Wall clock time and date at job start Tue Mar 31 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.87833 * 2 1 4 4 C 1.54325 * 109.88339 * 238.98181 * 2 1 3 5 5 H 1.09003 * 110.72345 * 336.77992 * 4 2 1 6 6 N 1.46496 * 110.71891 * 99.87237 * 4 2 1 7 7 C 1.36940 * 120.00321 * 202.56287 * 6 4 2 8 8 H 1.08006 * 119.99521 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00494 * 180.02562 * 7 6 4 10 10 N 1.31625 * 119.99362 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00165 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46945 * 179.97438 * 11 9 7 13 13 H 1.48497 * 109.46770 * 299.99499 * 11 9 7 14 14 H 1.48501 * 109.47050 * 59.99694 * 11 9 7 15 15 C 1.55157 * 103.10344 * 218.32548 * 4 2 1 16 16 C 1.55117 * 101.48776 * 35.28344 * 15 4 2 17 17 N 1.47032 * 110.01249 * 121.10134 * 2 1 3 18 18 C 1.34777 * 125.64077 * 298.39364 * 17 2 1 19 19 O 1.21775 * 120.00844 * 359.97438 * 18 17 2 20 20 C 1.41553 * 119.99300 * 179.97438 * 18 17 2 21 21 C 1.35628 * 119.99704 * 186.33011 * 20 18 17 22 22 C 1.41604 * 120.00223 * 8.85542 * 21 20 18 23 23 C 1.37952 * 126.10561 * 219.81114 * 22 21 20 24 24 C 1.40314 * 106.52652 * 179.84959 * 23 22 21 25 25 C 1.35153 * 107.20755 * 0.41081 * 24 23 22 26 26 O 1.34017 * 109.03372 * 359.73939 * 25 24 23 27 27 H 1.09001 * 109.47610 * 181.01718 * 1 2 3 28 28 H 1.08999 * 109.47230 * 301.01659 * 1 2 3 29 29 H 1.09001 * 109.47092 * 61.01477 * 1 2 3 30 30 H 0.97001 * 120.00518 * 22.56285 * 6 4 2 31 31 H 0.97005 * 119.99261 * 180.02562 * 10 9 7 32 32 H 1.09008 * 111.00205 * 153.48837 * 15 4 2 33 33 H 1.08998 * 111.00842 * 277.33530 * 15 4 2 34 34 H 1.08991 * 110.42184 * 204.29121 * 16 15 4 35 35 H 1.09004 * 110.20899 * 82.03919 * 16 15 4 36 36 H 1.08003 * 120.00494 * 6.33885 * 20 18 17 37 37 H 1.08003 * 119.99625 * 188.85718 * 21 20 18 38 38 H 1.08001 * 126.72955 * 359.97438 * 23 22 21 39 39 H 1.08005 * 126.39379 * 180.15279 * 24 23 22 40 40 H 1.07998 * 125.48316 * 179.76172 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3049 -1.4434 -1.6205 6 7 2.4520 0.1991 -2.2886 7 6 2.5020 -0.2052 -3.5960 8 1 2.2490 -1.2223 -3.8568 9 6 2.8789 0.6919 -4.5860 10 7 3.1877 1.9313 -4.2680 11 14 2.9477 0.1402 -6.3693 12 1 3.3745 1.2778 -7.2232 13 1 3.9202 -0.9737 -6.5056 14 1 1.6027 -0.3217 -6.7969 15 6 3.2893 -1.5136 -0.6988 16 6 2.8195 -1.8770 0.7342 17 7 2.0331 -0.7136 1.1830 18 6 1.8125 -0.3618 2.4651 19 8 1.1453 0.6245 2.7199 20 6 2.3563 -1.1391 3.5158 21 6 2.0302 -0.8624 4.8029 22 6 1.0076 0.0746 5.0885 23 6 1.0234 1.0118 6.1006 24 6 -0.1841 1.7204 6.0073 25 6 -0.8772 1.1948 4.9729 26 8 -0.1587 0.2063 4.4227 27 1 -0.3634 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8807 29 1 -0.3633 0.4980 -0.8990 30 1 2.6796 1.1125 -2.0544 31 1 3.4507 2.5583 -4.9599 32 1 3.4845 -2.4097 -1.2880 33 1 4.1674 -0.8686 -0.6690 34 1 3.6777 -2.0300 1.3884 35 1 2.1954 -2.7705 0.7107 36 1 3.0311 -1.9523 3.2926 37 1 2.5505 -1.3567 5.6099 38 1 1.8115 1.1703 6.8219 39 1 -0.5022 2.5314 6.6458 40 1 -1.8528 1.5195 4.6425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985892417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:52 Heat of formation + Delta-G solvation = 6.817981 kcal Electronic energy + Delta-G solvation = -23080.173175 eV Core-core repulsion = 19669.198432 eV Total energy + Delta-G solvation = -3410.974743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.27443 -41.25714 -38.92380 -35.90856 -35.03126 -33.72359 -33.36723 -32.24077 -30.99533 -29.40935 -26.85620 -25.59700 -24.68166 -23.28097 -22.51760 -21.83827 -21.13197 -19.68343 -19.17067 -18.62739 -17.73127 -17.09854 -16.82775 -16.55484 -16.01190 -15.54330 -15.45517 -14.94890 -14.87527 -14.60990 -14.35159 -13.92465 -13.69181 -13.54265 -13.37450 -13.31096 -13.15719 -13.06446 -12.84915 -12.62945 -12.50470 -12.20900 -12.09872 -11.71839 -11.54588 -11.04216 -10.93354 -10.82730 -10.63001 -9.59637 -9.03363 -8.85833 -7.94242 -5.24591 -0.33601 1.22916 1.48832 1.51961 1.57857 1.79523 2.08572 2.34374 2.55390 2.57863 3.37212 3.60686 3.77463 3.85570 3.96170 4.09902 4.17146 4.19304 4.23886 4.37270 4.42033 4.49307 4.54951 4.66550 4.74092 4.83864 4.89302 4.93240 5.04247 5.09718 5.13669 5.21320 5.23721 5.34300 5.42882 5.51863 5.54499 5.72036 6.25806 6.33603 6.65692 7.25829 7.31963 8.04032 8.28247 9.29184 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032722 B = 0.003388 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.493230 B = 8262.038583 C = 8695.501516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.135 3.865 3 H 0.038 0.962 4 C 0.170 3.830 5 H 0.069 0.931 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.083 0.917 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.975 3.025 12 H -0.300 1.300 13 H -0.274 1.274 14 H -0.278 1.278 15 C -0.148 4.148 16 C 0.106 3.894 17 N -0.608 5.608 18 C 0.540 3.460 19 O -0.569 6.569 20 C -0.211 4.211 21 C 0.011 3.989 22 C -0.018 4.018 23 C -0.190 4.190 24 C -0.235 4.235 25 C -0.038 4.038 26 O -0.160 6.160 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.370 0.630 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.173 0.827 37 H 0.202 0.798 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 -9.884 21.719 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.030 3.970 3 H 0.056 0.944 4 C 0.060 3.940 5 H 0.087 0.913 6 N -0.369 5.369 7 C -0.371 4.371 8 H 0.101 0.899 9 C -0.268 4.268 10 N -0.623 5.623 11 Si 0.804 3.196 12 H -0.226 1.226 13 H -0.200 1.200 14 H -0.204 1.204 15 C -0.189 4.189 16 C -0.016 4.016 17 N -0.341 5.341 18 C 0.334 3.666 19 O -0.451 6.451 20 C -0.231 4.231 21 C -0.008 4.008 22 C -0.068 4.068 23 C -0.209 4.209 24 C -0.253 4.253 25 C -0.108 4.108 26 O -0.054 6.054 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.202 0.798 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.190 0.810 37 H 0.218 0.782 38 H 0.189 0.811 39 H 0.185 0.815 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.354 -9.654 21.486 23.793 hybrid contribution 0.120 1.014 -1.228 1.597 sum -3.234 -8.640 20.258 22.260 Atomic orbital electron populations 1.21870 0.94509 1.02058 1.01280 1.21531 0.94624 0.95200 0.85621 0.94353 1.21439 0.95053 0.91033 0.86469 0.91326 1.42522 1.80810 1.10567 1.02987 1.19604 1.36917 0.96185 0.84356 0.89890 1.25601 1.02994 0.95922 1.02298 1.69842 1.54107 1.04980 1.33330 0.85186 0.78075 0.76604 0.79728 1.22642 1.20011 1.20361 1.23417 0.98814 1.01201 0.95436 1.22566 0.95878 0.87987 0.95208 1.48567 1.52134 1.28924 1.04511 1.17525 0.80732 0.85830 0.82556 1.90833 1.41322 1.29690 1.83246 1.22437 1.05660 1.02876 0.92143 1.21235 0.90655 0.91097 0.97819 1.20274 0.89340 1.02895 0.94278 1.22544 0.99950 0.98047 1.00409 1.21992 0.96221 1.04957 1.02177 1.24728 0.99382 0.90633 0.96060 1.84257 1.26446 1.45786 1.48925 0.91584 0.93103 0.92691 0.79841 0.94106 0.89178 0.92714 0.87814 0.89090 0.80950 0.78156 0.81054 0.81535 0.76694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.10 71.98 0.66 -4.31 16 2 C 0.14 5.05 3.20 45.34 0.15 5.20 16 3 H 0.04 1.70 7.70 -2.39 -0.02 1.69 16 4 C 0.17 6.57 3.12 46.18 0.14 6.71 16 5 H 0.07 2.61 7.81 -2.39 -0.02 2.59 16 6 N -0.73 -36.65 5.24 -317.32 -1.66 -38.32 16 7 C -0.24 -12.96 9.97 84.03 0.84 -12.12 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 10 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 11 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 15 C -0.15 -4.62 6.79 32.06 0.22 -4.40 16 16 C 0.11 2.45 6.53 86.93 0.57 3.02 16 17 N -0.61 -18.69 3.07 -798.18 -2.45 -21.14 16 18 C 0.54 16.81 7.21 85.06 0.61 17.43 16 19 O -0.57 -21.97 11.46 19.16 0.22 -21.75 16 20 C -0.21 -4.38 9.37 22.48 0.21 -4.17 16 21 C 0.01 0.21 9.95 22.50 0.22 0.43 16 22 C -0.02 -0.45 5.32 23.03 0.12 -0.33 16 23 C -0.19 -4.20 10.90 22.71 0.25 -3.96 16 24 C -0.23 -5.18 10.87 22.06 0.24 -4.94 16 25 C -0.04 -0.95 12.06 67.11 0.81 -0.14 16 26 O -0.16 -4.82 7.81 17.59 0.14 -4.68 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.91 6.91 -2.39 -0.02 1.90 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.37 20.63 7.53 -92.71 -0.70 19.94 16 31 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 32 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 1.75 7.04 -2.39 -0.02 1.73 16 35 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.17 2.17 6.69 -2.91 -0.02 2.15 16 37 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 38 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.22 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -75.14 334.16 4.40 -70.73 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.35 Total: 32.64 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 5.50 Total: -5.44 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -3.83 Total: -119.11 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: 0.36 Total: -26.43 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.14 4.40 -70.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.549 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds