Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.99824 * 2 1 4 4 C 1.54329 * 109.87916 * 238.90699 * 2 1 3 5 5 H 1.08997 * 110.87372 * 144.34317 * 4 2 1 6 6 N 1.46499 * 110.72166 * 21.13707 * 4 2 1 7 7 C 1.36939 * 119.99933 * 160.30057 * 6 4 2 8 8 H 1.08001 * 119.99700 * 359.72658 * 7 6 4 9 9 C 1.38810 * 120.00095 * 179.71972 * 7 6 4 10 10 N 1.31612 * 120.00054 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99751 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47517 * 89.99708 * 11 9 7 13 13 H 1.48502 * 109.46736 * 209.99481 * 11 9 7 14 14 H 1.48496 * 109.47375 * 329.99177 * 11 9 7 15 15 C 1.55159 * 102.93889 * 262.77355 * 4 2 1 16 16 C 1.54914 * 101.58392 * 324.49797 * 15 4 2 17 17 N 1.47019 * 109.88389 * 121.09822 * 2 1 3 18 18 C 1.34782 * 125.64830 * 300.44063 * 17 2 1 19 19 O 1.21775 * 119.99507 * 0.02562 * 18 17 2 20 20 C 1.41548 * 119.99787 * 180.02562 * 18 17 2 21 21 C 1.35625 * 119.99653 * 179.97438 * 20 18 17 22 22 C 1.41606 * 120.00111 * 180.02562 * 21 20 18 23 23 C 1.37953 * 126.10493 * 180.02562 * 22 21 20 24 24 C 1.40310 * 106.52712 * 179.97438 * 23 22 21 25 25 C 1.35152 * 107.20757 * 0.02562 * 24 23 22 26 26 O 1.34016 * 109.03523 * 359.76300 * 25 24 23 27 27 H 1.08999 * 109.47045 * 181.09855 * 1 2 3 28 28 H 1.09005 * 109.46848 * 301.09255 * 1 2 3 29 29 H 1.08996 * 109.47069 * 61.09622 * 1 2 3 30 30 H 0.97001 * 119.99790 * 340.02030 * 6 4 2 31 31 H 0.96998 * 120.00381 * 180.02562 * 10 9 7 32 32 H 1.08997 * 111.00776 * 82.57566 * 15 4 2 33 33 H 1.09003 * 111.00472 * 206.42751 * 15 4 2 34 34 H 1.09001 * 110.36175 * 155.84756 * 16 15 4 35 35 H 1.08995 * 110.36501 * 278.17416 * 16 15 4 36 36 H 1.08003 * 120.00224 * 359.97438 * 20 18 17 37 37 H 1.08003 * 120.00123 * 359.97438 * 21 20 18 38 38 H 1.08001 * 126.73597 * 359.97438 * 23 22 21 39 39 H 1.08004 * 126.39886 * 180.02562 * 24 23 22 40 40 H 1.08001 * 125.48554 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.9651 -0.2844 -1.6212 6 7 1.0292 -0.8026 -2.2876 7 6 1.3870 -1.0472 -3.5865 8 1 2.4259 -1.1966 -3.8414 9 6 0.4147 -1.1033 -4.5756 10 7 0.7587 -1.3379 -5.8241 11 14 -1.3820 -0.8443 -4.1346 12 1 -1.7138 0.5995 -4.2375 13 1 -2.2377 -1.6167 -5.0707 14 1 -1.6228 -1.3098 -2.7452 15 6 2.3518 -2.1695 -0.6925 16 6 2.8569 -1.8498 0.7367 17 7 2.0301 -0.7141 1.1839 18 6 1.7754 -0.3845 2.4657 19 8 1.0757 0.5794 2.7190 20 6 2.3213 -1.1589 3.5173 21 6 2.0655 -0.8269 4.8072 22 6 2.6120 -1.6012 5.8594 23 6 2.4342 -1.3791 7.2092 24 6 3.1513 -2.3835 7.8769 25 6 3.7255 -3.1604 6.9317 26 8 3.3958 -2.6909 5.7205 27 1 -0.3633 -1.0275 0.0197 28 1 -0.3633 0.5307 0.8801 29 1 -0.3633 0.4967 -0.8996 30 1 0.0962 -0.6684 -2.0585 31 1 0.0793 -1.3767 -6.5153 32 1 1.4452 -2.7737 -0.6604 33 1 3.1270 -2.6619 -1.2797 34 1 2.7088 -2.7081 1.3921 35 1 3.9091 -1.5667 0.7127 36 1 2.9416 -2.0140 3.2926 37 1 1.4456 0.0284 5.0320 38 1 1.8565 -0.5875 7.6631 39 1 3.2299 -2.5118 8.9464 40 1 4.3464 -4.0234 7.1217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985892419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = 28.069104 kcal Electronic energy + Delta-G solvation = -22493.238866 eV Core-core repulsion = 19083.185641 eV Total energy + Delta-G solvation = -3410.053225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.87803 -40.23347 -37.81914 -34.37845 -34.32375 -33.38168 -31.82025 -30.83605 -29.90070 -28.70212 -25.48922 -24.77062 -22.92694 -22.48051 -22.11103 -20.64780 -19.31641 -18.56257 -17.96994 -17.86451 -16.92448 -16.41941 -15.81419 -15.57632 -15.01047 -14.64034 -14.18336 -13.93933 -13.55641 -13.34899 -13.13666 -13.03788 -12.84131 -12.58686 -12.36798 -12.14880 -11.92931 -11.69330 -11.42023 -11.21510 -10.90543 -10.88218 -10.51281 -10.35734 -10.25615 -10.06059 -9.79329 -9.56475 -8.98255 -8.55867 -8.20323 -7.33736 -5.82210 -3.18889 0.20369 1.81553 2.40857 2.60859 3.14587 3.34757 3.37791 3.42521 3.43543 4.35845 4.54677 4.55852 4.59142 4.87019 4.89197 4.95047 5.18813 5.22155 5.30730 5.40715 5.42238 5.53250 5.54650 5.66579 5.68935 5.75756 5.83741 5.88940 5.99750 6.03047 6.12620 6.19668 6.39340 6.50318 6.58341 6.60475 6.71480 6.85221 7.67697 7.93255 8.25768 8.36695 9.14237 9.86542 10.05475 11.35729 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.003031 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.121613 B = 9236.408015 C = 9606.433694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 H 0.076 0.924 4 C 0.179 3.821 5 H 0.073 0.927 6 N -0.742 5.742 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.878 3.122 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.153 4.153 16 C 0.096 3.904 17 N -0.604 5.604 18 C 0.560 3.440 19 O -0.550 6.550 20 C -0.192 4.192 21 C -0.002 4.002 22 C -0.004 4.004 23 C -0.169 4.169 24 C -0.219 4.219 25 C -0.023 4.023 26 O -0.165 6.165 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.368 0.632 31 H 0.260 0.740 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 -3.141 26.112 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.067 3.933 5 H 0.091 0.909 6 N -0.387 5.387 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.708 3.292 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.194 4.194 16 C -0.027 4.027 17 N -0.336 5.336 18 C 0.352 3.648 19 O -0.431 6.431 20 C -0.212 4.212 21 C -0.022 4.022 22 C -0.053 4.053 23 C -0.188 4.188 24 C -0.238 4.238 25 C -0.092 4.092 26 O -0.061 6.061 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.204 0.796 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.881 -2.764 25.747 26.554 hybrid contribution -1.217 -0.091 0.387 1.281 sum 4.663 -2.855 26.134 26.699 Atomic orbital electron populations 1.22056 0.95116 1.02315 1.02544 1.21820 0.94995 0.96176 0.84746 0.90552 1.21161 0.93006 0.92350 0.86735 0.90941 1.42995 1.04303 1.86863 1.04493 1.19055 0.95323 1.41402 0.81947 0.89031 1.24645 0.97363 1.01577 0.95189 1.69687 1.32712 1.55683 0.99716 0.86661 0.86819 0.78167 0.77564 1.20834 1.21575 1.20224 1.23521 1.01954 1.00923 0.92986 1.22446 0.94706 0.88418 0.97149 1.48519 1.49772 1.30299 1.05052 1.16591 0.81384 0.84879 0.81909 1.90811 1.39456 1.29220 1.83648 1.22187 1.03665 1.02160 0.93201 1.20653 0.95226 0.96429 0.89873 1.19926 0.99795 0.90632 0.94927 1.22367 1.03018 1.01497 0.91903 1.21790 1.03067 0.98020 1.00900 1.24324 1.02632 1.01098 0.81140 1.84117 1.53122 1.36636 1.32186 0.92513 0.91498 0.91118 0.79572 0.92954 0.90734 0.90037 0.91113 0.91280 0.85172 0.82223 0.82623 0.82962 0.77730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 7.95 37.16 0.30 -2.59 16 2 C 0.13 2.16 3.48 -66.95 -0.23 1.93 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.18 3.31 3.46 -66.09 -0.23 3.08 16 5 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 6 N -0.74 -16.98 4.82 -51.65 -0.25 -17.23 16 7 C -0.25 -6.75 10.46 -15.06 -0.16 -6.91 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 11 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 15 C -0.15 -2.42 6.77 -24.58 -0.17 -2.58 16 16 C 0.10 1.23 6.48 -2.53 -0.02 1.21 16 17 N -0.60 -9.13 3.08 -166.41 -0.51 -9.64 16 18 C 0.56 8.54 7.39 -15.00 -0.11 8.43 16 19 O -0.55 -9.91 15.01 5.12 0.08 -9.84 16 20 C -0.19 -2.32 8.91 -39.26 -0.35 -2.67 16 21 C 0.00 -0.02 9.39 -39.23 -0.37 -0.39 16 22 C 0.00 -0.04 6.84 -38.40 -0.26 -0.30 16 23 C -0.17 -1.41 10.90 -38.91 -0.42 -1.83 16 24 C -0.22 -1.53 10.87 -39.90 -0.43 -1.97 16 25 C -0.02 -0.16 12.06 29.63 0.36 0.20 16 26 O -0.17 -1.62 10.18 4.69 0.05 -1.57 16 27 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 28 H 0.07 1.19 6.76 -51.93 -0.35 0.84 16 29 H 0.07 1.30 6.67 -51.93 -0.35 0.96 16 30 H 0.37 8.38 2.78 -40.82 -0.11 8.27 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.13 1.39 6.40 -52.48 -0.34 1.05 16 37 H 0.16 1.67 7.46 -52.48 -0.39 1.27 16 38 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.15 0.70 8.06 -52.48 -0.42 0.27 16 40 H 0.21 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -33.03 332.50 -7.06 -40.09 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.30 Total: 8.22 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.19 Total: -4.24 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.01 Total: -54.82 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.12 Total: -11.41 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.03 -7.06 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.163 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds