 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46896 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47524 * 119.99751 * 8 6 4 11 11 H 1.48504 * 109.46911 * 239.99831 * 8 6 4 12 12 N 1.46498 * 109.47362 * 120.00416 * 2 1 3 13 13 C 1.34776 * 120.00130 * 275.00033 * 12 2 1 14 14 O 1.21592 * 119.99787 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99929 * 179.97438 * 13 12 2 16 16 C 1.40156 * 119.99812 * 184.64309 * 15 13 12 17 17 C 1.38853 * 120.18789 * 144.95321 * 16 15 13 18 18 C 1.37871 * 120.27575 * 179.80922 * 17 16 15 19 19 C 1.39290 * 120.33132 * 359.97438 * 18 17 16 20 20 C 1.38877 * 118.99467 * 0.36988 * 19 18 17 21 21 C 1.37706 * 120.84842 * 359.43506 * 20 19 18 22 22 C 1.51666 * 107.05172 * 179.02329 * 20 19 18 23 23 C 1.54702 * 101.95252 * 344.85270 * 22 20 19 24 24 H 1.09000 * 110.74936 * 266.93516 * 23 22 20 25 25 C 1.52992 * 110.90521 * 143.65462 * 23 22 20 26 26 O 1.36241 * 129.80663 * 180.94457 * 19 18 17 27 27 H 1.08996 * 109.47557 * 59.99848 * 1 2 3 28 28 H 1.09006 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47313 * 299.99240 * 1 2 3 30 30 H 0.97002 * 119.99502 * 180.02562 * 7 6 4 31 31 H 0.97001 * 119.99695 * 95.00023 * 12 2 1 32 32 H 0.96995 * 120.00070 * 4.64432 * 15 13 12 33 33 H 1.08000 * 119.86023 * 359.78233 * 17 16 15 34 34 H 1.07998 * 119.83471 * 179.97438 * 18 17 16 35 35 H 1.08004 * 120.04193 * 180.36567 * 21 20 19 36 36 H 1.08996 * 110.92992 * 103.02012 * 22 20 19 37 37 H 1.08999 * 110.93047 * 226.68440 * 22 20 19 38 38 H 1.08998 * 109.47705 * 305.09576 * 25 23 22 39 39 H 1.08999 * 109.47751 * 65.09609 * 25 23 22 40 40 H 1.08999 * 109.47556 * 185.09915 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 3.1463 -2.2868 -3.6040 10 1 1.1660 -1.5864 -4.8162 11 1 3.1464 -0.1869 -4.8166 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1614 2.4117 15 7 2.5959 -0.6540 3.4576 16 6 2.6378 0.0180 4.6868 17 6 2.3788 -0.6673 5.8664 18 6 2.4234 -0.0089 7.0769 19 6 2.7290 1.3491 7.1282 20 6 2.9795 2.0280 5.9428 21 6 2.9398 1.3731 4.7321 22 6 3.2545 3.4741 6.3081 23 6 2.7328 3.5419 7.7629 24 1 1.6947 3.8732 7.7859 25 6 3.6114 4.4591 8.6157 26 8 2.8420 2.1777 8.2037 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 0.7080 1.1610 -3.4844 31 1 2.2490 -1.6318 1.1524 32 1 2.8899 -1.5765 3.3989 33 1 2.1411 -1.7203 5.8354 34 1 2.2204 -0.5487 7.9899 35 1 3.1426 1.9126 3.8187 36 1 4.3220 3.6900 6.2666 37 1 2.6962 4.1518 5.6621 38 1 4.6485 4.1294 8.5540 39 1 3.5330 5.4822 8.2481 40 1 3.2788 4.4194 9.6530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933149554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:01 Heat of formation + Delta-G solvation = -57.677190 kcal Electronic energy + Delta-G solvation = -22461.168877 eV Core-core repulsion = 19047.397413 eV Total energy + Delta-G solvation = -3413.771464 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19766 -41.20033 -38.69589 -36.75053 -35.35147 -34.28544 -34.07768 -31.94050 -31.11129 -29.45436 -27.49673 -27.32865 -24.29637 -23.06198 -22.61887 -22.37656 -21.55475 -19.84500 -18.72942 -18.37920 -17.80949 -17.56588 -16.88725 -16.35443 -16.17510 -15.77111 -15.26748 -15.20459 -14.60972 -14.47200 -14.33874 -14.14005 -13.84152 -13.78397 -13.36462 -13.36396 -13.07757 -12.97897 -12.87648 -12.72882 -12.29107 -12.23609 -12.14164 -12.10930 -11.71815 -11.11628 -11.08550 -10.76805 -10.61287 -9.85739 -9.78464 -8.63362 -8.17665 -6.34916 0.25515 0.36595 1.45250 1.45909 1.57872 1.75903 2.13340 2.32157 2.42756 2.76750 3.13116 3.34841 3.53194 3.62684 3.93321 4.01708 4.20268 4.23450 4.32631 4.61366 4.66287 4.68819 4.73269 4.77478 4.92646 4.96253 5.00983 5.06996 5.10642 5.23511 5.31393 5.40501 5.42631 5.44875 5.60147 5.66974 5.77803 5.86221 6.09309 6.24626 6.28225 6.73287 7.24696 7.34171 7.68508 8.89063 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.003014 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.533241 B = 9287.969747 C = 9723.605485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.714 5.714 13 C 0.691 3.309 14 O -0.627 6.627 15 N -0.673 5.673 16 C 0.129 3.871 17 C -0.104 4.104 18 C -0.117 4.117 19 C 0.071 3.929 20 C -0.171 4.171 21 C -0.097 4.097 22 C -0.108 4.108 23 C 0.074 3.926 24 H 0.091 0.909 25 C -0.142 4.142 26 O -0.314 6.314 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.009 0.991 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.423 0.577 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 -1.342 20.517 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.366 5.366 13 C 0.392 3.608 14 O -0.508 6.508 15 N -0.323 5.323 16 C 0.034 3.966 17 C -0.124 4.124 18 C -0.136 4.136 19 C 0.025 3.975 20 C -0.173 4.173 21 C -0.118 4.118 22 C -0.145 4.145 23 C 0.019 3.981 24 H 0.109 0.891 25 C -0.199 4.199 26 O -0.229 6.229 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.240 0.760 32 H 0.262 0.738 33 H 0.186 0.814 34 H 0.176 0.824 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.672 -0.237 20.559 21.085 hybrid contribution 0.264 -0.660 -1.448 1.613 sum 4.936 -0.897 19.111 19.759 Atomic orbital electron populations 1.21923 0.98443 0.99480 0.99468 1.18250 0.90861 0.91681 0.80693 0.98295 1.21563 1.32545 1.13590 0.90598 0.90687 1.25806 0.94893 0.95602 1.02337 1.70067 1.36985 1.23972 1.24582 0.85266 0.78058 0.78486 0.78311 1.18300 1.20434 1.21065 1.45434 1.68854 1.13984 1.08347 1.16279 0.78377 0.84987 0.81178 1.90846 1.58884 1.16265 1.84799 1.42372 1.67680 1.16900 1.05302 1.17551 1.02006 0.91957 0.85105 1.20879 1.00749 1.01739 0.89067 1.20325 1.03386 0.90661 0.99189 1.19749 0.98899 0.93030 0.85822 1.20860 1.05443 0.97839 0.93117 1.20407 0.99940 0.94491 0.96944 1.21958 1.03543 0.92328 0.96647 1.23586 1.01295 0.80519 0.92743 0.89106 1.21883 0.99156 0.98749 1.00140 1.86812 1.88413 1.17261 1.30450 0.91394 0.94004 0.97161 0.92532 0.76048 0.73841 0.81421 0.82383 0.87025 0.88173 0.88931 0.91644 0.88389 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 2 C 0.29 14.99 2.56 44.25 0.11 15.11 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.54 -28.54 8.73 25.60 0.22 -28.32 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 8 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 9 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 N -0.71 -29.52 5.07 -461.41 -2.34 -31.87 16 13 C 0.69 28.47 8.38 179.06 1.50 29.97 16 14 O -0.63 -31.66 13.45 -4.00 -0.05 -31.72 16 15 N -0.67 -20.26 5.36 -316.98 -1.70 -21.96 16 16 C 0.13 3.89 6.31 38.12 0.24 4.13 16 17 C -0.10 -2.34 9.94 22.33 0.22 -2.12 16 18 C -0.12 -2.61 10.06 22.44 0.23 -2.39 16 19 C 0.07 1.88 7.03 22.68 0.16 2.04 16 20 C -0.17 -5.03 6.27 -19.53 -0.12 -5.16 16 21 C -0.10 -3.34 8.69 22.31 0.19 -3.14 16 22 C -0.11 -2.46 6.65 30.74 0.20 -2.25 16 23 C 0.07 1.43 4.25 31.17 0.13 1.57 16 24 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 25 C -0.14 -1.83 9.61 71.98 0.69 -1.14 16 26 O -0.31 -7.73 10.82 -96.30 -1.04 -8.77 16 27 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 28 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.40 13.64 8.56 -92.71 -0.79 12.84 16 32 H 0.42 9.03 8.84 -92.71 -0.82 8.21 16 33 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 34 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.11 4.57 6.24 -2.91 -0.02 4.55 16 36 H 0.10 2.02 7.91 -2.39 -0.02 2.00 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -71.13 334.23 1.50 -69.63 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.54 Total: 29.98 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 4.90 Total: 3.28 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.80 Total: -106.06 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.10 Total: -40.49 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -71.13 1.50 -69.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933149554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.952 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds