Wall clock time and date at job start Tue Mar 31 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.87131 * 2 1 4 4 C 1.54325 * 109.88162 * 238.98792 * 2 1 3 5 5 H 1.08997 * 110.72545 * 100.02818 * 4 2 1 6 6 N 1.46498 * 110.72117 * 336.74805 * 4 2 1 7 7 C 1.36932 * 120.00092 * 155.78675 * 6 4 2 8 8 H 1.07997 * 120.00064 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00359 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99944 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00278 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47025 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47069 * 120.00595 * 11 9 7 14 14 H 1.48504 * 109.47229 * 239.99996 * 11 9 7 15 15 C 1.55157 * 102.93697 * 218.38753 * 4 2 1 16 16 C 1.54914 * 101.58310 * 35.50254 * 15 4 2 17 17 N 1.47020 * 109.88389 * 121.17673 * 2 1 3 18 18 C 1.34782 * 125.64501 * 298.39735 * 17 2 1 19 19 O 1.21782 * 119.99842 * 359.97438 * 18 17 2 20 20 C 1.41544 * 119.99937 * 179.97438 * 18 17 2 21 21 C 1.35623 * 120.00502 * 173.99204 * 20 18 17 22 22 C 1.41613 * 119.99688 * 349.61324 * 21 20 18 23 23 C 1.37947 * 126.10124 * 139.97442 * 22 21 20 24 24 C 1.40321 * 106.52601 * 179.85274 * 23 22 21 25 25 C 1.35161 * 107.20412 * 0.40631 * 24 23 22 26 26 O 1.34017 * 109.03484 * 359.74568 * 25 24 23 27 27 H 1.09005 * 109.47145 * 188.70350 * 1 2 3 28 28 H 1.08999 * 109.47439 * 308.70613 * 1 2 3 29 29 H 1.09001 * 109.47104 * 68.70626 * 1 2 3 30 30 H 0.97005 * 120.00059 * 335.79430 * 6 4 2 31 31 H 0.96999 * 120.00504 * 179.97438 * 10 9 7 32 32 H 1.08997 * 111.00785 * 277.42375 * 15 4 2 33 33 H 1.09005 * 111.03329 * 153.58954 * 15 4 2 34 34 H 1.09001 * 110.36481 * 81.82890 * 16 15 4 35 35 H 1.09002 * 110.36593 * 204.14840 * 16 15 4 36 36 H 1.08010 * 119.99928 * 353.99292 * 20 18 17 37 37 H 1.07998 * 120.00310 * 169.61437 * 21 20 18 38 38 H 1.07992 * 126.73997 * 359.97438 * 23 22 21 39 39 H 1.07996 * 126.40009 * 180.13041 * 24 23 22 40 40 H 1.07993 * 125.48192 * 179.72500 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 2.3530 -0.0431 -2.0202 6 7 1.0472 -1.6830 -1.7498 7 6 1.0704 -2.0699 -3.0632 8 1 1.8317 -1.6858 -3.7259 9 6 0.1160 -2.9565 -3.5425 10 7 -0.8116 -3.4251 -2.7348 11 14 0.1481 -3.4848 -5.3340 12 1 1.2823 -2.8212 -6.0255 13 1 0.3147 -4.9583 -5.4126 14 1 -1.1271 -3.0953 -5.9878 15 6 3.2876 -1.5132 -0.6945 16 6 2.8145 -1.8804 0.7342 17 7 2.0301 -0.7157 1.1829 18 6 1.8074 -0.3655 2.4652 19 8 1.1408 0.6214 2.7199 20 6 2.3483 -1.1446 3.5158 21 6 2.2286 -0.7273 4.8007 22 6 1.7638 0.5810 5.0798 23 6 0.8976 0.9370 6.0926 24 6 0.7193 2.3255 5.9956 25 6 1.4583 2.7512 4.9471 26 8 2.0847 1.7010 4.3988 27 1 -0.3634 -1.0159 0.1555 28 1 -0.3634 0.6426 0.8019 29 1 -0.3633 0.3732 -0.9575 30 1 0.3635 -2.0283 -1.1545 31 1 -1.4787 -4.0444 -3.0698 32 1 4.1654 -0.8678 -0.6616 33 1 3.4859 -2.4092 -1.2828 34 1 2.1887 -2.7725 0.7089 35 1 3.6716 -2.0357 1.3894 36 1 2.8564 -2.0717 3.2943 37 1 2.4878 -1.3926 5.6110 38 1 0.4470 0.2771 6.8190 39 1 0.1028 2.9387 6.6361 40 1 1.5318 3.7731 4.6058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985892415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:49 Heat of formation + Delta-G solvation = 31.175119 kcal Electronic energy + Delta-G solvation = -23304.838398 eV Core-core repulsion = 19894.919860 eV Total energy + Delta-G solvation = -3409.918538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31372 -39.97294 -37.62049 -34.02400 -33.95011 -32.75754 -31.61718 -30.73262 -29.29035 -28.21657 -25.18278 -24.40137 -23.44647 -22.05648 -21.56932 -20.56435 -19.25522 -18.47854 -17.64746 -17.22293 -16.56271 -15.91670 -15.66636 -15.00655 -14.62032 -14.15883 -13.89041 -13.75164 -13.50396 -13.19625 -12.81926 -12.73956 -12.58515 -12.43114 -12.24080 -12.12048 -11.69118 -11.27644 -10.98550 -10.90372 -10.76110 -10.61915 -10.21366 -10.06717 -10.00052 -9.76441 -9.63263 -9.48108 -8.96687 -8.24083 -7.88073 -7.02730 -5.82146 -3.11666 0.61300 2.19248 2.74187 3.24632 3.39913 3.44179 3.46300 3.48218 3.64012 4.54338 4.73343 4.83127 5.05383 5.07886 5.11830 5.26426 5.35122 5.47851 5.60354 5.62360 5.73580 5.77071 5.79893 5.88779 5.99603 6.00846 6.04461 6.18797 6.29397 6.39387 6.44497 6.55438 6.58191 6.65419 6.77576 6.94077 7.03715 7.27430 7.66417 7.93297 8.35927 8.52300 9.47806 10.03504 10.38793 11.40109 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034592 B = 0.003512 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.249617 B = 7971.315940 C = 8130.953456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.128 3.872 3 H 0.069 0.931 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.714 5.714 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.159 4.159 16 C 0.104 3.896 17 N -0.603 5.603 18 C 0.549 3.451 19 O -0.532 6.532 20 C -0.189 4.189 21 C -0.011 4.011 22 C 0.017 3.983 23 C -0.188 4.188 24 C -0.227 4.227 25 C -0.020 4.020 26 O -0.133 6.133 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.388 0.612 31 H 0.255 0.745 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 6.944 16.114 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.024 3.976 3 H 0.087 0.913 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.018 4.018 17 N -0.336 5.336 18 C 0.341 3.659 19 O -0.412 6.412 20 C -0.210 4.210 21 C -0.031 4.031 22 C -0.033 4.033 23 C -0.207 4.207 24 C -0.246 4.246 25 C -0.090 4.090 26 O -0.026 6.026 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.224 0.776 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 7.922 7.443 15.840 19.211 hybrid contribution -0.446 -0.660 -0.701 1.061 sum 7.475 6.783 15.139 18.196 Atomic orbital electron populations 1.21879 0.94270 1.02293 1.01838 1.21951 0.95364 0.95517 0.84787 0.91297 1.21209 0.89121 0.91617 0.92128 0.91335 1.42527 1.32167 1.51523 1.09322 1.19288 1.10455 1.21167 0.86486 0.90987 1.24746 0.97877 1.00125 0.97924 1.69674 1.18026 1.35809 1.34283 0.86127 0.77250 0.78048 0.84782 1.20527 1.21911 1.21881 1.23512 0.99263 1.02334 0.94959 1.22312 0.94411 0.88912 0.96205 1.48590 1.51630 1.28360 1.05028 1.16712 0.81927 0.85203 0.82059 1.90835 1.40354 1.27197 1.82814 1.22404 1.02796 1.02435 0.93347 1.20583 0.94702 0.90890 0.96905 1.19566 1.02906 0.87337 0.93494 1.22100 1.02239 0.95707 1.00672 1.21590 1.05636 0.95389 1.01965 1.24091 0.97316 0.92078 0.95551 1.84264 1.56208 1.14740 1.47404 0.92132 0.92972 0.91288 0.77577 0.93488 0.92102 0.89454 0.91067 0.91774 0.84619 0.82919 0.83604 0.83816 0.78734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.11 37.16 0.30 -2.55 16 2 C 0.13 2.32 3.43 -66.95 -0.23 2.09 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.17 3.28 3.48 -66.10 -0.23 3.05 16 5 H 0.07 1.31 8.10 -51.93 -0.42 0.88 16 6 N -0.71 -16.94 4.55 -51.66 -0.23 -17.18 16 7 C -0.24 -6.42 9.96 -15.06 -0.15 -6.57 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 11 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C -0.16 -2.58 6.77 -24.58 -0.17 -2.75 16 16 C 0.10 1.57 6.43 -2.53 -0.02 1.56 16 17 N -0.60 -10.11 3.06 -166.41 -0.51 -10.62 16 18 C 0.55 9.27 7.19 -15.00 -0.11 9.16 16 19 O -0.53 -10.36 11.69 -19.59 -0.23 -10.58 16 20 C -0.19 -2.45 9.31 -39.26 -0.37 -2.82 16 21 C -0.01 -0.12 9.94 -39.23 -0.39 -0.51 16 22 C 0.02 0.24 5.29 -38.40 -0.20 0.04 16 23 C -0.19 -2.33 10.90 -38.91 -0.42 -2.75 16 24 C -0.23 -2.69 10.87 -39.89 -0.43 -3.12 16 25 C -0.02 -0.25 12.06 29.64 0.36 0.11 16 26 O -0.13 -2.05 7.90 -20.03 -0.16 -2.21 16 27 H 0.06 1.30 6.69 -51.93 -0.35 0.96 16 28 H 0.05 1.03 7.16 -51.93 -0.37 0.66 16 29 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 30 H 0.39 9.97 5.84 -40.82 -0.24 9.73 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.77 7.21 -51.93 -0.37 0.40 16 36 H 0.14 1.38 6.83 -52.48 -0.36 1.03 16 37 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -32.31 331.24 -8.05 -40.37 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.46 Total: 10.54 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.15 Total: -5.46 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.02 Total: -54.44 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.39 Total: -12.79 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.31 -8.05 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.542 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds