Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.66810 * 2 1 4 4 C 1.54696 * 110.75253 * 123.22588 * 2 1 3 5 5 C 1.51663 * 101.95180 * 93.24735 * 4 2 1 6 6 C 1.37709 * 132.08601 * 195.92294 * 5 4 2 7 7 C 1.38910 * 119.92161 * 179.26726 * 6 5 4 8 8 N 1.40149 * 120.18582 * 179.78659 * 7 6 5 9 9 C 1.34781 * 120.00027 * 214.76774 * 8 7 6 10 10 O 1.21595 * 119.99535 * 355.64942 * 9 8 7 11 11 N 1.34774 * 120.00173 * 175.63751 * 9 8 7 12 12 C 1.46504 * 119.99740 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46785 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47112 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00116 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00024 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99758 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99969 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47009 * 90.00004 * 18 16 14 20 20 H 1.48499 * 109.47127 * 210.00432 * 18 16 14 21 21 H 1.48508 * 109.46867 * 329.99986 * 18 16 14 22 22 C 1.38850 * 119.62087 * 359.51156 * 7 6 5 23 23 C 1.37877 * 120.27905 * 0.44048 * 22 7 6 24 24 C 1.38875 * 107.05768 * 15.15437 * 5 4 2 25 25 O 1.36251 * 111.19085 * 1.43772 * 24 5 4 26 26 H 1.08997 * 109.47000 * 296.77414 * 1 2 3 27 27 H 1.09005 * 109.47285 * 56.77235 * 1 2 3 28 28 H 1.08999 * 109.47438 * 176.77608 * 1 2 3 29 29 H 1.08997 * 110.92932 * 335.08593 * 4 2 1 30 30 H 1.08992 * 110.96678 * 211.42470 * 4 2 1 31 31 H 1.07998 * 120.04079 * 359.05098 * 6 5 4 32 32 H 0.96992 * 120.00129 * 35.05746 * 8 7 6 33 33 H 0.96993 * 119.99815 * 0.02562 * 11 9 8 34 34 H 1.08996 * 109.47429 * 300.00042 * 12 11 9 35 35 H 1.08999 * 109.46758 * 60.00901 * 12 11 9 36 36 H 1.09001 * 109.47144 * 300.00428 * 13 12 11 37 37 H 1.08998 * 109.47425 * 60.00069 * 13 12 11 38 38 H 0.97000 * 119.99545 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.86294 * 180.41336 * 22 7 6 40 40 H 1.08002 * 119.83383 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0781 -0.7926 1.2101 5 6 2.2680 -2.1764 0.6192 6 6 2.4517 -3.4111 1.2007 7 6 2.5869 -4.5398 0.4023 8 7 2.7786 -5.7985 0.9882 9 6 3.5615 -6.7123 0.3810 10 8 4.0374 -6.4746 -0.7124 11 7 3.8169 -7.8893 0.9858 12 6 4.6684 -8.8823 0.3259 13 6 4.7959 -10.1184 1.2185 14 6 5.6722 -11.1396 0.5401 15 1 6.0962 -10.9279 -0.4304 16 6 5.9337 -12.3437 1.1589 17 7 5.4178 -12.6011 2.3409 18 14 7.0194 -13.6098 0.3177 19 1 8.4345 -13.3856 0.7075 20 1 6.6018 -14.9733 0.7318 21 1 6.8846 -13.4769 -1.1553 22 6 2.5254 -4.4147 -0.9792 23 6 2.3404 -3.1768 -1.5575 24 6 2.2129 -2.0407 -0.7618 25 8 2.0430 -0.7378 -1.1223 26 1 -0.3633 0.4629 0.9175 27 1 -0.3634 0.5631 -0.8597 28 1 -0.3634 -1.0260 -0.0578 29 1 1.3527 -0.8127 2.0233 30 1 3.0284 -0.3800 1.5485 31 1 2.4940 -3.5014 2.2760 32 1 2.3445 -6.0135 1.8284 33 1 3.4370 -8.0789 1.8578 34 1 4.2228 -9.1672 -0.6271 35 1 5.6563 -8.4557 0.1522 36 1 5.2413 -9.8337 2.1718 37 1 3.8079 -10.5448 1.3920 38 1 5.6014 -13.4484 2.7761 39 1 2.6234 -5.2906 -1.6034 40 1 2.2932 -3.0878 -2.6328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933149960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = -64.453290 kcal Electronic energy + Delta-G solvation = -21829.760668 eV Core-core repulsion = 18415.695371 eV Total energy + Delta-G solvation = -3414.065297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.25968 -41.31827 -38.68714 -36.60169 -35.43464 -34.77532 -34.05212 -31.78908 -31.58913 -29.80673 -27.62766 -26.68485 -23.84185 -23.53285 -22.67269 -22.45282 -21.64523 -19.63901 -18.54024 -18.35432 -18.11055 -17.27188 -16.93701 -16.54953 -16.42519 -16.16475 -15.25753 -15.22476 -15.01510 -14.71227 -14.45250 -14.28747 -14.07470 -13.76547 -13.67050 -13.21583 -13.12408 -12.97582 -12.93095 -12.52554 -12.31765 -12.18942 -12.03042 -11.76483 -11.64626 -11.48040 -11.20624 -10.81695 -10.59894 -10.04957 -9.85621 -8.66170 -8.23848 -6.33674 0.26099 0.30704 1.42312 1.42822 1.53203 1.59447 2.01580 2.35083 2.41520 2.74752 3.11234 3.22123 3.47938 3.65047 3.93308 4.01608 4.19655 4.28350 4.35407 4.44780 4.51763 4.54524 4.65670 4.77087 4.84360 4.86885 4.88533 5.03857 5.11860 5.25094 5.26688 5.30324 5.36227 5.44194 5.50759 5.59895 5.77074 5.79152 5.98309 6.17176 6.25079 6.79461 7.00671 7.35449 7.47428 8.87962 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.055340 B = 0.002332 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.838744 B =12003.302838 C =12304.349225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.068 3.932 3 H 0.138 0.862 4 C -0.098 4.098 5 C -0.157 4.157 6 C -0.092 4.092 7 C 0.127 3.873 8 N -0.670 5.670 9 C 0.698 3.302 10 O -0.619 6.619 11 N -0.725 5.725 12 C 0.160 3.840 13 C 0.023 3.977 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.104 4.104 23 C -0.132 4.132 24 C 0.074 3.926 25 O -0.321 6.321 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.157 0.843 32 H 0.424 0.576 33 H 0.410 0.590 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.010 0.990 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.126 0.874 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 25.811 1.618 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 H 0.155 0.845 4 C -0.135 4.135 5 C -0.158 4.158 6 C -0.112 4.112 7 C 0.033 3.967 8 N -0.319 5.319 9 C 0.398 3.602 10 O -0.499 6.499 11 N -0.379 5.379 12 C 0.036 3.964 13 C -0.014 4.014 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.125 4.125 23 C -0.151 4.151 24 C 0.029 3.971 25 O -0.236 6.236 26 H 0.118 0.882 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.175 0.825 32 H 0.262 0.738 33 H 0.246 0.754 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.087 25.922 0.594 28.200 hybrid contribution 0.257 -1.350 0.359 1.420 sum -10.830 24.572 0.954 26.870 Atomic orbital electron populations 1.22250 0.93435 1.02525 1.04317 1.23761 0.95454 0.97053 0.82480 0.84474 1.21959 1.03972 0.88808 0.98777 1.20842 1.05306 0.96155 0.93494 1.20155 1.01768 0.88533 1.00782 1.17440 1.02933 0.84416 0.91943 1.42298 1.50326 1.11978 1.27335 1.16111 0.79401 0.80763 0.83915 1.90878 1.57939 1.79308 1.21807 1.45201 1.53822 1.15433 1.23486 1.21132 0.92224 0.87395 0.95680 1.19134 0.96453 0.91153 0.94672 1.21460 1.30830 1.01378 1.04746 0.92292 1.25858 0.97381 1.00391 0.95571 1.70052 1.45630 1.24963 1.15892 0.85456 0.78837 0.77846 0.78977 1.19806 1.20545 1.19119 1.20986 0.99515 0.97491 0.94500 1.20230 1.05446 0.89122 1.00348 1.19649 0.98885 0.85153 0.93461 1.86889 1.80441 1.16364 1.39912 0.88206 0.91393 0.93455 0.86525 0.87866 0.82528 0.73765 0.75423 0.93502 0.93623 0.97170 0.97110 0.92557 0.85625 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.51 71.98 0.68 -1.01 16 2 C 0.07 0.85 4.31 31.17 0.13 0.98 16 3 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.10 -1.14 6.65 30.73 0.20 -0.94 16 5 C -0.16 -3.07 6.26 -19.53 -0.12 -3.20 16 6 C -0.09 -1.84 9.96 22.31 0.22 -1.61 16 7 C 0.13 3.32 6.31 38.12 0.24 3.56 16 8 N -0.67 -16.83 5.36 -316.98 -1.70 -18.53 16 9 C 0.70 23.92 8.41 179.05 1.51 25.42 16 10 O -0.62 -26.31 13.80 -4.01 -0.06 -26.36 16 11 N -0.73 -24.67 5.56 -478.53 -2.66 -27.33 16 12 C 0.16 6.81 5.61 86.38 0.48 7.30 16 13 C 0.02 1.16 5.09 29.85 0.15 1.32 16 14 C -0.55 -30.29 9.11 25.60 0.23 -30.05 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 16 C 0.01 0.38 5.46 84.66 0.46 0.84 16 17 N -0.93 -53.85 13.29 21.45 0.28 -53.56 16 18 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.10 -3.10 8.68 22.33 0.19 -2.90 16 23 C -0.13 -3.54 10.06 22.44 0.23 -3.31 16 24 C 0.07 1.78 6.91 22.67 0.16 1.94 16 25 O -0.32 -7.01 10.83 -96.42 -1.04 -8.06 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 29 H 0.12 0.79 7.92 -2.39 -0.02 0.77 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.42 7.25 8.84 -92.71 -0.82 6.43 16 33 H 0.41 11.48 8.49 -92.71 -0.79 10.69 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.27 14.53 8.31 -92.71 -0.77 13.75 16 39 H 0.13 4.32 6.24 -2.91 -0.02 4.30 16 40 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -71.59 338.87 1.09 -70.49 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.54 Total: 19.48 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.78 Total: -1.67 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -4.07 Total: -99.42 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.10 Total: -34.42 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.59 1.09 -70.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933149960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.040 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds