Wall clock time and date at job start Tue Mar 31 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.99824 * 2 1 4 4 C 1.54329 * 109.87916 * 238.90699 * 2 1 3 5 5 H 1.08997 * 110.87372 * 144.34317 * 4 2 1 6 6 N 1.46499 * 110.72166 * 21.13707 * 4 2 1 7 7 C 1.36939 * 119.99933 * 160.30057 * 6 4 2 8 8 H 1.08001 * 119.99700 * 359.72658 * 7 6 4 9 9 C 1.38810 * 120.00095 * 179.71972 * 7 6 4 10 10 N 1.31612 * 120.00054 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99751 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47517 * 89.99708 * 11 9 7 13 13 H 1.48502 * 109.46736 * 209.99481 * 11 9 7 14 14 H 1.48496 * 109.47375 * 329.99177 * 11 9 7 15 15 C 1.55159 * 102.93889 * 262.77355 * 4 2 1 16 16 C 1.54914 * 101.58392 * 324.49797 * 15 4 2 17 17 N 1.47019 * 109.88389 * 121.09822 * 2 1 3 18 18 C 1.34782 * 125.64830 * 300.44063 * 17 2 1 19 19 O 1.21775 * 119.99507 * 0.02562 * 18 17 2 20 20 C 1.41548 * 119.99787 * 180.02562 * 18 17 2 21 21 C 1.35625 * 119.99653 * 179.97438 * 20 18 17 22 22 C 1.41606 * 120.00111 * 180.02562 * 21 20 18 23 23 C 1.37953 * 126.10493 * 180.02562 * 22 21 20 24 24 C 1.40310 * 106.52712 * 179.97438 * 23 22 21 25 25 C 1.35152 * 107.20757 * 0.02562 * 24 23 22 26 26 O 1.34016 * 109.03523 * 359.76300 * 25 24 23 27 27 H 1.08999 * 109.47045 * 181.09855 * 1 2 3 28 28 H 1.09005 * 109.46848 * 301.09255 * 1 2 3 29 29 H 1.08996 * 109.47069 * 61.09622 * 1 2 3 30 30 H 0.97001 * 119.99790 * 340.02030 * 6 4 2 31 31 H 0.96998 * 120.00381 * 180.02562 * 10 9 7 32 32 H 1.08997 * 111.00776 * 82.57566 * 15 4 2 33 33 H 1.09003 * 111.00472 * 206.42751 * 15 4 2 34 34 H 1.09001 * 110.36175 * 155.84756 * 16 15 4 35 35 H 1.08995 * 110.36501 * 278.17416 * 16 15 4 36 36 H 1.08003 * 120.00224 * 359.97438 * 20 18 17 37 37 H 1.08003 * 120.00123 * 359.97438 * 21 20 18 38 38 H 1.08001 * 126.73597 * 359.97438 * 23 22 21 39 39 H 1.08004 * 126.39886 * 180.02562 * 24 23 22 40 40 H 1.08001 * 125.48554 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.9651 -0.2844 -1.6212 6 7 1.0292 -0.8026 -2.2876 7 6 1.3870 -1.0472 -3.5865 8 1 2.4259 -1.1966 -3.8414 9 6 0.4147 -1.1033 -4.5756 10 7 0.7587 -1.3379 -5.8241 11 14 -1.3820 -0.8443 -4.1346 12 1 -1.7138 0.5995 -4.2375 13 1 -2.2377 -1.6167 -5.0707 14 1 -1.6228 -1.3098 -2.7452 15 6 2.3518 -2.1695 -0.6925 16 6 2.8569 -1.8498 0.7367 17 7 2.0301 -0.7141 1.1839 18 6 1.7754 -0.3845 2.4657 19 8 1.0757 0.5794 2.7190 20 6 2.3213 -1.1589 3.5173 21 6 2.0655 -0.8269 4.8072 22 6 2.6120 -1.6012 5.8594 23 6 2.4342 -1.3791 7.2092 24 6 3.1513 -2.3835 7.8769 25 6 3.7255 -3.1604 6.9317 26 8 3.3958 -2.6909 5.7205 27 1 -0.3633 -1.0275 0.0197 28 1 -0.3633 0.5307 0.8801 29 1 -0.3633 0.4967 -0.8996 30 1 0.0962 -0.6684 -2.0585 31 1 0.0793 -1.3767 -6.5153 32 1 1.4452 -2.7737 -0.6604 33 1 3.1270 -2.6619 -1.2797 34 1 2.7088 -2.7081 1.3921 35 1 3.9091 -1.5667 0.7127 36 1 2.9416 -2.0140 3.2926 37 1 1.4456 0.0284 5.0320 38 1 1.8565 -0.5875 7.6631 39 1 3.2299 -2.5118 8.9464 40 1 4.3464 -4.0234 7.1217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985892419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:54 Heat of formation + Delta-G solvation = 7.044278 kcal Electronic energy + Delta-G solvation = -22494.150571 eV Core-core repulsion = 19083.185641 eV Total energy + Delta-G solvation = -3410.964930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.49153 -41.45322 -39.14305 -36.05586 -35.23281 -34.01341 -33.64712 -32.17772 -31.35588 -29.64378 -26.96299 -25.88005 -24.65048 -23.51387 -22.78062 -21.54790 -20.64644 -19.89849 -19.65397 -18.74195 -17.84441 -17.18227 -17.04433 -16.75043 -16.36800 -16.04913 -15.57698 -15.40844 -14.83980 -14.72283 -14.13600 -13.91193 -13.77338 -13.67105 -13.57899 -13.39292 -13.16932 -13.09873 -13.04243 -12.90455 -12.60863 -12.14101 -11.98275 -11.74922 -11.68868 -11.56468 -11.00030 -10.96296 -10.84118 -9.73373 -9.32842 -8.93801 -8.02749 -5.36201 -0.59424 1.16423 1.36372 1.37953 1.44442 1.71488 1.97327 2.04178 2.41316 2.46530 3.26413 3.47583 3.53957 3.74342 3.84789 3.98182 4.05940 4.10602 4.13561 4.27599 4.32337 4.33633 4.46862 4.57294 4.65898 4.75488 4.79158 4.88067 4.98887 5.01063 5.10329 5.12400 5.16587 5.22282 5.35162 5.47372 5.54732 5.77720 6.09581 6.21276 6.53327 7.05856 7.11334 7.81435 7.99911 9.18353 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.003031 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.121613 B = 9236.408015 C = 9606.433694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.072 0.928 4 C 0.169 3.831 5 H 0.070 0.930 6 N -0.747 5.747 7 C -0.225 4.225 8 H 0.066 0.934 9 C -0.058 4.058 10 N -0.980 5.980 11 Si 0.939 3.061 12 H -0.279 1.279 13 H -0.294 1.294 14 H -0.256 1.256 15 C -0.146 4.146 16 C 0.105 3.895 17 N -0.607 5.607 18 C 0.561 3.439 19 O -0.588 6.588 20 C -0.219 4.219 21 C 0.026 3.974 22 C -0.044 4.044 23 C -0.157 4.157 24 C -0.232 4.232 25 C -0.010 4.010 26 O -0.181 6.181 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.369 0.631 31 H 0.257 0.743 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.178 0.822 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -4.187 29.704 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 H 0.090 0.910 4 C 0.060 3.940 5 H 0.088 0.912 6 N -0.392 5.392 7 C -0.356 4.356 8 H 0.084 0.916 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.767 3.233 12 H -0.205 1.205 13 H -0.221 1.221 14 H -0.181 1.181 15 C -0.186 4.186 16 C -0.017 4.017 17 N -0.339 5.339 18 C 0.356 3.644 19 O -0.472 6.472 20 C -0.240 4.240 21 C 0.006 3.994 22 C -0.093 4.093 23 C -0.176 4.176 24 C -0.250 4.250 25 C -0.078 4.078 26 O -0.077 6.077 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.206 0.794 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.189 0.811 39 H 0.196 0.804 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 6.402 -3.819 29.404 30.334 hybrid contribution -1.223 0.199 -0.468 1.325 sum 5.179 -3.620 28.936 29.617 Atomic orbital electron populations 1.21966 0.95614 1.01840 1.01916 1.21581 0.94544 0.96039 0.85075 0.90989 1.21354 0.91824 0.94508 0.86338 0.91206 1.42991 1.05370 1.86969 1.03874 1.19035 0.94084 1.38784 0.83734 0.91590 1.25361 1.01716 1.02798 0.95136 1.69847 1.33923 1.58357 1.00907 0.85653 0.81541 0.77995 0.78092 1.20528 1.22115 1.18062 1.23351 1.01776 0.98499 0.94989 1.22527 0.95262 0.88651 0.95306 1.48526 1.50129 1.30681 1.04554 1.17031 0.80662 0.84542 0.82207 1.90784 1.41360 1.30990 1.84078 1.21963 1.06165 1.03363 0.92489 1.20719 0.93245 0.95558 0.89919 1.19886 1.02168 0.92001 0.95225 1.22792 1.01746 1.01556 0.91516 1.22192 1.02903 0.97605 1.02350 1.25229 1.01226 1.01186 0.80185 1.84110 1.53305 1.36675 1.33625 0.92846 0.91685 0.92043 0.79401 0.93354 0.91876 0.89565 0.88420 0.89076 0.83721 0.82415 0.81066 0.80442 0.74025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 7.95 71.98 0.57 -4.87 16 2 C 0.13 4.44 3.48 45.34 0.16 4.60 16 3 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.17 6.18 3.46 46.18 0.16 6.34 16 5 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 6 N -0.75 -34.07 4.82 -317.32 -1.53 -35.60 16 7 C -0.23 -12.47 10.46 84.03 0.88 -11.59 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 10 N -0.98 -62.09 13.97 21.65 0.30 -61.79 16 11 Si 0.94 45.54 27.74 68.60 1.90 47.44 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.26 -11.37 6.52 99.48 0.65 -10.72 16 15 C -0.15 -4.41 6.77 31.99 0.22 -4.19 16 16 C 0.10 2.44 6.48 86.86 0.56 3.00 16 17 N -0.61 -17.59 3.08 -798.57 -2.46 -20.05 16 18 C 0.56 16.63 7.39 85.06 0.63 17.26 16 19 O -0.59 -21.14 15.01 -4.59 -0.07 -21.21 16 20 C -0.22 -5.00 8.91 22.48 0.20 -4.80 16 21 C 0.03 0.52 9.39 22.50 0.21 0.73 16 22 C -0.04 -0.80 6.84 23.03 0.16 -0.64 16 23 C -0.16 -2.19 10.90 22.71 0.25 -1.95 16 24 C -0.23 -2.40 10.87 22.06 0.24 -2.16 16 25 C -0.01 -0.10 12.06 67.11 0.81 0.71 16 26 O -0.18 -3.06 10.18 -6.14 -0.06 -3.12 16 27 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 28 H 0.06 2.30 6.76 -2.38 -0.02 2.28 16 29 H 0.06 2.24 6.67 -2.39 -0.02 2.22 16 30 H 0.37 16.58 2.78 -92.71 -0.26 16.32 16 31 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.10 1.82 7.12 -2.39 -0.02 1.80 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.15 2.77 6.40 -2.91 -0.02 2.75 16 37 H 0.16 3.18 7.46 -2.91 -0.02 3.16 16 38 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.24 0.28 8.06 -2.91 -0.02 0.26 16 Total: -1.00 -72.91 332.50 4.33 -68.59 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.73 Total: 26.24 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.51 Total: -0.50 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -3.69 Total: -117.44 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.13 Total: -24.33 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Total: -72.91 4.33 -68.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.630 kcal (2) G-P(sol) polarization free energy of solvation -72.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds