Wall clock time and date at job start Tue Mar 31 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.66542 * 2 1 4 4 C 1.54700 * 110.90489 * 123.32590 * 2 1 3 5 5 C 1.51660 * 101.95404 * 143.65964 * 4 2 1 6 6 C 1.37709 * 132.10228 * 164.37958 * 5 4 2 7 7 C 1.38913 * 119.92289 * 180.91198 * 6 5 4 8 8 N 1.40156 * 120.18310 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00117 * 324.92602 * 8 7 6 10 10 O 1.21592 * 120.00143 * 4.61037 * 9 8 7 11 11 N 1.34779 * 119.99988 * 184.61576 * 9 8 7 12 12 C 1.46503 * 119.99944 * 359.97438 * 11 9 8 13 13 C 1.46502 * 119.99827 * 180.02562 * 11 9 8 14 14 C 1.50697 * 109.47206 * 89.99542 * 13 11 9 15 15 H 1.08001 * 120.00398 * 359.97438 * 14 13 11 16 16 C 1.37882 * 120.00155 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99624 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47032 * 89.99873 * 18 16 14 20 20 H 1.48500 * 109.46900 * 210.00151 * 18 16 14 21 21 H 1.48496 * 109.47046 * 330.00151 * 18 16 14 22 22 C 1.38847 * 119.62779 * 359.97438 * 7 6 5 23 23 C 1.37883 * 120.27458 * 359.80777 * 22 7 6 24 24 C 1.38881 * 107.05188 * 344.85397 * 5 4 2 25 25 O 1.36243 * 111.19283 * 358.55266 * 24 5 4 26 26 H 1.09002 * 109.46979 * 181.76380 * 1 2 3 27 27 H 1.08994 * 109.47479 * 301.77030 * 1 2 3 28 28 H 1.09004 * 109.46657 * 61.77338 * 1 2 3 29 29 H 1.08999 * 110.93557 * 25.49606 * 4 2 1 30 30 H 1.08999 * 110.93886 * 261.81847 * 4 2 1 31 31 H 1.07996 * 120.03711 * 0.89716 * 6 5 4 32 32 H 0.97001 * 119.99989 * 144.92782 * 8 7 6 33 33 H 1.08996 * 109.46800 * 90.00230 * 12 11 9 34 34 H 1.08997 * 109.46821 * 210.00175 * 12 11 9 35 35 H 1.08999 * 109.47138 * 330.00418 * 12 11 9 36 36 H 1.08999 * 109.46875 * 209.99511 * 13 11 9 37 37 H 1.09000 * 109.46886 * 329.99468 * 13 11 9 38 38 H 0.96993 * 119.99619 * 180.02562 * 17 16 14 39 39 H 1.07995 * 119.86369 * 179.78690 * 22 7 6 40 40 H 1.07998 * 119.83533 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0820 -0.7940 1.2075 5 6 3.3106 -1.4555 0.6134 6 6 4.4009 -2.0665 1.1915 7 6 5.4118 -2.5823 0.3904 8 7 6.5237 -3.2057 0.9730 9 6 7.0137 -2.7526 2.1440 10 8 6.4421 -1.8579 2.7367 11 7 8.1373 -3.2910 2.6578 12 6 8.8258 -4.3692 1.9438 13 6 8.6696 -2.7988 3.9309 14 6 8.0723 -3.5913 5.0650 15 1 7.3665 -4.3822 4.8583 16 6 8.4269 -3.3066 6.3667 17 7 9.2861 -2.3432 6.6185 18 14 7.6872 -4.2894 7.7725 19 1 8.5452 -5.4672 8.0584 20 1 7.6014 -3.4338 8.9832 21 1 6.3268 -4.7485 7.3934 22 6 5.3140 -2.4777 -0.9906 23 6 4.2185 -1.8692 -1.5658 24 6 3.2008 -1.3530 -0.7673 25 8 2.0395 -0.7365 -1.1246 26 1 -0.3633 -1.0272 0.0316 27 1 -0.3634 0.5410 0.8736 28 1 -0.3633 0.4861 -0.9055 29 1 1.3626 -1.5402 1.5447 30 1 2.3563 -0.1235 2.0220 31 1 4.4701 -2.1443 2.2664 32 1 6.9406 -3.9632 0.5335 33 1 9.5605 -3.9419 1.2615 34 1 9.3297 -5.0164 2.6616 35 1 8.0992 -4.9516 1.3771 36 1 9.7536 -2.9124 3.9396 37 1 8.4135 -1.7459 4.0489 38 1 9.5358 -2.1433 7.5341 39 1 6.0994 -2.8743 -1.6169 40 1 4.1495 -1.7921 -2.6409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933152256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:51 Heat of formation + Delta-G solvation = -23.636102 kcal Electronic energy + Delta-G solvation = -22687.253915 eV Core-core repulsion = 19274.958584 eV Total energy + Delta-G solvation = -3412.295331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12129 -39.81136 -37.43180 -34.90433 -34.01889 -33.14193 -32.51472 -30.98000 -28.98855 -27.65146 -26.61161 -25.72363 -23.34913 -22.21408 -21.69807 -21.37236 -19.46083 -17.83597 -17.46971 -16.74110 -16.59518 -16.40369 -15.34644 -15.02917 -14.67914 -14.19762 -14.00883 -13.74799 -13.49930 -13.16833 -13.08315 -12.91354 -12.77213 -12.51124 -12.32919 -12.20397 -12.08937 -11.88639 -11.35936 -11.22295 -11.11039 -10.92428 -10.65236 -10.58502 -10.16312 -9.69461 -9.55246 -9.25002 -8.69044 -8.44744 -7.79657 -7.39635 -6.05384 -4.10252 1.36945 1.53144 3.11316 3.29131 3.30765 3.36017 3.41113 3.65412 4.02545 4.33904 4.44019 4.45814 4.59126 4.83065 4.99864 5.04871 5.13883 5.28582 5.35546 5.37306 5.47051 5.49383 5.62982 5.78942 5.82778 5.85040 5.88192 6.02494 6.07296 6.15148 6.45323 6.51745 6.63880 6.82689 6.99540 7.33946 7.36730 7.48765 7.65983 7.92571 8.21628 8.56852 8.90654 9.22784 9.55227 11.02477 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019902 B = 0.003747 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.539570 B = 7471.673520 C = 8505.921618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 H 0.084 0.916 4 C -0.106 4.106 5 C -0.154 4.154 6 C -0.071 4.071 7 C 0.154 3.846 8 N -0.695 5.695 9 C 0.697 3.303 10 O -0.570 6.570 11 N -0.612 5.612 12 C 0.084 3.916 13 C 0.260 3.740 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.122 4.122 23 C -0.120 4.120 24 C 0.076 3.924 25 O -0.307 6.307 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.402 0.598 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.131 0.869 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.972 -0.078 -15.990 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 H 0.102 0.898 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.091 4.091 7 C 0.058 3.942 8 N -0.345 5.345 9 C 0.399 3.601 10 O -0.446 6.446 11 N -0.348 5.348 12 C -0.060 4.060 13 C 0.140 3.860 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.143 4.143 23 C -0.139 4.139 24 C 0.031 3.969 25 O -0.222 6.222 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.165 0.835 32 H 0.239 0.761 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.298 0.670 -15.511 19.201 hybrid contribution 0.023 -0.957 0.788 1.240 sum -11.274 -0.287 -14.723 18.546 Atomic orbital electron populations 1.21867 0.92330 1.03325 1.02970 1.23337 0.95451 0.95492 0.83646 0.89793 1.21849 0.94713 0.99357 0.98380 1.20601 0.97171 1.04136 0.93599 1.20579 0.89771 0.96964 1.01831 1.17319 0.87462 0.98336 0.91078 1.42904 1.31648 1.35532 1.24435 1.15932 0.81579 0.82422 0.80143 1.90879 1.60146 1.32923 1.60665 1.47502 1.24880 1.37315 1.25072 1.21593 0.96624 0.90703 0.97120 1.19252 0.93656 0.96332 0.76730 1.21459 1.26047 1.18078 0.91055 0.92476 1.24931 0.95132 0.95301 0.98727 1.69930 1.33108 1.29971 1.20356 0.86493 0.79581 0.79723 0.81596 1.20649 1.21068 1.19932 1.20541 0.98589 1.02223 0.92941 1.19878 0.91914 1.02860 0.99241 1.19448 0.87613 0.97068 0.92797 1.86813 1.34507 1.63186 1.37678 0.91519 0.90367 0.91460 0.89173 0.88898 0.83456 0.76135 0.93609 0.90275 0.93154 0.94755 0.93654 0.92691 0.85120 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.61 37.16 0.36 -0.81 16 2 C 0.08 0.83 4.25 -25.84 -0.11 0.72 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.28 6.65 -26.52 -0.18 -1.45 16 5 C -0.15 -2.33 6.27 -104.10 -0.65 -2.98 16 6 C -0.07 -1.23 8.69 -39.52 -0.34 -1.58 16 7 C 0.15 2.46 6.31 -83.58 -0.53 1.94 16 8 N -0.69 -11.33 5.23 -14.16 -0.07 -11.40 16 9 C 0.70 14.88 8.13 -86.92 -0.71 14.17 16 10 O -0.57 -14.49 13.37 5.28 0.07 -14.42 16 11 N -0.61 -12.96 2.86 -188.74 -0.54 -13.50 16 12 C 0.08 1.28 10.24 59.85 0.61 1.89 16 13 C 0.26 6.76 5.16 -5.19 -0.03 6.73 16 14 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.12 -1.57 9.94 -39.49 -0.39 -1.97 16 23 C -0.12 -1.54 10.06 -39.32 -0.40 -1.93 16 24 C 0.08 1.09 7.03 -38.96 -0.27 0.82 16 25 O -0.31 -4.14 10.82 -20.52 -0.22 -4.36 16 26 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.15 2.96 6.24 -52.49 -0.33 2.63 16 32 H 0.40 5.10 6.52 -40.82 -0.27 4.83 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 35 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 36 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -33.95 335.19 -8.53 -42.48 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.48 Total: 3.13 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -3.06 Total: 1.99 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.12 Total: -50.62 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.15 Total: -18.78 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.95 -8.53 -42.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933152256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.843 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds