Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.87833 * 2 1 4 4 C 1.54325 * 109.88339 * 238.98181 * 2 1 3 5 5 H 1.09003 * 110.72345 * 336.77992 * 4 2 1 6 6 N 1.46496 * 110.71891 * 99.87237 * 4 2 1 7 7 C 1.36940 * 120.00321 * 202.56287 * 6 4 2 8 8 H 1.08006 * 119.99521 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00494 * 180.02562 * 7 6 4 10 10 N 1.31625 * 119.99362 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00165 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46945 * 179.97438 * 11 9 7 13 13 H 1.48497 * 109.46770 * 299.99499 * 11 9 7 14 14 H 1.48501 * 109.47050 * 59.99694 * 11 9 7 15 15 C 1.55157 * 103.10344 * 218.32548 * 4 2 1 16 16 C 1.55117 * 101.48776 * 35.28344 * 15 4 2 17 17 N 1.47032 * 110.01249 * 121.10134 * 2 1 3 18 18 C 1.34777 * 125.64077 * 298.39364 * 17 2 1 19 19 O 1.21775 * 120.00844 * 359.97438 * 18 17 2 20 20 C 1.41553 * 119.99300 * 179.97438 * 18 17 2 21 21 C 1.35628 * 119.99704 * 186.33011 * 20 18 17 22 22 C 1.41604 * 120.00223 * 8.85542 * 21 20 18 23 23 C 1.37952 * 126.10561 * 219.81114 * 22 21 20 24 24 C 1.40314 * 106.52652 * 179.84959 * 23 22 21 25 25 C 1.35153 * 107.20755 * 0.41081 * 24 23 22 26 26 O 1.34017 * 109.03372 * 359.73939 * 25 24 23 27 27 H 1.09001 * 109.47610 * 181.01718 * 1 2 3 28 28 H 1.08999 * 109.47230 * 301.01659 * 1 2 3 29 29 H 1.09001 * 109.47092 * 61.01477 * 1 2 3 30 30 H 0.97001 * 120.00518 * 22.56285 * 6 4 2 31 31 H 0.97005 * 119.99261 * 180.02562 * 10 9 7 32 32 H 1.09008 * 111.00205 * 153.48837 * 15 4 2 33 33 H 1.08998 * 111.00842 * 277.33530 * 15 4 2 34 34 H 1.08991 * 110.42184 * 204.29121 * 16 15 4 35 35 H 1.09004 * 110.20899 * 82.03919 * 16 15 4 36 36 H 1.08003 * 120.00494 * 6.33885 * 20 18 17 37 37 H 1.08003 * 119.99625 * 188.85718 * 21 20 18 38 38 H 1.08001 * 126.72955 * 359.97438 * 23 22 21 39 39 H 1.08005 * 126.39379 * 180.15279 * 24 23 22 40 40 H 1.07998 * 125.48316 * 179.76172 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3049 -1.4434 -1.6205 6 7 2.4520 0.1991 -2.2886 7 6 2.5020 -0.2052 -3.5960 8 1 2.2490 -1.2223 -3.8568 9 6 2.8789 0.6919 -4.5860 10 7 3.1877 1.9313 -4.2680 11 14 2.9477 0.1402 -6.3693 12 1 3.3745 1.2778 -7.2232 13 1 3.9202 -0.9737 -6.5056 14 1 1.6027 -0.3217 -6.7969 15 6 3.2893 -1.5136 -0.6988 16 6 2.8195 -1.8770 0.7342 17 7 2.0331 -0.7136 1.1830 18 6 1.8125 -0.3618 2.4651 19 8 1.1453 0.6245 2.7199 20 6 2.3563 -1.1391 3.5158 21 6 2.0302 -0.8624 4.8029 22 6 1.0076 0.0746 5.0885 23 6 1.0234 1.0118 6.1006 24 6 -0.1841 1.7204 6.0073 25 6 -0.8772 1.1948 4.9729 26 8 -0.1587 0.2063 4.4227 27 1 -0.3634 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8807 29 1 -0.3633 0.4980 -0.8990 30 1 2.6796 1.1125 -2.0544 31 1 3.4507 2.5583 -4.9599 32 1 3.4845 -2.4097 -1.2880 33 1 4.1674 -0.8686 -0.6690 34 1 3.6777 -2.0300 1.3884 35 1 2.1954 -2.7705 0.7107 36 1 3.0311 -1.9523 3.2926 37 1 2.5505 -1.3567 5.6099 38 1 1.8115 1.1703 6.8219 39 1 -0.5022 2.5314 6.6458 40 1 -1.8528 1.5195 4.6425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985892417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = 27.148290 kcal Electronic energy + Delta-G solvation = -23079.291587 eV Core-core repulsion = 19669.198432 eV Total energy + Delta-G solvation = -3410.093155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.34439 -40.00596 -37.57453 -34.12274 -34.06548 -32.78519 -31.66155 -30.83734 -29.45108 -28.34161 -25.18730 -24.45722 -22.99338 -22.12143 -21.59982 -20.62664 -19.78258 -18.58744 -17.59006 -17.21631 -16.59592 -15.86720 -15.75026 -15.01991 -14.66995 -14.16550 -14.08465 -13.67339 -13.38523 -13.34600 -12.85523 -12.83214 -12.76495 -12.48105 -12.16257 -12.08038 -11.84354 -11.55882 -11.12666 -11.02041 -10.82697 -10.57010 -10.27730 -10.12588 -10.01407 -9.81959 -9.74358 -9.52495 -8.93701 -8.33715 -7.92672 -7.02926 -5.81300 -3.11764 0.56030 2.16084 2.70316 3.21333 3.33439 3.41455 3.46321 3.47235 3.56456 4.54996 4.66788 4.76746 5.00654 5.03961 5.07274 5.21385 5.26705 5.39823 5.51439 5.61210 5.62563 5.71363 5.74147 5.83077 5.92673 5.95683 6.03673 6.13790 6.15044 6.24873 6.32432 6.49350 6.54541 6.60917 6.65642 6.82179 6.94309 7.24787 7.65050 7.84171 8.35910 8.44856 9.47360 10.02289 10.37050 11.40833 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032722 B = 0.003388 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.493230 B = 8262.038583 C = 8695.501516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 H 0.075 0.925 4 C 0.176 3.824 5 H 0.065 0.935 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.291 1.291 13 H -0.285 1.285 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.098 3.902 17 N -0.604 5.604 18 C 0.549 3.451 19 O -0.529 6.529 20 C -0.193 4.193 21 C -0.007 4.007 22 C 0.014 3.986 23 C -0.187 4.187 24 C -0.228 4.228 25 C -0.018 4.018 26 O -0.131 6.131 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.386 0.614 31 H 0.257 0.743 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 -7.315 20.063 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.024 3.976 3 H 0.093 0.907 4 C 0.064 3.936 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.025 4.025 17 N -0.338 5.338 18 C 0.341 3.659 19 O -0.408 6.408 20 C -0.213 4.213 21 C -0.027 4.027 22 C -0.037 4.037 23 C -0.206 4.206 24 C -0.247 4.247 25 C -0.088 4.088 26 O -0.024 6.024 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.220 0.780 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.915 -7.008 19.792 21.358 hybrid contribution 0.375 0.173 -0.861 0.955 sum -3.540 -6.835 18.931 20.436 Atomic orbital electron populations 1.22007 0.94926 1.01456 1.02567 1.21871 0.94388 0.96839 0.84496 0.90651 1.21245 0.93504 0.91598 0.87243 0.91699 1.42345 1.80390 1.10369 1.02389 1.19169 1.39099 0.95943 0.83330 0.91056 1.24768 1.02016 0.95741 0.98123 1.69664 1.51862 1.03711 1.32539 0.86251 0.77774 0.77245 0.84784 1.21680 1.21209 1.21190 1.23605 1.01413 1.01716 0.92994 1.22422 0.94548 0.88455 0.97115 1.48505 1.51736 1.28398 1.05124 1.16736 0.81351 0.85847 0.82001 1.90849 1.39458 1.27783 1.82717 1.22377 1.04037 1.01607 0.93294 1.20590 0.92336 0.92983 0.96835 1.19562 0.88885 1.01442 0.93806 1.22104 0.99373 0.98694 1.00442 1.21592 0.96292 1.04564 1.02223 1.24122 0.98328 0.90750 0.95609 1.84286 1.25409 1.44850 1.47856 0.93256 0.91982 0.91329 0.78002 0.93327 0.90565 0.90694 0.91338 0.91759 0.84613 0.82907 0.83601 0.83783 0.78684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.10 37.15 0.34 -2.30 16 2 C 0.13 2.34 3.20 -66.95 -0.21 2.13 16 3 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 4 C 0.18 3.42 3.12 -66.10 -0.21 3.21 16 5 H 0.07 1.26 7.81 -51.93 -0.41 0.86 16 6 N -0.71 -17.53 5.24 -51.65 -0.27 -17.80 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 11 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 15 C -0.16 -2.56 6.79 -24.47 -0.17 -2.73 16 16 C 0.10 1.30 6.53 -2.42 -0.02 1.28 16 17 N -0.60 -9.64 3.07 -166.28 -0.51 -10.15 16 18 C 0.55 8.85 7.21 -15.00 -0.11 8.74 16 19 O -0.53 -10.07 11.46 -19.72 -0.23 -10.29 16 20 C -0.19 -2.30 9.37 -39.25 -0.37 -2.66 16 21 C -0.01 -0.08 9.95 -39.23 -0.39 -0.47 16 22 C 0.01 0.18 5.32 -38.40 -0.20 -0.02 16 23 C -0.19 -2.23 10.90 -38.91 -0.42 -2.65 16 24 C -0.23 -2.64 10.87 -39.90 -0.43 -3.07 16 25 C -0.02 -0.22 12.06 29.63 0.36 0.14 16 26 O -0.13 -1.98 7.81 -20.15 -0.16 -2.14 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.12 6.91 -51.93 -0.36 0.77 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.39 10.25 7.53 -40.82 -0.31 9.94 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 0.74 7.04 -51.93 -0.37 0.38 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.14 1.19 6.69 -52.48 -0.35 0.84 16 37 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -33.02 334.16 -8.05 -41.06 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.54 Total: 9.92 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.08 Total: -5.54 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.06 Total: -55.02 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.38 Total: -12.43 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.02 -8.05 -41.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.213 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds