Wall clock time and date at job start Tue Mar 31 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.66542 * 2 1 4 4 C 1.54700 * 110.90489 * 123.32590 * 2 1 3 5 5 C 1.51660 * 101.95404 * 143.65964 * 4 2 1 6 6 C 1.37709 * 132.10228 * 164.37958 * 5 4 2 7 7 C 1.38913 * 119.92289 * 180.91198 * 6 5 4 8 8 N 1.40156 * 120.18310 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00117 * 324.92602 * 8 7 6 10 10 O 1.21592 * 120.00143 * 4.61037 * 9 8 7 11 11 N 1.34779 * 119.99988 * 184.61576 * 9 8 7 12 12 C 1.46503 * 119.99944 * 359.97438 * 11 9 8 13 13 C 1.46502 * 119.99827 * 180.02562 * 11 9 8 14 14 C 1.50697 * 109.47206 * 89.99542 * 13 11 9 15 15 H 1.08001 * 120.00398 * 359.97438 * 14 13 11 16 16 C 1.37882 * 120.00155 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99624 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47032 * 89.99873 * 18 16 14 20 20 H 1.48500 * 109.46900 * 210.00151 * 18 16 14 21 21 H 1.48496 * 109.47046 * 330.00151 * 18 16 14 22 22 C 1.38847 * 119.62779 * 359.97438 * 7 6 5 23 23 C 1.37883 * 120.27458 * 359.80777 * 22 7 6 24 24 C 1.38881 * 107.05188 * 344.85397 * 5 4 2 25 25 O 1.36243 * 111.19283 * 358.55266 * 24 5 4 26 26 H 1.09002 * 109.46979 * 181.76380 * 1 2 3 27 27 H 1.08994 * 109.47479 * 301.77030 * 1 2 3 28 28 H 1.09004 * 109.46657 * 61.77338 * 1 2 3 29 29 H 1.08999 * 110.93557 * 25.49606 * 4 2 1 30 30 H 1.08999 * 110.93886 * 261.81847 * 4 2 1 31 31 H 1.07996 * 120.03711 * 0.89716 * 6 5 4 32 32 H 0.97001 * 119.99989 * 144.92782 * 8 7 6 33 33 H 1.08996 * 109.46800 * 90.00230 * 12 11 9 34 34 H 1.08997 * 109.46821 * 210.00175 * 12 11 9 35 35 H 1.08999 * 109.47138 * 330.00418 * 12 11 9 36 36 H 1.08999 * 109.46875 * 209.99511 * 13 11 9 37 37 H 1.09000 * 109.46886 * 329.99468 * 13 11 9 38 38 H 0.96993 * 119.99619 * 180.02562 * 17 16 14 39 39 H 1.07995 * 119.86369 * 179.78690 * 22 7 6 40 40 H 1.07998 * 119.83533 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0820 -0.7940 1.2075 5 6 3.3106 -1.4555 0.6134 6 6 4.4009 -2.0665 1.1915 7 6 5.4118 -2.5823 0.3904 8 7 6.5237 -3.2057 0.9730 9 6 7.0137 -2.7526 2.1440 10 8 6.4421 -1.8579 2.7367 11 7 8.1373 -3.2910 2.6578 12 6 8.8258 -4.3692 1.9438 13 6 8.6696 -2.7988 3.9309 14 6 8.0723 -3.5913 5.0650 15 1 7.3665 -4.3822 4.8583 16 6 8.4269 -3.3066 6.3667 17 7 9.2861 -2.3432 6.6185 18 14 7.6872 -4.2894 7.7725 19 1 8.5452 -5.4672 8.0584 20 1 7.6014 -3.4338 8.9832 21 1 6.3268 -4.7485 7.3934 22 6 5.3140 -2.4777 -0.9906 23 6 4.2185 -1.8692 -1.5658 24 6 3.2008 -1.3530 -0.7673 25 8 2.0395 -0.7365 -1.1246 26 1 -0.3633 -1.0272 0.0316 27 1 -0.3634 0.5410 0.8736 28 1 -0.3633 0.4861 -0.9055 29 1 1.3626 -1.5402 1.5447 30 1 2.3563 -0.1235 2.0220 31 1 4.4701 -2.1443 2.2664 32 1 6.9406 -3.9632 0.5335 33 1 9.5605 -3.9419 1.2615 34 1 9.3297 -5.0164 2.6616 35 1 8.0992 -4.9516 1.3771 36 1 9.7536 -2.9124 3.9396 37 1 8.4135 -1.7459 4.0489 38 1 9.5358 -2.1433 7.5341 39 1 6.0994 -2.8743 -1.6169 40 1 4.1495 -1.7921 -2.6409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933152256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:51 Heat of formation + Delta-G solvation = -45.627872 kcal Electronic energy + Delta-G solvation = -22688.207550 eV Core-core repulsion = 19274.958584 eV Total energy + Delta-G solvation = -3413.248966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21432 -41.28486 -38.68229 -36.63345 -35.50039 -34.53582 -34.09373 -31.93058 -30.42891 -29.32421 -27.62771 -27.22780 -25.15767 -23.48538 -22.64074 -22.56163 -20.99315 -19.24697 -18.68830 -18.55515 -18.05111 -17.59387 -16.84591 -16.49006 -16.31074 -15.65726 -15.26740 -15.00140 -14.79533 -14.48274 -14.25451 -14.12954 -13.90510 -13.80939 -13.52135 -13.39809 -13.33464 -13.10987 -13.04083 -12.81936 -12.52780 -12.25346 -12.21022 -12.13351 -11.74377 -11.71001 -11.02291 -10.75855 -10.63791 -9.84549 -9.49837 -8.63958 -8.21530 -6.37027 0.25175 0.36307 1.36132 1.39137 1.49155 1.71204 2.13015 2.30180 2.39466 2.76653 3.03947 3.08344 3.47540 3.58092 3.93048 4.00877 4.19052 4.22716 4.30181 4.32670 4.58902 4.65451 4.67239 4.69075 4.73590 4.83157 4.95353 4.96874 5.01705 5.08641 5.20481 5.22977 5.36323 5.42411 5.43759 5.55067 5.78617 5.78832 6.05725 6.08953 6.25113 6.71717 7.06031 7.30161 7.63184 8.84489 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019902 B = 0.003747 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.539570 B = 7471.673520 C = 8505.921618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.092 0.908 4 C -0.109 4.109 5 C -0.171 4.171 6 C -0.099 4.099 7 C 0.128 3.872 8 N -0.672 5.672 9 C 0.691 3.309 10 O -0.622 6.622 11 N -0.620 5.620 12 C 0.078 3.922 13 C 0.276 3.724 14 C -0.544 4.544 15 H 0.051 0.949 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.276 1.276 22 C -0.102 4.102 23 C -0.115 4.115 24 C 0.071 3.929 25 O -0.313 6.313 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.421 0.579 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.030 0.970 37 H -0.001 1.001 38 H 0.268 0.732 39 H 0.171 0.829 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 -1.293 -18.106 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.109 0.891 4 C -0.146 4.146 5 C -0.173 4.173 6 C -0.120 4.120 7 C 0.033 3.967 8 N -0.324 5.324 9 C 0.393 3.607 10 O -0.502 6.502 11 N -0.355 5.355 12 C -0.064 4.064 13 C 0.154 3.846 14 C -0.582 4.582 15 H 0.069 0.931 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.201 1.201 22 C -0.123 4.123 23 C -0.134 4.134 24 C 0.026 3.974 25 O -0.228 6.228 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.262 0.738 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.188 0.812 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.153 -0.595 -17.698 21.477 hybrid contribution 0.246 -0.528 1.356 1.476 sum -11.907 -1.123 -16.342 20.251 Atomic orbital electron populations 1.21884 0.89897 1.03730 1.04395 1.23576 0.97279 0.95186 0.82003 0.89061 1.21963 0.93955 0.99639 0.99052 1.20844 0.97486 1.04139 0.94791 1.20413 0.91908 0.99452 1.00181 1.17581 0.87034 0.99682 0.92417 1.42501 1.31432 1.35748 1.22719 1.16135 0.81353 0.81997 0.81186 1.90848 1.61602 1.35304 1.62480 1.47364 1.25302 1.38715 1.24104 1.21910 0.97866 0.89443 0.97226 1.18697 0.93231 0.93702 0.78931 1.21716 1.26087 1.18187 0.92237 0.93052 1.25834 0.95439 0.96306 1.01457 1.70044 1.34198 1.31302 1.21170 0.85420 0.78698 0.78670 0.78029 1.18677 1.20586 1.20063 1.20879 0.99297 1.00608 0.91484 1.20334 0.90942 1.01265 1.00823 1.19750 0.88240 0.96929 0.92517 1.86807 1.34067 1.63258 1.38693 0.91659 0.88455 0.90467 0.88275 0.89116 0.87467 0.73839 0.90810 0.90797 0.89510 0.95170 0.98320 0.92359 0.81198 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.61 71.98 0.69 -1.25 16 2 C 0.08 1.52 4.25 31.17 0.13 1.65 16 3 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 4 C -0.11 -2.66 6.65 30.73 0.20 -2.45 16 5 C -0.17 -5.28 6.27 -19.53 -0.12 -5.40 16 6 C -0.10 -3.59 8.69 22.31 0.19 -3.40 16 7 C 0.13 4.03 6.31 38.12 0.24 4.28 16 8 N -0.67 -21.48 5.23 -316.98 -1.66 -23.14 16 9 C 0.69 30.37 8.13 179.05 1.46 31.82 16 10 O -0.62 -33.73 13.37 -4.01 -0.05 -33.78 16 11 N -0.62 -26.70 2.86 -869.31 -2.48 -29.18 16 12 C 0.08 2.24 10.24 127.77 1.31 3.55 16 13 C 0.28 15.02 5.16 85.63 0.44 15.46 16 14 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16 15 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 16 C 0.01 0.50 5.46 84.66 0.46 0.97 16 17 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 18 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 C -0.10 -2.35 9.94 22.33 0.22 -2.13 16 23 C -0.11 -2.61 10.06 22.44 0.23 -2.38 16 24 C 0.07 1.95 7.03 22.68 0.16 2.11 16 25 O -0.31 -7.90 10.82 -96.33 -1.04 -8.94 16 26 H 0.06 0.92 8.12 -2.39 -0.02 0.91 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.10 2.17 7.91 -2.39 -0.02 2.15 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.11 4.74 6.24 -2.91 -0.02 4.72 16 32 H 0.42 9.66 6.52 -92.71 -0.60 9.05 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 35 H 0.09 1.84 6.30 -2.39 -0.02 1.83 16 36 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 37 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -78.36 335.19 3.38 -74.97 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.45 Total: 17.34 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 5.86 Total: 11.47 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -3.86 Total: -108.26 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.10 Total: -42.72 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -78.36 3.38 -74.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933152256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.346 kcal (2) G-P(sol) polarization free energy of solvation -78.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds