Wall clock time and date at job start Tue Mar 31 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.87345 * 2 1 4 4 C 1.54321 * 109.88587 * 238.98956 * 2 1 3 5 5 H 1.08998 * 110.71773 * 336.77133 * 4 2 1 6 6 N 1.46496 * 110.72496 * 99.86572 * 4 2 1 7 7 C 1.36934 * 120.00548 * 205.00085 * 6 4 2 8 8 H 1.08004 * 119.99288 * 0.02562 * 7 6 4 9 9 C 1.38805 * 120.00389 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00257 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55156 * 102.94366 * 218.23376 * 4 2 1 16 16 C 1.54915 * 101.58053 * 35.50112 * 15 4 2 17 17 N 1.47026 * 110.01434 * 121.09801 * 2 1 3 18 18 C 1.34775 * 125.64665 * 298.40273 * 17 2 1 19 19 O 1.21772 * 120.00105 * 359.97438 * 18 17 2 20 20 C 1.41549 * 119.99469 * 179.97438 * 18 17 2 21 21 C 1.35632 * 119.99633 * 179.97438 * 20 18 17 22 22 C 1.41602 * 119.99959 * 179.97438 * 21 20 18 23 23 C 1.37952 * 126.10598 * 180.02562 * 22 21 20 24 24 C 1.40313 * 106.53015 * 179.97438 * 23 22 21 25 25 C 1.35152 * 107.20576 * 359.97438 * 24 23 22 26 26 O 1.34022 * 109.03340 * 359.77381 * 25 24 23 27 27 H 1.09003 * 109.47454 * 181.01485 * 1 2 3 28 28 H 1.09001 * 109.47774 * 301.01139 * 1 2 3 29 29 H 1.08996 * 109.47433 * 61.01353 * 1 2 3 30 30 H 0.96999 * 119.99694 * 25.00609 * 6 4 2 31 31 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 32 32 H 1.09004 * 111.00516 * 153.56825 * 15 4 2 33 33 H 1.08999 * 111.00638 * 277.42491 * 15 4 2 34 34 H 1.09001 * 110.36524 * 204.15341 * 16 15 4 35 35 H 1.08990 * 110.36923 * 81.83029 * 16 15 4 36 36 H 1.07991 * 120.00316 * 359.97438 * 20 18 17 37 37 H 1.07999 * 119.99914 * 0.02562 * 21 20 18 38 38 H 1.08005 * 126.73449 * 359.97438 * 23 22 21 39 39 H 1.07998 * 126.39472 * 180.02562 * 24 23 22 40 40 H 1.08007 * 125.48099 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7476 -1.2438 5 1 1.3050 -1.4433 -1.6205 6 7 2.4519 0.1993 -2.2886 7 6 2.4539 -0.1905 -3.6013 8 1 2.1622 -1.1961 -3.8663 9 6 2.8306 0.7066 -4.5912 10 7 2.8320 0.3320 -5.8530 11 14 3.3344 2.4460 -4.1328 12 1 2.1379 3.3255 -4.1381 13 1 3.9417 2.4445 -2.7776 14 1 4.3241 2.9506 -5.1183 15 6 3.2900 -1.5099 -0.6955 16 6 2.8195 -1.8770 0.7341 17 7 2.0331 -0.7135 1.1829 18 6 1.8124 -0.3619 2.4651 19 8 1.1452 0.6244 2.7198 20 6 2.3564 -1.1391 3.5157 21 6 2.1348 -0.7849 4.8061 22 6 2.6785 -1.5627 5.8571 23 6 2.5328 -1.3200 7.2073 24 6 3.2330 -2.3372 7.8735 25 6 3.7654 -3.1420 6.9273 26 8 3.4261 -2.6772 5.7168 27 1 -0.3634 -1.0275 0.0182 28 1 -0.3635 0.5294 0.8807 29 1 -0.3634 0.4980 -0.8989 30 1 2.7136 1.1025 -2.0506 31 1 3.0950 0.9590 -6.5448 32 1 3.4887 -2.4061 -1.2834 33 1 4.1664 -0.8627 -0.6643 34 1 3.6778 -2.0298 1.3884 35 1 2.1956 -2.7703 0.7105 36 1 2.9478 -2.0140 3.2898 37 1 1.5430 0.0898 5.0319 38 1 1.9869 -0.5066 7.6622 39 1 3.3279 -2.4553 8.9428 40 1 4.3648 -4.0203 7.1162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985892416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:50 Heat of formation + Delta-G solvation = -1.117485 kcal Electronic energy + Delta-G solvation = -22373.911272 eV Core-core repulsion = 18962.592421 eV Total energy + Delta-G solvation = -3411.318851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.49273 -41.40096 -39.04348 -36.04224 -35.23914 -34.01153 -33.57860 -32.34072 -31.41673 -29.67543 -26.92847 -25.69042 -24.42797 -23.35958 -22.76610 -21.85613 -21.13043 -19.77766 -19.40426 -18.76296 -17.79022 -17.46070 -17.05697 -16.52394 -16.27887 -15.95796 -15.58327 -15.25617 -14.78294 -14.64673 -14.36423 -13.90324 -13.79412 -13.68005 -13.51477 -13.46825 -13.31593 -13.11657 -13.01432 -12.68055 -12.55120 -12.16026 -12.06993 -11.82984 -11.71470 -11.55176 -11.05927 -10.92661 -10.84319 -9.73172 -9.33668 -8.93933 -8.02838 -5.36920 -0.59750 1.16246 1.38047 1.39691 1.46109 1.71323 1.97104 2.03917 2.41023 2.47103 3.26655 3.48053 3.52492 3.71668 3.90006 3.98859 4.05923 4.11383 4.14954 4.26578 4.33516 4.35526 4.44913 4.65254 4.65882 4.73092 4.87419 4.88430 4.98238 5.03422 5.10219 5.15768 5.20924 5.22485 5.36088 5.44447 5.54561 5.76748 6.09410 6.20802 6.53450 7.04451 7.11048 7.79739 7.97851 9.18019 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.002995 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.014156 B = 9347.634188 C = 9572.286297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.128 3.872 3 H 0.054 0.946 4 C 0.173 3.827 5 H 0.074 0.926 6 N -0.744 5.744 7 C -0.225 4.225 8 H 0.067 0.933 9 C -0.058 4.058 10 N -0.980 5.980 11 Si 0.946 3.054 12 H -0.281 1.281 13 H -0.257 1.257 14 H -0.295 1.295 15 C -0.149 4.149 16 C 0.105 3.895 17 N -0.607 5.607 18 C 0.560 3.440 19 O -0.590 6.590 20 C -0.219 4.219 21 C 0.025 3.975 22 C -0.044 4.044 23 C -0.157 4.157 24 C -0.232 4.232 25 C -0.009 4.009 26 O -0.181 6.181 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.363 0.637 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.178 0.822 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -8.479 29.602 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.024 3.976 3 H 0.073 0.927 4 C 0.064 3.936 5 H 0.092 0.908 6 N -0.386 5.386 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.774 3.226 12 H -0.208 1.208 13 H -0.182 1.182 14 H -0.222 1.222 15 C -0.189 4.189 16 C -0.017 4.017 17 N -0.339 5.339 18 C 0.355 3.645 19 O -0.474 6.474 20 C -0.240 4.240 21 C 0.005 3.995 22 C -0.093 4.093 23 C -0.176 4.176 24 C -0.250 4.250 25 C -0.078 4.078 26 O -0.077 6.077 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.197 0.803 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.189 0.811 39 H 0.196 0.804 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.484 -8.211 29.294 30.459 hybrid contribution 0.294 1.298 -0.413 1.394 sum 1.778 -6.913 28.881 29.750 Atomic orbital electron populations 1.21957 0.94080 1.02464 1.01961 1.21685 0.95092 0.95733 0.85127 0.92740 1.21408 0.95250 0.90881 0.86056 0.90799 1.42697 1.81234 1.11939 1.02722 1.18995 1.36334 0.97676 0.82537 0.91527 1.25378 1.02664 1.01928 0.95007 1.69856 1.56445 1.36613 1.00075 0.85544 0.77952 0.81257 0.77814 1.20766 1.18234 1.22215 1.23379 0.98963 1.01519 0.95054 1.22532 0.95815 0.88081 0.95283 1.48513 1.51818 1.29013 1.04569 1.17050 0.80480 0.84750 0.82259 1.90786 1.42767 1.29770 1.84048 1.21962 1.06271 1.03246 0.92473 1.20716 0.92986 0.95805 0.89948 1.19875 1.03119 0.91072 0.95204 1.22793 1.01709 1.01590 0.91522 1.22191 1.03413 0.97093 1.02349 1.25234 1.01070 1.01301 0.80192 1.84110 1.54553 1.35374 1.33663 0.91594 0.92583 0.91886 0.80344 0.93340 0.89386 0.91775 0.88367 0.89141 0.83668 0.82470 0.81085 0.80437 0.73999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.10 71.98 0.66 -4.09 16 2 C 0.13 4.36 3.20 45.34 0.15 4.50 16 3 H 0.05 2.06 7.72 -2.38 -0.02 2.05 16 4 C 0.17 6.31 3.14 46.18 0.15 6.46 16 5 H 0.07 2.74 7.80 -2.39 -0.02 2.72 16 6 N -0.74 -33.97 5.03 -317.35 -1.60 -35.56 16 7 C -0.22 -12.38 10.44 84.03 0.88 -11.50 16 8 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 10 N -0.98 -61.91 13.97 21.65 0.30 -61.61 16 11 Si 0.95 45.75 27.74 68.60 1.90 47.65 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 13 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 14 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 15 C -0.15 -4.45 6.77 31.99 0.22 -4.24 16 16 C 0.10 2.44 6.49 86.86 0.56 3.00 16 17 N -0.61 -17.75 3.07 -798.61 -2.45 -20.20 16 18 C 0.56 16.80 7.40 85.06 0.63 17.43 16 19 O -0.59 -21.55 15.16 -4.58 -0.07 -21.62 16 20 C -0.22 -5.03 8.91 22.48 0.20 -4.83 16 21 C 0.03 0.52 9.39 22.50 0.21 0.74 16 22 C -0.04 -0.80 6.84 23.03 0.16 -0.64 16 23 C -0.16 -2.20 10.90 22.71 0.25 -1.96 16 24 C -0.23 -2.40 10.87 22.06 0.24 -2.16 16 25 C -0.01 -0.09 12.06 67.11 0.81 0.72 16 26 O -0.18 -3.05 10.18 -6.16 -0.06 -3.12 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.89 6.91 -2.39 -0.02 1.88 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.36 16.51 5.42 -92.71 -0.50 16.01 16 31 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 1.81 7.12 -2.39 -0.02 1.79 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.15 2.79 6.40 -2.92 -0.02 2.77 16 37 H 0.16 3.22 7.46 -2.91 -0.02 3.19 16 38 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.24 0.26 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -73.05 336.95 4.08 -68.97 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.49 Total: 24.96 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.56 Total: 0.52 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -3.74 Total: -117.37 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.13 Total: -24.74 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Total: -73.05 4.08 -68.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.855 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds