Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.66810 * 2 1 4 4 C 1.54696 * 110.75253 * 123.22588 * 2 1 3 5 5 C 1.51663 * 101.95180 * 93.24735 * 4 2 1 6 6 C 1.37709 * 132.08601 * 195.92294 * 5 4 2 7 7 C 1.38910 * 119.92161 * 179.26726 * 6 5 4 8 8 N 1.40149 * 120.18582 * 179.78659 * 7 6 5 9 9 C 1.34781 * 120.00027 * 214.76774 * 8 7 6 10 10 O 1.21595 * 119.99535 * 355.64942 * 9 8 7 11 11 N 1.34774 * 120.00173 * 175.63751 * 9 8 7 12 12 C 1.46504 * 119.99740 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46785 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47112 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00116 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00024 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99758 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99969 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47009 * 90.00004 * 18 16 14 20 20 H 1.48499 * 109.47127 * 210.00432 * 18 16 14 21 21 H 1.48508 * 109.46867 * 329.99986 * 18 16 14 22 22 C 1.38850 * 119.62087 * 359.51156 * 7 6 5 23 23 C 1.37877 * 120.27905 * 0.44048 * 22 7 6 24 24 C 1.38875 * 107.05768 * 15.15437 * 5 4 2 25 25 O 1.36251 * 111.19085 * 1.43772 * 24 5 4 26 26 H 1.08997 * 109.47000 * 296.77414 * 1 2 3 27 27 H 1.09005 * 109.47285 * 56.77235 * 1 2 3 28 28 H 1.08999 * 109.47438 * 176.77608 * 1 2 3 29 29 H 1.08997 * 110.92932 * 335.08593 * 4 2 1 30 30 H 1.08992 * 110.96678 * 211.42470 * 4 2 1 31 31 H 1.07998 * 120.04079 * 359.05098 * 6 5 4 32 32 H 0.96992 * 120.00129 * 35.05746 * 8 7 6 33 33 H 0.96993 * 119.99815 * 0.02562 * 11 9 8 34 34 H 1.08996 * 109.47429 * 300.00042 * 12 11 9 35 35 H 1.08999 * 109.46758 * 60.00901 * 12 11 9 36 36 H 1.09001 * 109.47144 * 300.00428 * 13 12 11 37 37 H 1.08998 * 109.47425 * 60.00069 * 13 12 11 38 38 H 0.97000 * 119.99545 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.86294 * 180.41336 * 22 7 6 40 40 H 1.08002 * 119.83383 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0781 -0.7926 1.2101 5 6 2.2680 -2.1764 0.6192 6 6 2.4517 -3.4111 1.2007 7 6 2.5869 -4.5398 0.4023 8 7 2.7786 -5.7985 0.9882 9 6 3.5615 -6.7123 0.3810 10 8 4.0374 -6.4746 -0.7124 11 7 3.8169 -7.8893 0.9858 12 6 4.6684 -8.8823 0.3259 13 6 4.7959 -10.1184 1.2185 14 6 5.6722 -11.1396 0.5401 15 1 6.0962 -10.9279 -0.4304 16 6 5.9337 -12.3437 1.1589 17 7 5.4178 -12.6011 2.3409 18 14 7.0194 -13.6098 0.3177 19 1 8.4345 -13.3856 0.7075 20 1 6.6018 -14.9733 0.7318 21 1 6.8846 -13.4769 -1.1553 22 6 2.5254 -4.4147 -0.9792 23 6 2.3404 -3.1768 -1.5575 24 6 2.2129 -2.0407 -0.7618 25 8 2.0430 -0.7378 -1.1223 26 1 -0.3633 0.4629 0.9175 27 1 -0.3634 0.5631 -0.8597 28 1 -0.3634 -1.0260 -0.0578 29 1 1.3527 -0.8127 2.0233 30 1 3.0284 -0.3800 1.5485 31 1 2.4940 -3.5014 2.2760 32 1 2.3445 -6.0135 1.8284 33 1 3.4370 -8.0789 1.8578 34 1 4.2228 -9.1672 -0.6271 35 1 5.6563 -8.4557 0.1522 36 1 5.2413 -9.8337 2.1718 37 1 3.8079 -10.5448 1.3920 38 1 5.6014 -13.4484 2.7761 39 1 2.6234 -5.2906 -1.6034 40 1 2.2932 -3.0878 -2.6328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933149960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = -42.862452 kcal Electronic energy + Delta-G solvation = -21828.824419 eV Core-core repulsion = 18415.695371 eV Total energy + Delta-G solvation = -3413.129048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39876 -40.08115 -37.61807 -34.96041 -34.22586 -33.32911 -32.84716 -30.94231 -29.98572 -28.64456 -26.89494 -24.81999 -22.76737 -22.40340 -21.78099 -20.95065 -20.42897 -18.32480 -17.46678 -17.23588 -16.36435 -16.34448 -16.06906 -15.20498 -14.74222 -14.53714 -14.34976 -13.96426 -13.78291 -13.68382 -13.34814 -13.11085 -12.86345 -12.79573 -12.53572 -12.34669 -12.29077 -11.51078 -11.39914 -11.22494 -11.05016 -10.87551 -10.65120 -10.37346 -10.02629 -9.75359 -9.59756 -9.29438 -8.94538 -8.60472 -8.39826 -7.66943 -6.11288 -4.14031 1.23626 1.24780 2.81055 3.11122 3.28849 3.33229 3.35077 3.39545 3.74425 4.14266 4.28807 4.37786 4.53550 4.54537 4.74012 4.83230 5.01082 5.15452 5.26026 5.30756 5.31135 5.43816 5.45805 5.62659 5.74191 5.82724 5.88539 6.16280 6.26485 6.33514 6.35754 6.45060 6.71561 6.75793 6.87914 7.10601 7.15383 7.52235 7.59192 7.87447 8.17901 8.30198 8.80058 8.92283 9.50904 11.00342 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.055340 B = 0.002332 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.838744 B =12003.302838 C =12304.349225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.113 0.887 4 C -0.104 4.104 5 C -0.157 4.157 6 C -0.102 4.102 7 C 0.148 3.852 8 N -0.690 5.690 9 C 0.697 3.303 10 O -0.581 6.581 11 N -0.732 5.732 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.085 4.085 23 C -0.118 4.118 24 C 0.082 3.918 25 O -0.302 6.302 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.405 0.595 33 H 0.395 0.605 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.151 0.849 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 24.115 0.344 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 H 0.131 0.869 4 C -0.141 4.141 5 C -0.158 4.158 6 C -0.123 4.123 7 C 0.053 3.947 8 N -0.339 5.339 9 C 0.398 3.602 10 O -0.458 6.458 11 N -0.385 5.385 12 C 0.016 3.984 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.105 4.105 23 C -0.137 4.137 24 C 0.036 3.964 25 O -0.217 6.217 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.144 0.856 32 H 0.240 0.760 33 H 0.228 0.772 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.169 0.831 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.688 24.188 -0.723 26.454 hybrid contribution 0.212 -0.975 0.756 1.252 sum -10.476 23.213 0.032 25.467 Atomic orbital electron populations 1.22244 0.94353 1.03342 1.02888 1.23371 0.94614 0.96343 0.83657 0.86940 1.21827 1.02524 0.91393 0.98321 1.20389 1.06988 0.94635 0.93808 1.19918 1.03436 0.89448 0.99518 1.17264 1.01559 0.83858 0.92011 1.42627 1.51444 1.12724 1.27076 1.16053 0.79259 0.80567 0.84354 1.90893 1.56351 1.78565 1.20021 1.45568 1.54076 1.15856 1.22984 1.21669 0.92133 0.87881 0.96691 1.19333 0.97853 0.90352 0.94954 1.21039 1.30223 1.00257 1.04462 0.92172 1.25001 0.96060 0.98340 0.94933 1.69955 1.44476 1.24236 1.14652 0.86498 0.80615 0.80460 0.79906 1.20550 1.21179 1.19694 1.21139 0.97742 0.97790 0.93872 1.20186 1.04777 0.88899 0.99830 1.19498 0.99284 0.84904 0.92694 1.86904 1.80223 1.16733 1.37808 0.90808 0.91440 0.91732 0.89132 0.89184 0.85587 0.75993 0.77151 0.92496 0.92520 0.95928 0.95898 0.92840 0.83108 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.51 37.16 0.35 -0.73 16 2 C 0.08 0.58 4.31 -25.84 -0.11 0.47 16 3 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.10 -0.79 6.65 -26.52 -0.18 -0.97 16 5 C -0.16 -1.71 6.26 -104.11 -0.65 -2.36 16 6 C -0.10 -1.14 9.96 -39.53 -0.39 -1.53 16 7 C 0.15 1.97 6.31 -83.58 -0.53 1.44 16 8 N -0.69 -8.94 5.36 -14.16 -0.08 -9.02 16 9 C 0.70 11.89 8.41 -86.92 -0.73 11.16 16 10 O -0.58 -11.97 13.80 5.28 0.07 -11.89 16 11 N -0.73 -12.45 5.56 -65.22 -0.36 -12.81 16 12 C 0.14 2.90 5.61 -4.04 -0.02 2.88 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 14 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 18 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 22 C -0.09 -1.21 8.68 -39.49 -0.34 -1.56 16 23 C -0.12 -1.52 10.06 -39.33 -0.40 -1.92 16 24 C 0.08 1.01 6.91 -38.96 -0.27 0.74 16 25 O -0.30 -3.49 10.83 -20.54 -0.22 -3.71 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.09 0.52 7.92 -51.93 -0.41 0.11 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.40 3.83 8.84 -40.82 -0.36 3.47 16 33 H 0.40 5.66 8.49 -40.82 -0.35 5.31 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.15 2.40 6.24 -52.48 -0.33 2.07 16 40 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -32.70 338.87 -9.22 -41.92 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.63 Total: 4.62 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -3.82 Total: -5.30 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.30 Total: -47.00 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.15 Total: -15.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.70 -9.22 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933149960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.939 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds