Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.87345 * 2 1 4 4 C 1.54321 * 109.88587 * 238.98956 * 2 1 3 5 5 H 1.08998 * 110.71773 * 336.77133 * 4 2 1 6 6 N 1.46496 * 110.72496 * 99.86572 * 4 2 1 7 7 C 1.36934 * 120.00548 * 205.00085 * 6 4 2 8 8 H 1.08004 * 119.99288 * 0.02562 * 7 6 4 9 9 C 1.38805 * 120.00389 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00257 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55156 * 102.94366 * 218.23376 * 4 2 1 16 16 C 1.54915 * 101.58053 * 35.50112 * 15 4 2 17 17 N 1.47026 * 110.01434 * 121.09801 * 2 1 3 18 18 C 1.34775 * 125.64665 * 298.40273 * 17 2 1 19 19 O 1.21772 * 120.00105 * 359.97438 * 18 17 2 20 20 C 1.41549 * 119.99469 * 179.97438 * 18 17 2 21 21 C 1.35632 * 119.99633 * 179.97438 * 20 18 17 22 22 C 1.41602 * 119.99959 * 179.97438 * 21 20 18 23 23 C 1.37952 * 126.10598 * 180.02562 * 22 21 20 24 24 C 1.40313 * 106.53015 * 179.97438 * 23 22 21 25 25 C 1.35152 * 107.20576 * 359.97438 * 24 23 22 26 26 O 1.34022 * 109.03340 * 359.77381 * 25 24 23 27 27 H 1.09003 * 109.47454 * 181.01485 * 1 2 3 28 28 H 1.09001 * 109.47774 * 301.01139 * 1 2 3 29 29 H 1.08996 * 109.47433 * 61.01353 * 1 2 3 30 30 H 0.96999 * 119.99694 * 25.00609 * 6 4 2 31 31 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 32 32 H 1.09004 * 111.00516 * 153.56825 * 15 4 2 33 33 H 1.08999 * 111.00638 * 277.42491 * 15 4 2 34 34 H 1.09001 * 110.36524 * 204.15341 * 16 15 4 35 35 H 1.08990 * 110.36923 * 81.83029 * 16 15 4 36 36 H 1.07991 * 120.00316 * 359.97438 * 20 18 17 37 37 H 1.07999 * 119.99914 * 0.02562 * 21 20 18 38 38 H 1.08005 * 126.73449 * 359.97438 * 23 22 21 39 39 H 1.07998 * 126.39472 * 180.02562 * 24 23 22 40 40 H 1.08007 * 125.48099 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7476 -1.2438 5 1 1.3050 -1.4433 -1.6205 6 7 2.4519 0.1993 -2.2886 7 6 2.4539 -0.1905 -3.6013 8 1 2.1622 -1.1961 -3.8663 9 6 2.8306 0.7066 -4.5912 10 7 2.8320 0.3320 -5.8530 11 14 3.3344 2.4460 -4.1328 12 1 2.1379 3.3255 -4.1381 13 1 3.9417 2.4445 -2.7776 14 1 4.3241 2.9506 -5.1183 15 6 3.2900 -1.5099 -0.6955 16 6 2.8195 -1.8770 0.7341 17 7 2.0331 -0.7135 1.1829 18 6 1.8124 -0.3619 2.4651 19 8 1.1452 0.6244 2.7198 20 6 2.3564 -1.1391 3.5157 21 6 2.1348 -0.7849 4.8061 22 6 2.6785 -1.5627 5.8571 23 6 2.5328 -1.3200 7.2073 24 6 3.2330 -2.3372 7.8735 25 6 3.7654 -3.1420 6.9273 26 8 3.4261 -2.6772 5.7168 27 1 -0.3634 -1.0275 0.0182 28 1 -0.3635 0.5294 0.8807 29 1 -0.3634 0.4980 -0.8989 30 1 2.7136 1.1025 -2.0506 31 1 3.0950 0.9590 -6.5448 32 1 3.4887 -2.4061 -1.2834 33 1 4.1664 -0.8627 -0.6643 34 1 3.6778 -2.0298 1.3884 35 1 2.1956 -2.7703 0.7105 36 1 2.9478 -2.0140 3.2898 37 1 1.5430 0.0898 5.0319 38 1 1.9869 -0.5066 7.6622 39 1 3.3279 -2.4553 8.9428 40 1 4.3648 -4.0203 7.1162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985892416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = 20.140610 kcal Electronic energy + Delta-G solvation = -22372.989452 eV Core-core repulsion = 18962.592421 eV Total energy + Delta-G solvation = -3410.397031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.87766 -40.18869 -37.72495 -34.36846 -34.27445 -33.38384 -31.78224 -31.01213 -29.94924 -28.79957 -25.36838 -24.72039 -22.69951 -22.39653 -22.03655 -20.62977 -20.02737 -18.54155 -17.94230 -17.59539 -16.88687 -16.42216 -16.16944 -15.25862 -14.97605 -14.60571 -14.07670 -13.90451 -13.45321 -13.35735 -13.20142 -13.09441 -12.73760 -12.68403 -12.32576 -12.20318 -12.03548 -11.83700 -11.30957 -11.21040 -10.89986 -10.88807 -10.64418 -10.36924 -10.25668 -10.07061 -9.78722 -9.63219 -8.98115 -8.55384 -8.19950 -7.35190 -5.82753 -3.19977 0.20460 1.81592 2.40968 2.60830 3.14545 3.35958 3.39573 3.43112 3.44141 4.35928 4.54782 4.55907 4.59182 4.87029 4.89204 4.94266 5.16649 5.21993 5.30644 5.40835 5.41888 5.53064 5.58003 5.68083 5.69071 5.75697 5.79966 5.88011 5.97933 6.03909 6.12868 6.20504 6.35831 6.51321 6.54133 6.64811 6.71652 6.79868 7.68077 7.91376 8.26170 8.35758 9.12448 9.85119 10.03533 11.34954 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.002995 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.014156 B = 9347.634188 C = 9572.286297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 H 0.074 0.926 4 C 0.181 3.819 5 H 0.077 0.923 6 N -0.738 5.738 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.277 1.277 14 H -0.290 1.290 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.604 5.604 18 C 0.560 3.440 19 O -0.550 6.550 20 C -0.191 4.191 21 C -0.002 4.002 22 C -0.003 4.003 23 C -0.169 4.169 24 C -0.219 4.219 25 C -0.023 4.023 26 O -0.165 6.165 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.363 0.637 31 H 0.260 0.740 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -7.442 26.054 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.380 5.380 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.203 1.203 14 H -0.217 1.217 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.336 5.336 18 C 0.352 3.648 19 O -0.432 6.432 20 C -0.212 4.212 21 C -0.022 4.022 22 C -0.053 4.053 23 C -0.188 4.188 24 C -0.238 4.238 25 C -0.092 4.092 26 O -0.061 6.061 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.196 0.804 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.571 -7.141 25.681 26.662 hybrid contribution 0.587 1.121 0.427 1.335 sum 1.158 -6.020 26.108 26.818 Atomic orbital electron populations 1.22045 0.94565 1.01911 1.02765 1.21958 0.94760 0.96713 0.84711 0.90784 1.21228 0.93909 0.91326 0.86564 0.90498 1.42705 1.80896 1.11069 1.03333 1.19031 1.38936 0.99028 0.80726 0.88986 1.24660 1.01249 0.97788 0.95070 1.69697 1.53961 1.35202 0.98891 0.86589 0.78488 0.86214 0.77473 1.20905 1.20283 1.21656 1.23541 1.00983 1.02025 0.93107 1.22441 0.94736 0.88407 0.97046 1.48494 1.51519 1.28553 1.05072 1.16596 0.81197 0.85102 0.81927 1.90813 1.40789 1.27958 1.83592 1.22188 1.03694 1.02109 0.93211 1.20653 0.95051 0.96607 0.89887 1.19923 1.00651 0.89769 0.94921 1.22368 1.03098 1.01420 0.91907 1.21789 1.03556 0.97529 1.00894 1.24324 1.02642 1.01081 0.81155 1.84117 1.54357 1.35371 1.32224 0.92838 0.91882 0.91079 0.80368 0.92942 0.90005 0.90753 0.91105 0.91343 0.85179 0.82225 0.82624 0.82962 0.77729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.10 37.15 0.34 -2.18 16 2 C 0.12 2.10 3.20 -66.96 -0.21 1.88 16 3 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 4 C 0.18 3.34 3.14 -66.10 -0.21 3.13 16 5 H 0.08 1.44 7.80 -51.93 -0.40 1.03 16 6 N -0.74 -16.88 5.03 -51.66 -0.26 -17.14 16 7 C -0.25 -6.72 10.44 -15.06 -0.16 -6.88 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.64 13.97 55.49 0.78 -27.87 16 11 Si 0.88 21.88 27.74 -169.99 -4.71 17.17 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.51 6.52 56.52 0.37 -6.15 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 15 C -0.16 -2.44 6.77 -24.58 -0.17 -2.61 16 16 C 0.10 1.24 6.49 -2.53 -0.02 1.22 16 17 N -0.60 -9.17 3.07 -166.42 -0.51 -9.68 16 18 C 0.56 8.59 7.40 -15.00 -0.11 8.48 16 19 O -0.55 -10.00 15.16 5.12 0.08 -9.93 16 20 C -0.19 -2.33 8.91 -39.25 -0.35 -2.68 16 21 C 0.00 -0.02 9.39 -39.23 -0.37 -0.39 16 22 C 0.00 -0.03 6.84 -38.40 -0.26 -0.30 16 23 C -0.17 -1.41 10.90 -38.91 -0.42 -1.84 16 24 C -0.22 -1.54 10.87 -39.90 -0.43 -1.97 16 25 C -0.02 -0.16 12.06 29.63 0.36 0.20 16 26 O -0.17 -1.62 10.18 4.68 0.05 -1.57 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.06 6.91 -51.93 -0.36 0.70 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.36 8.34 5.42 -40.82 -0.22 8.12 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.13 1.39 6.40 -52.49 -0.34 1.05 16 37 H 0.16 1.68 7.46 -52.49 -0.39 1.28 16 38 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 39 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.21 0.61 8.06 -52.48 -0.42 0.19 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -32.98 336.95 -7.07 -40.06 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.46 Total: 7.65 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.11 Total: -3.77 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.00 Total: -54.69 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.13 Total: -11.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.98 -7.07 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.199 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds