Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.87131 * 2 1 4 4 C 1.54325 * 109.88162 * 238.98792 * 2 1 3 5 5 H 1.08997 * 110.72545 * 100.02818 * 4 2 1 6 6 N 1.46498 * 110.72117 * 336.74805 * 4 2 1 7 7 C 1.36932 * 120.00092 * 155.78675 * 6 4 2 8 8 H 1.07997 * 120.00064 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00359 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99944 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00278 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47025 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47069 * 120.00595 * 11 9 7 14 14 H 1.48504 * 109.47229 * 239.99996 * 11 9 7 15 15 C 1.55157 * 102.93697 * 218.38753 * 4 2 1 16 16 C 1.54914 * 101.58310 * 35.50254 * 15 4 2 17 17 N 1.47020 * 109.88389 * 121.17673 * 2 1 3 18 18 C 1.34782 * 125.64501 * 298.39735 * 17 2 1 19 19 O 1.21782 * 119.99842 * 359.97438 * 18 17 2 20 20 C 1.41544 * 119.99937 * 179.97438 * 18 17 2 21 21 C 1.35623 * 120.00502 * 173.99204 * 20 18 17 22 22 C 1.41613 * 119.99688 * 349.61324 * 21 20 18 23 23 C 1.37947 * 126.10124 * 139.97442 * 22 21 20 24 24 C 1.40321 * 106.52601 * 179.85274 * 23 22 21 25 25 C 1.35161 * 107.20412 * 0.40631 * 24 23 22 26 26 O 1.34017 * 109.03484 * 359.74568 * 25 24 23 27 27 H 1.09005 * 109.47145 * 188.70350 * 1 2 3 28 28 H 1.08999 * 109.47439 * 308.70613 * 1 2 3 29 29 H 1.09001 * 109.47104 * 68.70626 * 1 2 3 30 30 H 0.97005 * 120.00059 * 335.79430 * 6 4 2 31 31 H 0.96999 * 120.00504 * 179.97438 * 10 9 7 32 32 H 1.08997 * 111.00785 * 277.42375 * 15 4 2 33 33 H 1.09005 * 111.03329 * 153.58954 * 15 4 2 34 34 H 1.09001 * 110.36481 * 81.82890 * 16 15 4 35 35 H 1.09002 * 110.36593 * 204.14840 * 16 15 4 36 36 H 1.08010 * 119.99928 * 353.99292 * 20 18 17 37 37 H 1.07998 * 120.00310 * 169.61437 * 21 20 18 38 38 H 1.07992 * 126.73997 * 359.97438 * 23 22 21 39 39 H 1.07996 * 126.40009 * 180.13041 * 24 23 22 40 40 H 1.07993 * 125.48192 * 179.72500 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 2.3530 -0.0431 -2.0202 6 7 1.0472 -1.6830 -1.7498 7 6 1.0704 -2.0699 -3.0632 8 1 1.8317 -1.6858 -3.7259 9 6 0.1160 -2.9565 -3.5425 10 7 -0.8116 -3.4251 -2.7348 11 14 0.1481 -3.4848 -5.3340 12 1 1.2823 -2.8212 -6.0255 13 1 0.3147 -4.9583 -5.4126 14 1 -1.1271 -3.0953 -5.9878 15 6 3.2876 -1.5132 -0.6945 16 6 2.8145 -1.8804 0.7342 17 7 2.0301 -0.7157 1.1829 18 6 1.8074 -0.3655 2.4652 19 8 1.1408 0.6214 2.7199 20 6 2.3483 -1.1446 3.5158 21 6 2.2286 -0.7273 4.8007 22 6 1.7638 0.5810 5.0798 23 6 0.8976 0.9370 6.0926 24 6 0.7193 2.3255 5.9956 25 6 1.4583 2.7512 4.9471 26 8 2.0847 1.7010 4.3988 27 1 -0.3634 -1.0159 0.1555 28 1 -0.3634 0.6426 0.8019 29 1 -0.3633 0.3732 -0.9575 30 1 0.3635 -2.0283 -1.1545 31 1 -1.4787 -4.0444 -3.0698 32 1 4.1654 -0.8678 -0.6616 33 1 3.4859 -2.4092 -1.2828 34 1 2.1887 -2.7725 0.7089 35 1 3.6716 -2.0357 1.3894 36 1 2.8564 -2.0717 3.2943 37 1 2.4878 -1.3926 5.6110 38 1 0.4470 0.2771 6.8190 39 1 0.1028 2.9387 6.6361 40 1 1.5318 3.7731 4.6058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985892415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = 12.183215 kcal Electronic energy + Delta-G solvation = -23305.661949 eV Core-core repulsion = 19894.919860 eV Total energy + Delta-G solvation = -3410.742089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.27371 -41.28673 -39.00458 -35.73292 -35.02794 -33.72524 -33.32990 -32.19563 -30.83509 -29.37466 -26.75379 -25.76074 -25.11573 -23.25800 -22.51764 -21.70755 -20.64557 -19.60481 -19.39858 -18.58584 -17.77160 -17.15077 -16.81889 -16.33900 -16.15900 -15.71692 -15.37895 -14.94076 -14.73430 -14.63394 -14.26535 -13.92454 -13.75757 -13.67169 -13.37806 -13.25108 -13.10157 -12.96961 -12.89136 -12.52740 -12.37058 -12.22449 -12.01324 -11.63639 -11.47082 -11.02493 -10.93099 -10.84688 -10.63513 -9.56413 -8.99368 -8.85752 -7.91791 -5.20141 -0.34771 1.22969 1.49635 1.50563 1.60000 1.80534 2.12918 2.36174 2.54750 2.58300 3.39296 3.63372 3.82485 3.88848 3.91376 4.09622 4.18413 4.22983 4.29172 4.30935 4.41122 4.51714 4.59762 4.72630 4.79038 4.85754 4.89144 4.95397 5.06462 5.10598 5.13893 5.21651 5.32180 5.35952 5.40086 5.54660 5.57589 5.72113 6.29508 6.33369 6.67012 7.26752 7.36786 8.10337 8.34599 9.31741 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034592 B = 0.003512 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.249617 B = 7971.315940 C = 8130.953456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.134 3.866 3 H 0.075 0.925 4 C 0.163 3.837 5 H 0.071 0.929 6 N -0.724 5.724 7 C -0.234 4.234 8 H 0.081 0.919 9 C -0.074 4.074 10 N -0.970 5.970 11 Si 0.970 3.030 12 H -0.264 1.264 13 H -0.296 1.296 14 H -0.300 1.300 15 C -0.147 4.147 16 C 0.109 3.891 17 N -0.606 5.606 18 C 0.542 3.458 19 O -0.567 6.567 20 C -0.215 4.215 21 C 0.012 3.988 22 C -0.017 4.017 23 C -0.190 4.190 24 C -0.234 4.234 25 C -0.036 4.036 26 O -0.161 6.161 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.376 0.624 31 H 0.249 0.751 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.165 0.835 37 H 0.199 0.801 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.909 7.033 17.356 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.029 3.971 3 H 0.093 0.907 4 C 0.053 3.947 5 H 0.089 0.911 6 N -0.365 5.365 7 C -0.366 4.366 8 H 0.099 0.901 9 C -0.266 4.266 10 N -0.621 5.621 11 Si 0.800 3.200 12 H -0.188 1.188 13 H -0.223 1.223 14 H -0.227 1.227 15 C -0.188 4.188 16 C -0.013 4.013 17 N -0.339 5.339 18 C 0.336 3.664 19 O -0.449 6.449 20 C -0.235 4.235 21 C -0.007 4.007 22 C -0.066 4.066 23 C -0.209 4.209 24 C -0.253 4.253 25 C -0.105 4.105 26 O -0.055 6.055 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.210 0.790 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.182 0.818 37 H 0.216 0.784 38 H 0.187 0.813 39 H 0.186 0.814 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 9.809 7.554 17.090 21.103 hybrid contribution -1.023 -0.522 -0.956 1.494 sum 8.786 7.032 16.134 19.671 Atomic orbital electron populations 1.21685 0.95888 1.00363 1.00735 1.21747 0.93913 0.95962 0.85451 0.90711 1.21419 0.89400 0.91317 0.92598 0.91092 1.42638 1.33110 1.52272 1.08464 1.19673 1.09587 1.19696 0.87625 0.90141 1.25491 0.98223 1.01248 1.01628 1.69832 1.19146 1.37131 1.35962 0.85120 0.77139 0.77236 0.80522 1.18819 1.22337 1.22721 1.23358 0.98539 1.01752 0.95108 1.22346 0.95156 0.87520 0.96313 1.48632 1.51934 1.28630 1.04750 1.17406 0.81434 0.85061 0.82544 1.90814 1.41978 1.28849 1.83267 1.22431 1.05035 1.03470 0.92562 1.21199 0.91614 0.90243 0.97694 1.20190 1.04265 0.88057 0.94130 1.22539 1.01506 0.96389 1.00499 1.21995 1.05594 0.95678 1.02044 1.24765 0.97141 0.92817 0.95794 1.84237 1.57111 1.15745 1.48438 0.94510 0.93493 0.92602 0.79021 0.94244 0.89216 0.90560 0.92801 0.87717 0.81765 0.78417 0.81255 0.81441 0.76341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.11 71.98 0.58 -4.65 16 2 C 0.13 4.84 3.43 45.34 0.16 5.00 16 3 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.16 6.13 3.48 46.18 0.16 6.29 16 5 H 0.07 2.63 8.10 -2.39 -0.02 2.61 16 6 N -0.72 -34.76 4.55 -317.34 -1.44 -36.20 16 7 C -0.23 -12.38 9.96 84.03 0.84 -11.54 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 10 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 11 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 C -0.15 -4.47 6.77 31.99 0.22 -4.25 16 16 C 0.11 3.07 6.43 86.86 0.56 3.62 16 17 N -0.61 -19.76 3.06 -798.59 -2.45 -22.20 16 18 C 0.54 17.79 7.19 85.06 0.61 18.40 16 19 O -0.57 -22.08 11.69 19.01 0.22 -21.86 16 20 C -0.21 -5.07 9.31 22.48 0.21 -4.86 16 21 C 0.01 0.24 9.94 22.50 0.22 0.47 16 22 C -0.02 -0.43 5.29 23.03 0.12 -0.31 16 23 C -0.19 -4.35 10.90 22.71 0.25 -4.10 16 24 C -0.23 -5.17 10.87 22.07 0.24 -4.93 16 25 C -0.04 -0.86 12.06 67.11 0.81 -0.05 16 26 O -0.16 -4.86 7.90 17.44 0.14 -4.72 16 27 H 0.04 1.65 6.69 -2.38 -0.02 1.63 16 28 H 0.05 1.92 7.16 -2.39 -0.02 1.90 16 29 H 0.05 2.36 8.11 -2.39 -0.02 2.34 16 30 H 0.38 19.89 5.84 -92.70 -0.54 19.35 16 31 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 2.14 7.21 -2.39 -0.02 2.12 16 36 H 0.16 2.79 6.83 -2.91 -0.02 2.77 16 37 H 0.20 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.22 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -71.80 331.24 4.73 -67.07 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.51 Total: 33.47 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 5.44 Total: -4.57 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -3.61 Total: -116.67 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: 0.36 Total: -26.58 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.80 4.73 -67.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.257 kcal (2) G-P(sol) polarization free energy of solvation -71.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds